NO06G04220, NO06G04220 (gene) Nannochloropsis oceanica

Overview
NameNO06G04220
Unique NameNO06G04220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1972
Alignment locationchr6:1176636..1178607 -

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Properties
Property NameValue
DescriptionRibosomal rna small subunit methyltransferase e
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1176636..1178607 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0032259methylation
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0016740transferase activity
GO:0008168methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR015947PUA-like_domain
IPR029028Alpha/beta_knot_MTases
IPR006700rRNA_ssu_MeTrfase-E
Homology
BLAST of NO06G04220 vs. NCBI_GenBank
Match: EWM26412.1 (ribosomal rna small subunit methyltransferase e [Nannochloropsis gaditana])

HSP 1 Score: 294.7 bits (753), Expect = 5.800e-76
Identity = 180/370 (48.65%), Postives = 219/370 (59.19%), Query Frame = 0
Query:  149 STESPTPSCARAALSCFAFSIT-RHPPSPRPPSMLSRSSLPLFPLSFQRRSNLVRAYGESKGSRNDGSDGG--SAALQRAPRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGR----EPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLE--XXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRRRLVSLGPSVLRAETAGVVALGVYVAWREGKRAKKE 510
            S  S TPSC     + F+F  T RH   P    +  R   P+ P             G+   SR+  SD    S+ +QR+PRLYVP+ALL    P+ +S+DQ HYL  VMRLR GA VR FN  DGEW   +   +  +                              R+GG E R    E  LRLCFAPLK+AR+K LFEKATE+GVTHLQPVLTE+TDV   H E ++ KMEGGLVEAAEQCER+ +P++LP +TF AL+EEE    GGRLYICRER GARPI EVLE                   G PS +IGPEGGFSP+EL AM+G  RLVSLGPSVLRAETAG+VA+GVYV W+E +  +++
Sbjct:   92 SRASFTPSC---GFAIFSFPPTRRHVLIPSQTCLFWRCRFPVSP-----------PIGKYYSSRDKNSDFELVSSEVQRSPRLYVPEALLGKHVPVPISTDQRHYLLKVMRLRPGAYVRVFNRRDGEWIAVVADEAPDM--EPKREIGRSDKKRTRRGSDVSLIAKARIREGGGEQRNDEGESKLRLCFAPLKRARLKILFEKATEMGVTHLQPVLTEHTDVAPRHAEEMMKKMEGGLVEAAEQCERIGVPEVLPAMTFDALLEEERGG-GGRLYICREREGARPIMEVLERDWKEINEDRKNGKKEEHRGTPSIVIGPEGGFSPRELAAMKGHPRLVSLGPSVLRAETAGLVAVGVYVTWQEARSLRQK 444          
BLAST of NO06G04220 vs. NCBI_GenBank
Match: WP_028879934.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Terasakiella pusilla])

HSP 1 Score: 149.1 bits (375), Expect = 3.900e-32
Identity = 103/288 (35.76%), Postives = 144/288 (50.00%), Query Frame = 0
Query:  227 RLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRRRL-----VSLGPSVLRAETAGVVALGVYVA----WREGKR 506
            RLY+ DA L  G  + L++DQ HY+ NVMRL  G  V  FNE  GEWA  +V +                                   K  +    P L LCFAP+KK R+  + EKATELGV+ LQPV+T +T V +  T+    ++    +EA+EQCER++IP +   V+ A LI++  E+   RL++  ER GA PI + L                  G  +FL GPEGGF   EL  +   R+L     +SLGP +LRA+TA + A+  + +    W+E  R
Sbjct:    6 RLYL-DAALSAGHQVELTTDQAHYINNVMRLAVGDGVILFNECAGEWAAQIVDA------------------------RKKRCVVEVTEKLRDPEATPDLWLCFAPIKKQRLDFIIEKATELGVSTLQPVITRHTIVSKIRTD----RLHAQAIEASEQCERLNIPDVKDAVSLAQLIKDWPEE--RRLFVLDERGGALPIHDAL-------------MAHREGPHAFLTGPEGGFETSELDLL---RKLPFVTPISLGPRILRADTAALAAISCWQSVIGDWQEPLR 246          
BLAST of NO06G04220 vs. NCBI_GenBank
Match: WP_026873098.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Inquilinus limosus])

HSP 1 Score: 146.7 bits (369), Expect = 1.900e-31
Identity = 107/282 (37.94%), Postives = 136/282 (48.23%), Query Frame = 0
Query:  219 SAALQRAPRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGR-LYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRR--RLVSLGPSVLRAETAGVVALGVY 498
            S AL R  RLYV DA L  G  ++LS  Q H+LR V+RL  GA +R FN  DGEW   L   S   G                             R+      EP L LCFAP+KK  +  + EK TELG   LQPV T YTDV   +    L ++    V AAEQ ER+ +PQ+  PV   AL+       GGR L +C E   ARPI +                   +G  + L+GPEGGF+P EL+A+      R V LGP +LRA+TA + AL ++
Sbjct:    3 SDALPRT-RLYV-DADLAAGRSVALSEAQAHHLRGVLRLAPGAGLRLFNPRDGEWLARLDGLSKAGG------------------------TALAERQLRPPAPEPDLWLCFAPVKKDAVDAVVEKGTELGAAVLQPVFTRYTDVQRVN----LDRLRAHAVAAAEQSERLDVPQVRDPVGLEALLAAWP---GGRTLLVCAEAGEARPIADA--------------AAETSGPAALLVGPEGGFAPAELEALIRHEFVRPVGLGPRILRADTAAIAALAIW 237          
BLAST of NO06G04220 vs. NCBI_GenBank
Match: WP_027298648.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Rhodospirillales bacterium URHD0088])

HSP 1 Score: 146.7 bits (369), Expect = 1.900e-31
Identity = 108/284 (38.03%), Postives = 141/284 (49.65%), Query Frame = 0
Query:  225 APRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRR--RLVSLGPSVLRAETAGVVALGVYVA----WRE 503
            A RL+VPD  L  GA ++L+  Q HYLRNV+RL  GAA+  FN  DGEW   +    DGI                               +  ++  EP L L FAP+K+AR+  L EKATELGV  L PV T  T V   + E    +++   VEAAEQ ER+++P + PP T  AL+         RL +C ER  A PI +V+                + G  + LIGPEGGF+  EL  +        VSLGP +LRA+TA + AL V+ A    WRE
Sbjct:    6 AARLHVPDD-LASGATLALAEGQAHYLRNVLRLGPGAALALFNGRDGEWRGRI----DGIA--------------------KGKCSVVLDAQTRKQREEPDLWLVFAPVKRARIDYLVEKATELGVAALYPVRTARTIVERVNRE----RLQANAVEAAEQTERLTVPIVRPPETLPALL--AGWNAARRLIVCDERGRAPPIADVV----------AGLRDRLGGGAAILIGPEGGFTETELDGLANLPFVNAVSLGPRILRADTAALAALAVFQAIAGDWRE 248          
BLAST of NO06G04220 vs. NCBI_GenBank
Match: WP_069189213.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Terasakiella sp. PR1] >SCA57172.1 Ribosomal RNA small subunit methyltransferase E [Terasakiella sp. PR1])

HSP 1 Score: 144.8 bits (364), Expect = 7.400e-31
Identity = 91/273 (33.33%), Postives = 139/273 (50.92%), Query Frame = 0
Query:  227 RLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRRRLV--SLGPSVLRAETAGVVALGVY 498
            RLY+   L+  G  I L SDQ HY+ NVMRL+ G  +  FN  +GEW+  +  +                                  +K  ++   P L L FAP+KK R+  + EKATELGV+  QPV+T+ T V +  T+    ++    +EA+EQCER++IP++L  V+   LI++  +     L++  E  G++PI E L+                 G  +FL+GPEGGF P EL  +E  + +V  S+GP +LRA+TA + A+  +
Sbjct:    6 RLYIDSPLIEDGL-IELPSDQAHYVNNVMRLKVGDKLALFNGREGEWSATITQA------------------------RKKNCTLQVGKKTRQQESCPDLMLVFAPIKKQRLDFIMEKATELGVSRFQPVITKRTIVSKIRTD----RLHAQTIEASEQCERLNIPEVLEAVSLPQLIQDWSK--DRTLFVLNEHGGSKPILEGLQQFVGKSC----------GPCAFLVGPEGGFDPSELDLLEKLQNVVPLSVGPRILRADTAALAAISCW 237          
BLAST of NO06G04220 vs. NCBI_GenBank
Match: PHR75686.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Henriciella sp.])

HSP 1 Score: 144.8 bits (364), Expect = 7.400e-31
Identity = 106/298 (35.57%), Postives = 139/298 (46.64%), Query Frame = 0
Query:  221 ALQRAPRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRRRL--VSLGPSVLRAETAGVVALGVYVA----WREGKRAKKEGKG 513
            A+   PRL++ DA L  GA   +S +Q +YL  VMRL  G  VR FN  DGEW   L   S                                 R+   +   P L L FAPLKKAR   + EKA ELGV  +QPV+TE T       +    +++  ++EAAEQ ERM +P++   +T  A +E   +  G  LY C E   ARP+  VLE                 G    LIGPEGGFSPKE   +     +  V+LGP +LRAETA V AL ++ +    W+E     + G G
Sbjct:    3 AMSSVPRLFI-DADLAAGAATPVSDNQANYLLRVMRLSEGDEVRVFNGRDGEWLSRLRPES------------------------GKRASIVPERQTRPQVETPDLTLFFAPLKKARTDFVVEKACELGVRRIQPVMTERTQSSRVRRD----RLQSVVIEAAEQTERMDVPEVFDDITLQAALEAWPD--GQPLYYCDEAGDARPMRNVLE-------------EARGGAAGLLIGPEGGFSPKERDWIRKHPNIQPVTLGPRILRAETAVVAALTLWQSGVGDWQEHPYLPETGNG 256          
BLAST of NO06G04220 vs. NCBI_GenBank
Match: WP_088156833.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Inquilinus limosus] >OWJ59449.1 16S rRNA (uracil(1498)-N(3))-methyltransferase [Inquilinus limosus])

HSP 1 Score: 141.7 bits (356), Expect = 6.200e-30
Identity = 102/281 (36.30%), Postives = 133/281 (47.33%), Query Frame = 0
Query:  219 SAALQRAPRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRR--RLVSLGPSVLRAETAGVVALGVY 498
            S AL R  RL+V DA L  G  ++LS  Q H+LR V+RL  GA +R FN  DGEW   L + +   G                             R+       P L LCFAP+KK  +  + EK TELG   LQPV T +TDV   +    L ++    V AAEQCER+ +P++  PV   AL+       G  L +C E   ARP+ E                    G  + L+GPEGGF+P EL A+      R V LGP +LRA+TA + AL V+
Sbjct:    3 SDALPRT-RLHV-DAPLGEGRAVALSEPQAHHLRGVLRLAPGAGLRLFNPRDGEWLARLETLTKAGG------------------------SALAERRLRPPAPAPDLWLCFAPVKKDAIDAVVEKGTELGAAVLQPVFTRFTDVQRVN----LDRLRAHAVAAAEQCERLDVPEVRDPVGLDALL--AGWPAGRILLVCAEAGAARPLAEAAAEAA--------------GPAALLVGPEGGFAPAELDALIRHEFVRPVGLGPRILRADTAAIAALAVW 237          
BLAST of NO06G04220 vs. NCBI_GenBank
Match: SBW07531.1 (Ribosomal RNA small subunit methyltransferase E [uncultured Alphaproteobacteria bacterium])

HSP 1 Score: 141.7 bits (356), Expect = 6.200e-30
Identity = 105/294 (35.71%), Postives = 132/294 (44.90%), Query Frame = 0
Query:  225 APRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRRRL--VSLGPSVLRAETAGVVALGVYVAWREGKRAKKEGKGGTIP 517
            APRLYVPDAL    A + L+  Q HYLR+VMR+  G AVR FN  DG W   + +   G G                                  +  EP + L FAPLK AR   L EKA ELGV  LQPVLTE T     + E    ++   + EAAEQCER+++P++ P    + L+       G  L+   E  G                          G  + L+GPEGGFSP+EL  + G      V  GP +LRAETA VVAL ++ A R        G GG  P
Sbjct:    8 APRLYVPDALAE-AADVPLAPAQAHYLRDVMRMAPGDAVRLFNGRDGAWLAEVAALGKGRGSLRVGACI------------------------APQRPEPGVWLLFAPLKSARQDMLVEKAVELGVAVLQPVLTERTQTRRVNPE----RLAAQVTEAAEQCERLTLPEVRPLAELSDLL--ARWPAGRTLFYGDETGGGGAALAAFSAPAGV------------GGDALLVGPEGGFSPRELDVLRGASFSLGVGFGPRILRAETAAVVALSLWQATR--------GDGGLAP 250          
BLAST of NO06G04220 vs. NCBI_GenBank
Match: WP_024514128.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Bradyrhizobium sp. Tv2a-2])

HSP 1 Score: 141.0 bits (354), Expect = 1.100e-29
Identity = 101/290 (34.83%), Postives = 137/290 (47.24%), Query Frame = 0
Query:  224 RAPRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYI-CRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRRRL--VSLGPSVLRAETAGVVALGVYVAWREGKRAKKEG 511
            RAPRL+V DA LRPG  ++L  DQ +YL NV+RL AGA++  FN  DGEW   +                                     ++   + R P L   FAPLK AR+  + +KA E+G   LQPVLT +T V   + E    +M   ++EAAEQC  +S+ ++  PV     +   +    GRL I C E A        LE                +G    LIGPEGGF+ +E   +   R++  +SLGP +LRA+TA V AL V  A     RA+K G
Sbjct:    7 RAPRLFV-DAELRPGVAVALERDQSNYLGNVLRLAAGASILTFNGRDGEWQAEIAGRK-------------------------RPETLTAIKQTRPQDRLPDLTYAFAPLKHARLDYMVQKAVEMGAARLQPVLTRFTQVARVNGE----RMRANVIEAAEQCGILSVAEVAEPVPLERFLASRQ---AGRLLIFCDEAAEVANPLRALE------------HGAAHGGIDVLIGPEGGFAEEERTLLLRERQILRLSLGPRILRADTAAVAALAVVQAVLGDWRAEKSG 251          
BLAST of NO06G04220 vs. NCBI_GenBank
Match: WP_036512341.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Oceanicaulis sp. HL-87] >KPP80783.1 16S rRNA (uracil1498-N3)-methyltransferase [Oceanicaulis sp. HLUCCA04])

HSP 1 Score: 141.0 bits (354), Expect = 1.100e-29
Identity = 99/286 (34.62%), Postives = 131/286 (45.80%), Query Frame = 0
Query:  222 LQRAPRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRR--RLVSLGPSVLRAETAGVVALGVYVA----WR 502
            +   PRL+V DA L  GA I+L  +Q HYL NVMR   GA VR FN  DGEW   +  +S                                  +  E+   PPLRLCFAP+KK+R   + EKATELG + +QPV+T  T      T+ ++        EA EQ ER+ +P +  PVT   L+ +  +  G R+  C E       W   E                +G  + LIGPEGGF   E   +      R V+LGP +LRA+TA V AL ++ A    WR
Sbjct:    1 MSTTPRLFV-DAPLAEGAHITLPREQAHYLINVMRRETGAPVRIFNGRDGEWQAVVSEAS------------------------RKSAVLAVESRLREQTGVPPLRLCFAPVKKSRTDFIVEKATELGASAIQPVITRRTQSERVRTDRLMAL----ATEATEQTERLCLPDVSEPVTLERLLADWPQ--GERVIFCDESGEGEGAWGGPEGRARPMLDVLQAEPDPSGSWAILIGPEGGFDEHERAHLRSLSFVRAVTLGPRILRADTAAVTALALWQAVLGDWR 255          
The following BLAST results are available for this feature:
BLAST of NO06G04220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26412.15.800e-7648.65ribosomal rna small subunit methyltransferase e [N... [more]
WP_028879934.13.900e-3235.7616S rRNA (uracil(1498)-N(3))-methyltransferase [Te... [more]
WP_026873098.11.900e-3137.9416S rRNA (uracil(1498)-N(3))-methyltransferase [In... [more]
WP_027298648.11.900e-3138.0316S rRNA (uracil(1498)-N(3))-methyltransferase [Rh... [more]
WP_069189213.17.400e-3133.3316S rRNA (uracil(1498)-N(3))-methyltransferase [Te... [more]
PHR75686.17.400e-3135.5716S rRNA (uracil(1498)-N(3))-methyltransferase [He... [more]
WP_088156833.16.200e-3036.3016S rRNA (uracil(1498)-N(3))-methyltransferase [In... [more]
SBW07531.16.200e-3035.71Ribosomal RNA small subunit methyltransferase E [u... [more]
WP_024514128.11.100e-2934.8316S rRNA (uracil(1498)-N(3))-methyltransferase [Br... [more]
WP_036512341.11.100e-2934.6216S rRNA (uracil(1498)-N(3))-methyltransferase [Oc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000048NSK000048Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04220.1NO06G04220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533143gene_9595Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101542g1gene4114Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04220.1NO06G04220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04220 ID=NO06G04220|Name=NO06G04220|organism=Nannochloropsis oceanica|type=gene|length=1972bp
AAGGAAACACATTCTACCACAATTCGATCCAACAAAGGCTTGGAGCCCGC
ATCAGCATCGACAATAAGAAAGAACACACTTAACTTGACGGGGAAAAAGG
GCTTTGTCGCAATCTAACATAACGCACATTTATTGCTTGTCTTTTCATCT
TTCTGGTCTGAGTGTCCCAACGAAATAAATATACATTGTCATACATACAT
AGGGGGGTAGGAGGTTGACCTGCTCGCCTACGCTCCCCCTCTGGAGATGG
GCATGCACACTCATTCGACCGAACTCCACCATATTTCTATGAATCGGAAA
CGCTCAATCGGCTCGTATCGATCTCACGAAATCAACCAATGGTCTTTCGA
CCAGACTCGATGTCGTTCTAACAGAATTAGGAAACAACTGAAACATAAAC
GGCTTCGTGCGACCACTTCTACTTTGTCGCACTCTCGTACCTGCACTCTC
GTACCCCTGTTATCTATACCTCATACATTTGCACATTACAGGCTTACAAT
GATGCCTTCGCTTCTGCGGCCCTTCTCCCGCTTTAGACGGAGACCGCTTT
TTTTCCTCCGTACATCATCTCCGGCCCCCCAGCAGCCCCATCTCCTCGCC
TGCTGCCTGCCCCCGCCACTCCTCCTCCTCCTCCTACCTATTCTCGTCTC
AGCCCACTGCCTCGTCACCACCTCCACTGCGATAAATAGCAGCACCGAAT
CACCAACCCCCTCTTGTGCAAGAGCAGCACTCAGTTGCTTTGCCTTCTCC
ATCACCCGTCACCCTCCGTCCCCACGGCCTCCTTCCATGTTATCCAGGTC
TTCCTTGCCCTTATTCCCCCTCTCCTTCCAACGACGCTCAAATTTGGTTC
GTGCATATGGAGAAAGCAAGGGATCGCGAAACGACGGCAGCGATGGTGGA
TCAGCTGCACTGCAGgtatgcagcactgtatgtgggtctgtgtgcgttcc
cttcacttttccaatttaattcaagtgacgacccaaccatttccacggcc
ctcgtcccctctctttccaacacacagCGTGCTCCTCGTCTCTATGTTCC
TGATGCACTCCTTCGTCCTGGCGCGCCTATCAGCCTTTCTTCGGACCAGC
TTCATTATTTGCGTAATGTCATGCGCCTGCGCGCAGGGGCCGCCGTGCGT
GCGTTTAATGAAATGGATGGGGAGTGGGCATGTGCCCTTGTGAGCAGTAG
TGACGGGATAGGTGGAGAGGGAGGAAAGGGTGGAAGGGTAAAGAAAAATC
GTAGTGGAGGAGGGGGAGGAACGTTGTCGGTTGTGGCTCAAGAGAGGATG
AGGAAGGGAGGGGAGGAGGGACGGGAACCGCCGTTGCGCCTATGTTTCGC
GCCTCTAAAGAAGGCGAGGATGAAGACATTATTTGAGAAGGCGACGGAGT
TGGGCGTTACCCACCTGCAGCCTGTCCTGACTGAGTACACTGACGTGGTG
GAGACACACACAGAGGGGGTGTTGGGTAAGATGGAGGGAGGCCTGGTGGA
GGCTGCGGAGCAATGTGAAAGGATGAGCATCCCTCAAATTCTTCCGCCGG
TGACATTTGCGGCATTGATTGAGGAAGAAGAGGAGAAGATAGGGGGAAGG
TTGTATATTTGTAGAGAACGAGCGGGGGCACGGCCTATCTGGGAGGTACT
GGAAGAGGAGAAGGAGGAGGAGGAGGAGGAGGGAAATGGAGGAGAGGGAA
TGAACGGCGTGCCTTCCTTTCTAATTGGCCCGGAAGGAGGCTTTTCACCG
AAAGAGTTAAAGGCGATGGAAGGGAGGAGGAGATTGGTGTCCTTGGGGCC
CTCGGTCTTGCGGGCGGAGACGGCAGGGGTGGTTGCCTTGGGAGTGTATG
TGGCATGGCGCGAAGGGAAGAGGGCAAAGAAGGAAGGAAAGGGAGGAACG
ATTCCAGTAGAATGATGGCGATGTGGAGTAAAAACAGGAAAGAGAAAAGT
ACAAACTGGTATATTCACCAAA
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protein sequence of NO06G04220.1

>NO06G04220.1-protein ID=NO06G04220.1-protein|Name=NO06G04220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MGMHTHSTELHHISMNRKRSIGSYRSHEINQWSFDQTRCRSNRIRKQLKH
KRLRATTSTLSHSRTCTLVPLLSIPHTFAHYRLTMMPSLLRPFSRFRRRP
LFFLRTSSPAPQQPHLLACCLPPPLLLLLLPILVSAHCLVTTSTAINSST
ESPTPSCARAALSCFAFSITRHPPSPRPPSMLSRSSLPLFPLSFQRRSNL
VRAYGESKGSRNDGSDGGSAALQRAPRLYVPDALLRPGAPISLSSDQLHY
LRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGGEGGKGGRVKKNRSG
GGGGTLSVVAQERMRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGV
THLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTF
AALIEEEEEKIGGRLYICRERAGARPIWEVLEEEKEEEEEEGNGGEGMNG
VPSFLIGPEGGFSPKELKAMEGRRRLVSLGPSVLRAETAGVVALGVYVAW
REGKRAKKEGKGGTIPVE*
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