jgi.p|Nanoce1779_2|533143, gene_9595 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533143
Unique Namegene_9595
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_31:17614..18636 -

Link to JBrowse

Properties
Property NameValue
TranscriptId533229
ProteinId533143
Product name16S ribosomal RNA methyltransferase RsmE
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:17614..18636 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL049ncniL049Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04220NO06G04220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533143mRNA_9595-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533143mRNA_9595Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|533143

>mRNA_9595-protein ID=mRNA_9595-protein|Name=jgi.p|Nanoce1779_2|533143|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MVDQLHCRYAALYVGLCAFPSLFQFNSSDDPTISTALVPSLSNTQRAPRL
YVPDALLRPGAPISLSSDQLHYLRNVMRLRAGAAVRAFNEMDGEWACALV
SSRGGGTLSVVAQERMRKGGEEGREPPLRLCFAPLKKARMKTLFEKATEL
GVTHLQPVLTEYTDVVETHTEGVLGKMEGGLVEAAEQCERMSIPQILPPV
TFAALIEEEEEKIGGRLYICRERAGARPIWEVLEEEKEEEEEEGNGGEGM
NGVPSFLIGPEGGFSPKELKAMEGRMRLVSLGPSVLRAETAGVVALGVYV
AWREGKRAKKEGKGGTIPVE*
back to top
Synonyms
Publications