NO07G01180.1, NO07G01180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G01180.1
Unique NameNO07G01180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length555
Alignment locationchr7:382846..383400 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:382846..383400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G01180.1 vs.
Match: XP_022680811.1 (calcium-dependent protein kinase 1 [Setaria italica])

HSP 1 Score: 86.7 bits (213), Expect = 8.500e-14
Identity = 39/63 (61.90%), Postives = 52/63 (82.54%), Query Frame = 0 
Query:    2 LEELYALDYEDMIGDLPCRFKYRKVEGNSYGLTAEEILAADDQELNRFVSLKKLSTYREEEYR 65
            +EE Y LDYED IGDL  RFKY+KV  NS+GL+  EILA+DD++LN++VS+KKL+ YRE E++
Sbjct:  467 MEEYYKLDYEDTIGDLKTRFKYKKVNPNSFGLSTYEILASDDKDLNQYVSMKKLAPYRESEWK 529
The following BLAST results are available for this feature:
BLAST of NO07G01180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_022680811.18.500e-1461.90calcium-dependent protein kinase 1 [Setaria italic... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G01180NO07G01180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G01180.1NO07G01180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G01180.1.cds1NO07G01180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G01180.1 ID=NO07G01180.1|Name=NO07G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=555bp
ATGTTGGAGGAACTCTACGCCCTGGACTATGAGGACATGATCGGGGATTT
GCCTTGTCGGTTTAAGTACCGGAAGGTGGAGGGCAACTCGTATGGTTTGA
CAGCGGAGGAGATTCTTGCGGCGGATGATCAGGAGCTGAATCGATTTGTG
AGTTTGAAGAAATTGAGTACCTACAGGGAGGAGGAGTACAGACCCAAAAG
CAAGCAACGGCACCGTTTCCGCGAGGCGTTGAAAAAGAAGAGGAGGGAAG
AGGAAGAGGAGAAGGAGAGGAGGCAGAGGAAGGCGAGGGAGGCGAAGGAG
GGGGGTGAGAAGAAAGGGAGGAGGAAGAAACAAGATGGCAAGGAGGGGGA
GAAGGATGGAAGGGGAGGGGAGGAGGTGGCTGTGGATGCTGCTGTGGCAA
AGGGGGTGGGAGGCATGAAGGAGGATCTGGGGCAGCAACAGAAGCAGGAG
CAGCAGCCACAGCAACTGCAGCAGGGCGAGAGCAAGAAGCGCAAGAGGAA
GAAGAAGAAGGAAAAAGGTGGTGGGGGGCGCGGAGGGGGGGAGGAGGGGG
AGTAG
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protein sequence of NO07G01180.1

>NO07G01180.1-protein ID=NO07G01180.1-protein|Name=NO07G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=185bp
MLEELYALDYEDMIGDLPCRFKYRKVEGNSYGLTAEEILAADDQELNRFV
SLKKLSTYREEEYRPKSKQRHRFREALKKKRREEEEEKERRQRKAREAKE
GGEKKGRRKKQDGKEGEKDGRGGEEVAVDAAVAKGVGGMKEDLGQQQKQE
QQPQQLQQGESKKRKRKKKKEKGGGGRGGGEEGE*
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mRNA from alignment at chr7:382846..383400+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G01180.1 ID=NO07G01180.1|Name=NO07G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=555bp|location=Sequence derived from alignment at chr7:382846..383400+ (Nannochloropsis oceanica)
ATGTTGGAGGAACTCTACGCCCTGGACTATGAGGACATGATCGGGGATTT
GCCTTGTCGGTTTAAGTACCGGAAGGTGGAGGGCAACTCGTATGGTTTGA
CAGCGGAGGAGATTCTTGCGGCGGATGATCAGGAGCTGAATCGATTTGTG
AGTTTGAAGAAATTGAGTACCTACAGGGAGGAGGAGTACAGACCCAAAAG
CAAGCAACGGCACCGTTTCCGCGAGGCGTTGAAAAAGAAGAGGAGGGAAG
AGGAAGAGGAGAAGGAGAGGAGGCAGAGGAAGGCGAGGGAGGCGAAGGAG
GGGGGTGAGAAGAAAGGGAGGAGGAAGAAACAAGATGGCAAGGAGGGGGA
GAAGGATGGAAGGGGAGGGGAGGAGGTGGCTGTGGATGCTGCTGTGGCAA
AGGGGGTGGGAGGCATGAAGGAGGATCTGGGGCAGCAACAGAAGCAGGAG
CAGCAGCCACAGCAACTGCAGCAGGGCGAGAGCAAGAAGCGCAAGAGGAA
GAAGAAGAAGGAAAAAGGTGGTGGGGGGCGCGGAGGGGGGGAGGAGGGGG
AGTAG
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Coding sequence (CDS) from alignment at chr7:382846..383400+

>NO07G01180.1 ID=NO07G01180.1|Name=NO07G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=555bp|location=Sequence derived from alignment at chr7:382846..383400+ (Nannochloropsis oceanica)
ATGTTGGAGGAACTCTACGCCCTGGACTATGAGGACATGATCGGGGATTT
GCCTTGTCGGTTTAAGTACCGGAAGGTGGAGGGCAACTCGTATGGTTTGA
CAGCGGAGGAGATTCTTGCGGCGGATGATCAGGAGCTGAATCGATTTGTG
AGTTTGAAGAAATTGAGTACCTACAGGGAGGAGGAGTACAGACCCAAAAG
CAAGCAACGGCACCGTTTCCGCGAGGCGTTGAAAAAGAAGAGGAGGGAAG
AGGAAGAGGAGAAGGAGAGGAGGCAGAGGAAGGCGAGGGAGGCGAAGGAG
GGGGGTGAGAAGAAAGGGAGGAGGAAGAAACAAGATGGCAAGGAGGGGGA
GAAGGATGGAAGGGGAGGGGAGGAGGTGGCTGTGGATGCTGCTGTGGCAA
AGGGGGTGGGAGGCATGAAGGAGGATCTGGGGCAGCAACAGAAGCAGGAG
CAGCAGCCACAGCAACTGCAGCAGGGCGAGAGCAAGAAGCGCAAGAGGAA
GAAGAAGAAGGAAAAAGGTGGTGGGGGGCGCGGAGGGGGGGAGGAGGGGG
AGTAG
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Synonyms
Publications