NO06G04220, NO06G04220 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G04220 vs. NCBI_GenBank
Match: EWM26412.1 (ribosomal rna small subunit methyltransferase e [Nannochloropsis gaditana]) HSP 1 Score: 294.7 bits (753), Expect = 5.800e-76 Identity = 180/370 (48.65%), Postives = 219/370 (59.19%), Query Frame = 0 Query: 149 STESPTPSCARAALSCFAFSIT-RHPPSPRPPSMLSRSSLPLFPLSFQRRSNLVRAYGESKGSRNDGSDGG--SAALQRAPRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGR----EPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLE--XXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRRRLVSLGPSVLRAETAGVVALGVYVAWREGKRAKKE 510 S S TPSC + F+F T RH P + R P+ P G+ SR+ SD S+ +QR+PRLYVP+ALL P+ +S+DQ HYL VMRLR GA VR FN DGEW + + + R+GG E R E LRLCFAPLK+AR+K LFEKATE+GVTHLQPVLTE+TDV H E ++ KMEGGLVEAAEQCER+ +P++LP +TF AL+EEE GGRLYICRER GARPI EVLE G PS +IGPEGGFSP+EL AM+G RLVSLGPSVLRAETAG+VA+GVYV W+E + +++ Sbjct: 92 SRASFTPSC---GFAIFSFPPTRRHVLIPSQTCLFWRCRFPVSP-----------PIGKYYSSRDKNSDFELVSSEVQRSPRLYVPEALLGKHVPVPISTDQRHYLLKVMRLRPGAYVRVFNRRDGEWIAVVADEAPDM--EPKREIGRSDKKRTRRGSDVSLIAKARIREGGGEQRNDEGESKLRLCFAPLKRARLKILFEKATEMGVTHLQPVLTEHTDVAPRHAEEMMKKMEGGLVEAAEQCERIGVPEVLPAMTFDALLEEERGG-GGRLYICREREGARPIMEVLERDWKEINEDRKNGKKEEHRGTPSIVIGPEGGFSPRELAAMKGHPRLVSLGPSVLRAETAGLVAVGVYVTWQEARSLRQK 444
BLAST of NO06G04220 vs. NCBI_GenBank
Match: WP_028879934.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Terasakiella pusilla]) HSP 1 Score: 149.1 bits (375), Expect = 3.900e-32 Identity = 103/288 (35.76%), Postives = 144/288 (50.00%), Query Frame = 0 Query: 227 RLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRRRL-----VSLGPSVLRAETAGVVALGVYVA----WREGKR 506 RLY+ DA L G + L++DQ HY+ NVMRL G V FNE GEWA +V + K + P L LCFAP+KK R+ + EKATELGV+ LQPV+T +T V + T+ ++ +EA+EQCER++IP + V+ A LI++ E+ RL++ ER GA PI + L G +FL GPEGGF EL + R+L +SLGP +LRA+TA + A+ + + W+E R Sbjct: 6 RLYL-DAALSAGHQVELTTDQAHYINNVMRLAVGDGVILFNECAGEWAAQIVDA------------------------RKKRCVVEVTEKLRDPEATPDLWLCFAPIKKQRLDFIIEKATELGVSTLQPVITRHTIVSKIRTD----RLHAQAIEASEQCERLNIPDVKDAVSLAQLIKDWPEE--RRLFVLDERGGALPIHDAL-------------MAHREGPHAFLTGPEGGFETSELDLL---RKLPFVTPISLGPRILRADTAALAAISCWQSVIGDWQEPLR 246
BLAST of NO06G04220 vs. NCBI_GenBank
Match: WP_026873098.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Inquilinus limosus]) HSP 1 Score: 146.7 bits (369), Expect = 1.900e-31 Identity = 107/282 (37.94%), Postives = 136/282 (48.23%), Query Frame = 0 Query: 219 SAALQRAPRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGR-LYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRR--RLVSLGPSVLRAETAGVVALGVY 498 S AL R RLYV DA L G ++LS Q H+LR V+RL GA +R FN DGEW L S G R+ EP L LCFAP+KK + + EK TELG LQPV T YTDV + L ++ V AAEQ ER+ +PQ+ PV AL+ GGR L +C E ARPI + +G + L+GPEGGF+P EL+A+ R V LGP +LRA+TA + AL ++ Sbjct: 3 SDALPRT-RLYV-DADLAAGRSVALSEAQAHHLRGVLRLAPGAGLRLFNPRDGEWLARLDGLSKAGG------------------------TALAERQLRPPAPEPDLWLCFAPVKKDAVDAVVEKGTELGAAVLQPVFTRYTDVQRVN----LDRLRAHAVAAAEQSERLDVPQVRDPVGLEALLAAWP---GGRTLLVCAEAGEARPIADA--------------AAETSGPAALLVGPEGGFAPAELEALIRHEFVRPVGLGPRILRADTAAIAALAIW 237
BLAST of NO06G04220 vs. NCBI_GenBank
Match: WP_027298648.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Rhodospirillales bacterium URHD0088]) HSP 1 Score: 146.7 bits (369), Expect = 1.900e-31 Identity = 108/284 (38.03%), Postives = 141/284 (49.65%), Query Frame = 0 Query: 225 APRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRR--RLVSLGPSVLRAETAGVVALGVYVA----WRE 503 A RL+VPD L GA ++L+ Q HYLRNV+RL GAA+ FN DGEW + DGI + ++ EP L L FAP+K+AR+ L EKATELGV L PV T T V + E +++ VEAAEQ ER+++P + PP T AL+ RL +C ER A PI +V+ + G + LIGPEGGF+ EL + VSLGP +LRA+TA + AL V+ A WRE Sbjct: 6 AARLHVPDD-LASGATLALAEGQAHYLRNVLRLGPGAALALFNGRDGEWRGRI----DGIA--------------------KGKCSVVLDAQTRKQREEPDLWLVFAPVKRARIDYLVEKATELGVAALYPVRTARTIVERVNRE----RLQANAVEAAEQTERLTVPIVRPPETLPALL--AGWNAARRLIVCDERGRAPPIADVV----------AGLRDRLGGGAAILIGPEGGFTETELDGLANLPFVNAVSLGPRILRADTAALAALAVFQAIAGDWRE 248
BLAST of NO06G04220 vs. NCBI_GenBank
Match: WP_069189213.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Terasakiella sp. PR1] >SCA57172.1 Ribosomal RNA small subunit methyltransferase E [Terasakiella sp. PR1]) HSP 1 Score: 144.8 bits (364), Expect = 7.400e-31 Identity = 91/273 (33.33%), Postives = 139/273 (50.92%), Query Frame = 0 Query: 227 RLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRRRLV--SLGPSVLRAETAGVVALGVY 498 RLY+ L+ G I L SDQ HY+ NVMRL+ G + FN +GEW+ + + +K ++ P L L FAP+KK R+ + EKATELGV+ QPV+T+ T V + T+ ++ +EA+EQCER++IP++L V+ LI++ + L++ E G++PI E L+ G +FL+GPEGGF P EL +E + +V S+GP +LRA+TA + A+ + Sbjct: 6 RLYIDSPLIEDGL-IELPSDQAHYVNNVMRLKVGDKLALFNGREGEWSATITQA------------------------RKKNCTLQVGKKTRQQESCPDLMLVFAPIKKQRLDFIMEKATELGVSRFQPVITKRTIVSKIRTD----RLHAQTIEASEQCERLNIPEVLEAVSLPQLIQDWSK--DRTLFVLNEHGGSKPILEGLQQFVGKSC----------GPCAFLVGPEGGFDPSELDLLEKLQNVVPLSVGPRILRADTAALAAISCW 237
BLAST of NO06G04220 vs. NCBI_GenBank
Match: PHR75686.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Henriciella sp.]) HSP 1 Score: 144.8 bits (364), Expect = 7.400e-31 Identity = 106/298 (35.57%), Postives = 139/298 (46.64%), Query Frame = 0 Query: 221 ALQRAPRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRRRL--VSLGPSVLRAETAGVVALGVYVA----WREGKRAKKEGKG 513 A+ PRL++ DA L GA +S +Q +YL VMRL G VR FN DGEW L S R+ + P L L FAPLKKAR + EKA ELGV +QPV+TE T + +++ ++EAAEQ ERM +P++ +T A +E + G LY C E ARP+ VLE G LIGPEGGFSPKE + + V+LGP +LRAETA V AL ++ + W+E + G G Sbjct: 3 AMSSVPRLFI-DADLAAGAATPVSDNQANYLLRVMRLSEGDEVRVFNGRDGEWLSRLRPES------------------------GKRASIVPERQTRPQVETPDLTLFFAPLKKARTDFVVEKACELGVRRIQPVMTERTQSSRVRRD----RLQSVVIEAAEQTERMDVPEVFDDITLQAALEAWPD--GQPLYYCDEAGDARPMRNVLE-------------EARGGAAGLLIGPEGGFSPKERDWIRKHPNIQPVTLGPRILRAETAVVAALTLWQSGVGDWQEHPYLPETGNG 256
BLAST of NO06G04220 vs. NCBI_GenBank
Match: WP_088156833.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Inquilinus limosus] >OWJ59449.1 16S rRNA (uracil(1498)-N(3))-methyltransferase [Inquilinus limosus]) HSP 1 Score: 141.7 bits (356), Expect = 6.200e-30 Identity = 102/281 (36.30%), Postives = 133/281 (47.33%), Query Frame = 0 Query: 219 SAALQRAPRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRR--RLVSLGPSVLRAETAGVVALGVY 498 S AL R RL+V DA L G ++LS Q H+LR V+RL GA +R FN DGEW L + + G R+ P L LCFAP+KK + + EK TELG LQPV T +TDV + L ++ V AAEQCER+ +P++ PV AL+ G L +C E ARP+ E G + L+GPEGGF+P EL A+ R V LGP +LRA+TA + AL V+ Sbjct: 3 SDALPRT-RLHV-DAPLGEGRAVALSEPQAHHLRGVLRLAPGAGLRLFNPRDGEWLARLETLTKAGG------------------------SALAERRLRPPAPAPDLWLCFAPVKKDAIDAVVEKGTELGAAVLQPVFTRFTDVQRVN----LDRLRAHAVAAAEQCERLDVPEVRDPVGLDALL--AGWPAGRILLVCAEAGAARPLAEAAAEAA--------------GPAALLVGPEGGFAPAELDALIRHEFVRPVGLGPRILRADTAAIAALAVW 237
BLAST of NO06G04220 vs. NCBI_GenBank
Match: SBW07531.1 (Ribosomal RNA small subunit methyltransferase E [uncultured Alphaproteobacteria bacterium]) HSP 1 Score: 141.7 bits (356), Expect = 6.200e-30 Identity = 105/294 (35.71%), Postives = 132/294 (44.90%), Query Frame = 0 Query: 225 APRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRRRL--VSLGPSVLRAETAGVVALGVYVAWREGKRAKKEGKGGTIP 517 APRLYVPDAL A + L+ Q HYLR+VMR+ G AVR FN DG W + + G G + EP + L FAPLK AR L EKA ELGV LQPVLTE T + E ++ + EAAEQCER+++P++ P + L+ G L+ E G G + L+GPEGGFSP+EL + G V GP +LRAETA VVAL ++ A R G GG P Sbjct: 8 APRLYVPDALAE-AADVPLAPAQAHYLRDVMRMAPGDAVRLFNGRDGAWLAEVAALGKGRGSLRVGACI------------------------APQRPEPGVWLLFAPLKSARQDMLVEKAVELGVAVLQPVLTERTQTRRVNPE----RLAAQVTEAAEQCERLTLPEVRPLAELSDLL--ARWPAGRTLFYGDETGGGGAALAAFSAPAGV------------GGDALLVGPEGGFSPRELDVLRGASFSLGVGFGPRILRAETAAVVALSLWQATR--------GDGGLAP 250
BLAST of NO06G04220 vs. NCBI_GenBank
Match: WP_024514128.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Bradyrhizobium sp. Tv2a-2]) HSP 1 Score: 141.0 bits (354), Expect = 1.100e-29 Identity = 101/290 (34.83%), Postives = 137/290 (47.24%), Query Frame = 0 Query: 224 RAPRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYI-CRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRRRL--VSLGPSVLRAETAGVVALGVYVAWREGKRAKKEG 511 RAPRL+V DA LRPG ++L DQ +YL NV+RL AGA++ FN DGEW + ++ + R P L FAPLK AR+ + +KA E+G LQPVLT +T V + E +M ++EAAEQC +S+ ++ PV + + GRL I C E A LE +G LIGPEGGF+ +E + R++ +SLGP +LRA+TA V AL V A RA+K G Sbjct: 7 RAPRLFV-DAELRPGVAVALERDQSNYLGNVLRLAAGASILTFNGRDGEWQAEIAGRK-------------------------RPETLTAIKQTRPQDRLPDLTYAFAPLKHARLDYMVQKAVEMGAARLQPVLTRFTQVARVNGE----RMRANVIEAAEQCGILSVAEVAEPVPLERFLASRQ---AGRLLIFCDEAAEVANPLRALE------------HGAAHGGIDVLIGPEGGFAEEERTLLLRERQILRLSLGPRILRADTAAVAALAVVQAVLGDWRAEKSG 251
BLAST of NO06G04220 vs. NCBI_GenBank
Match: WP_036512341.1 (16S rRNA (uracil(1498)-N(3))-methyltransferase [Oceanicaulis sp. HL-87] >KPP80783.1 16S rRNA (uracil1498-N3)-methyltransferase [Oceanicaulis sp. HLUCCA04]) HSP 1 Score: 141.0 bits (354), Expect = 1.100e-29 Identity = 99/286 (34.62%), Postives = 131/286 (45.80%), Query Frame = 0 Query: 222 LQRAPRLYVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALVSSSDGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKGGEEGREPPLRLCFAPLKKARMKTLFEKATELGVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPVTFAALIEEEEEKIGGRLYICRERAGARPIWEVLEXXXXXXXXXXXXXXXMNGVPSFLIGPEGGFSPKELKAMEGRR--RLVSLGPSVLRAETAGVVALGVYVA----WR 502 + PRL+V DA L GA I+L +Q HYL NVMR GA VR FN DGEW + +S + E+ PPLRLCFAP+KK+R + EKATELG + +QPV+T T T+ ++ EA EQ ER+ +P + PVT L+ + + G R+ C E W E +G + LIGPEGGF E + R V+LGP +LRA+TA V AL ++ A WR Sbjct: 1 MSTTPRLFV-DAPLAEGAHITLPREQAHYLINVMRRETGAPVRIFNGRDGEWQAVVSEAS------------------------RKSAVLAVESRLREQTGVPPLRLCFAPVKKSRTDFIVEKATELGASAIQPVITRRTQSERVRTDRLMAL----ATEATEQTERLCLPDVSEPVTLERLLADWPQ--GERVIFCDESGEGEGAWGGPEGRARPMLDVLQAEPDPSGSWAILIGPEGGFDEHERAHLRSLSFVRAVTLGPRILRADTAAVTALALWQAVLGDWR 255 The following BLAST results are available for this feature:
BLAST of NO06G04220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G04220 ID=NO06G04220|Name=NO06G04220|organism=Nannochloropsis oceanica|type=gene|length=1972bpback to top protein sequence of NO06G04220.1 >NO06G04220.1-protein ID=NO06G04220.1-protein|Name=NO06G04220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bpback to top Synonyms
Publications
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