NO07G01180, NO07G01180 (gene) Nannochloropsis oceanica

Overview
NameNO07G01180
Unique NameNO07G01180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length555
Alignment locationchr7:382846..383400 +

Link to JBrowse

Properties
Property NameValue
DescriptionProtein KRI1 homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:382846..383400 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018034Kri1
IPR024626Kri1-like_C
Homology
[Close]
BLAST of NO07G01180 vs. NCBI_GenBank
Match: GAX95366.1 (Hypothetical protein PINS_003277 [Pythium insidiosum])

HSP 1 Score: 97.1 bits (240), Expect = 6.300e-17
Identity = 44/75 (58.67%), Postives = 61/75 (81.33%), Query Frame = 0 
Query:    2 LEELYALDYEDMIGDLPCRFKYRKVEGNSYGLTAEEILAADDQELNRFVSLKKLSTYREEEYRPKSKQRHRFREA 77
            L+ELY LDYED+IGD+ CRFKYR+V  N +GLTA+EI+AADD+EL + VSLK+L+ YREEEY    ++  +F+++
Sbjct:  496 LDELYGLDYEDLIGDIKCRFKYRQVAKNDFGLTADEIMAADDKELKQLVSLKRLAPYREEEYAVNRRKIKQFKKS 570
[Close]
BLAST of NO07G01180 vs. NCBI_GenBank
Match: CBJ48734.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5 bits (236), Expect = 1.800e-16
Identity = 41/62 (66.13%), Postives = 55/62 (88.71%), Query Frame = 0 
Query:    1 MLEELYALDYEDMIGDLPCRFKYRKVEGNSYGLTAEEILAADDQELNRFVSLKKLSTYREEE 63
            +L+ELY LDYED++GD+PCRFKY KV+ N +GL+AEEIL ADD+ELN++V LKKL+ YR++E
Sbjct:  553 LLDELYKLDYEDIVGDIPCRFKYTKVKSNDFGLSAEEILLADDKELNKYVPLKKLAPYRKDE 614
[Close]
BLAST of NO07G01180 vs. NCBI_GenBank
Match: EJK52105.1 (hypothetical protein THAOC_28658 [Thalassiosira oceanica])

HSP 1 Score: 94.4 bits (233), Expect = 4.100e-16
Identity = 46/74 (62.16%), Postives = 60/74 (81.08%), Query Frame = 0 
Query:    3 EELYALDYEDMIGDLPCRFKYRKVEGNSYGLTAEEILAADDQELNRFVSLKKLSTYREE-EYRPKSKQRHRFRE 76
            +ELY LDYED+IGD+P RFKYR VE N+YGL+ EEIL A D  L +FVSLK+++ YRE+ EY+P +K+R RFR+
Sbjct:  531 DELYKLDYEDIIGDMPTRFKYRSVERNNYGLSTEEILFARDGTLKQFVSLKRMAPYREDGEYQPGTKRRKRFRQ 604
[Close]
BLAST of NO07G01180 vs. NCBI_GenBank
Match: KCW58775.1 (hypothetical protein EUGRSUZ_H01410 [Eucalyptus grandis])

HSP 1 Score: 93.6 bits (231), Expect = 6.900e-16
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0 
Query:    1 MLEELYALDYEDMIGDLPCRFKYRKVEGNSYGLTAEEILAADDQELNRFVSLKKLSTYREEEYRPKSKQRHRFR 75
            M+EE Y LDYED IGDL  RFKY K++ N YGL   EIL  DD ELN++VSLKKL+ YRE+E+R  + QRH+ +
Sbjct:  491 MMEEYYKLDYEDTIGDLKTRFKYAKIKPNRYGLNTSEILMMDDNELNQYVSLKKLAPYREKEWRVHNNQRHQLK 564
[Close]
BLAST of NO07G01180 vs. NCBI_GenBank
Match: XP_018716975.1 (PREDICTED: LOW QUALITY PROTEIN: protein KRI1 homolog [Eucalyptus grandis])

HSP 1 Score: 93.6 bits (231), Expect = 6.900e-16
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 0 
Query:    1 MLEELYALDYEDMIGDLPCRFKYRKVEGNSYGLTAEEILAADDQELNRFVSLKKLSTYREEEYRPKSKQRHRFR 75
            M+EE Y LDYED IGDL  RFKY K++ N YGL   EIL  DD ELN++VSLKKL+ YRE+E+R  + QRH+ +
Sbjct:  499 MMEEYYKLDYEDTIGDLKTRFKYAKIKPNRYGLNTSEILMMDDNELNQYVSLKKLAPYREKEWRVHNNQRHQLK 572
[Close]
BLAST of NO07G01180 vs. NCBI_GenBank
Match: XP_009529124.1 (hypothetical protein PHYSODRAFT_506503 [Phytophthora sojae] >EGZ15375.1 hypothetical protein PHYSODRAFT_506503 [Phytophthora sojae])

HSP 1 Score: 92.8 bits (229), Expect = 1.200e-15
Identity = 41/75 (54.67%), Postives = 59/75 (78.67%), Query Frame = 0 
Query:    2 LEELYALDYEDMIGDLPCRFKYRKVEGNSYGLTAEEILAADDQELNRFVSLKKLSTYREEEYRPKSKQRHRFREA 77
            L+ELY+LDYED+IGD+ CRFKYR+VE N +GLT +EI+AADD+EL + VSLK+++ Y E E+    K+   F+++
Sbjct:  402 LDELYSLDYEDLIGDIKCRFKYRQVENNDFGLTVDEIMAADDKELKQLVSLKRMAPYAETEFAVDRKRLKNFKKS 476
[Close]
BLAST of NO07G01180 vs. NCBI_GenBank
Match: POM73059.1 (Kri1 like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 92.0 bits (227), Expect = 2.000e-15
Identity = 40/75 (53.33%), Postives = 59/75 (78.67%), Query Frame = 0 
Query:    2 LEELYALDYEDMIGDLPCRFKYRKVEGNSYGLTAEEILAADDQELNRFVSLKKLSTYREEEYRPKSKQRHRFREA 77
            L+ELY+LDYED+IGD+ CRFKYR+V+ N +GLT +EI+AADD+EL + VSLK+++ Y + EY    K+   F+++
Sbjct:  423 LDELYSLDYEDLIGDIKCRFKYRQVQNNDFGLTVDEIMAADDKELKQLVSLKRMAPYADSEYSVDRKRLKSFKKS 497
[Close]
BLAST of NO07G01180 vs. NCBI_GenBank
Match: POM75792.1 (Kri1 like protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 92.0 bits (227), Expect = 2.000e-15
Identity = 40/75 (53.33%), Postives = 59/75 (78.67%), Query Frame = 0 
Query:    2 LEELYALDYEDMIGDLPCRFKYRKVEGNSYGLTAEEILAADDQELNRFVSLKKLSTYREEEYRPKSKQRHRFREA 77
            L+ELY+LDYED+IGD+ CRFKYR+V+ N +GLT +EI+AADD+EL + VSLK+++ Y + EY    K+   F+++
Sbjct:  423 LDELYSLDYEDLIGDIKCRFKYRQVQNNDFGLTVDEIMAADDKELKQLVSLKRMAPYADNEYSVDRKRLKSFKKS 497
[Close]
BLAST of NO07G01180 vs. NCBI_GenBank
Match: OWZ11979.1 (hypothetical protein PHMEG_00014926 [Phytophthora megakarya])

HSP 1 Score: 91.7 bits (226), Expect = 2.600e-15
Identity = 40/75 (53.33%), Postives = 59/75 (78.67%), Query Frame = 0 
Query:    2 LEELYALDYEDMIGDLPCRFKYRKVEGNSYGLTAEEILAADDQELNRFVSLKKLSTYREEEYRPKSKQRHRFREA 77
            L+ELY+LDYED+IGD+ CRFKYR+V+ N +GLT +EI+AADD+EL + VSLK+++ Y + EY    K+   F+++
Sbjct:  473 LDELYSLDYEDLIGDIKCRFKYRQVQNNDFGLTVDEIMAADDKELKQLVSLKRMAPYADAEYSVDHKRLKSFKKS 547
[Close]
BLAST of NO07G01180 vs. NCBI_GenBank
Match: ETI32219.1 (hypothetical protein F443_20888 [Phytophthora parasitica P1569])

HSP 1 Score: 91.3 bits (225), Expect = 3.400e-15
Identity = 40/75 (53.33%), Postives = 59/75 (78.67%), Query Frame = 0 
Query:    2 LEELYALDYEDMIGDLPCRFKYRKVEGNSYGLTAEEILAADDQELNRFVSLKKLSTYREEEYRPKSKQRHRFREA 77
            L+ELY+LDYED+IGD+ CRFKYR+V+ N +GLT +EI+AADD+EL + VSLK+++ Y + EY    K+   F+++
Sbjct:  504 LDELYSLDYEDLIGDIKCRFKYRQVQDNDFGLTVDEIMAADDKELKQLVSLKRMAPYADTEYSVDRKRLKTFKKS 578
The following BLAST results are available for this feature:
BLAST of NO07G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX95366.16.300e-1758.67Hypothetical protein PINS_003277 [Pythium insidios... [more]
CBJ48734.11.800e-1666.13conserved unknown protein [Ectocarpus siliculosus][more]
EJK52105.14.100e-1662.16hypothetical protein THAOC_28658 [Thalassiosira oc... [more]
KCW58775.16.900e-1659.46hypothetical protein EUGRSUZ_H01410 [Eucalyptus gr... [more]
XP_018716975.16.900e-1659.46PREDICTED: LOW QUALITY PROTEIN: protein KRI1 homol... [more]
XP_009529124.11.200e-1554.67hypothetical protein PHYSODRAFT_506503 [Phytophtho... [more]
POM73059.12.000e-1553.33Kri1 like protein [Phytophthora palmivora var. pal... [more]
POM75792.12.000e-1553.33Kri1 like protein [Phytophthora palmivora var. pal... [more]
OWZ11979.12.600e-1553.33hypothetical protein PHMEG_00014926 [Phytophthora ... [more]
ETI32219.13.400e-1553.33hypothetical protein F443_20888 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G01180.1NO07G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669042gene_2438Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G01180.1NO07G01180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G01180 ID=NO07G01180|Name=NO07G01180|organism=Nannochloropsis oceanica|type=gene|length=555bp
ATGTTGGAGGAACTCTACGCCCTGGACTATGAGGACATGATCGGGGATTT
GCCTTGTCGGTTTAAGTACCGGAAGGTGGAGGGCAACTCGTATGGTTTGA
CAGCGGAGGAGATTCTTGCGGCGGATGATCAGGAGCTGAATCGATTTGTG
AGTTTGAAGAAATTGAGTACCTACAGGGAGGAGGAGTACAGACCCAAAAG
CAAGCAACGGCACCGTTTCCGCGAGGCGTTGAAAAAGAAGAGGAGGGAAG
AGGAAGAGGAGAAGGAGAGGAGGCAGAGGAAGGCGAGGGAGGCGAAGGAG
GGGGGTGAGAAGAAAGGGAGGAGGAAGAAACAAGATGGCAAGGAGGGGGA
GAAGGATGGAAGGGGAGGGGAGGAGGTGGCTGTGGATGCTGCTGTGGCAA
AGGGGGTGGGAGGCATGAAGGAGGATCTGGGGCAGCAACAGAAGCAGGAG
CAGCAGCCACAGCAACTGCAGCAGGGCGAGAGCAAGAAGCGCAAGAGGAA
GAAGAAGAAGGAAAAAGGTGGTGGGGGGCGCGGAGGGGGGGAGGAGGGGG
AGTAG
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protein sequence of NO07G01180.1

>NO07G01180.1-protein ID=NO07G01180.1-protein|Name=NO07G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MLEELYALDYEDMIGDLPCRFKYRKVEGNSYGLTAEEILAADDQELNRFV
SLKKLSTYREEEYRPKSKQRHRFREALKKKRREEEEEKERRQRKAREAKE
GGEKKGRRKKQDGKEGEKDGRGGEEVAVDAAVAKGVGGMKEDLGQQQKQE
QQPQQLQQGESKKRKRKKKKEKGGGGRGGGEEGE*
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Synonyms
Publications