NO06G04210, NO06G04210 (gene) Nannochloropsis oceanica

Overview
NameNO06G04210
Unique NameNO06G04210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2250
Alignment locationchr6:1172284..1174533 -

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Properties
Property NameValue
DescriptionRibosome-associated, Iojap
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1172284..1174533 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004394Iojap/RsfS/C7orf30
Homology
BLAST of NO06G04210 vs. NCBI_GenBank
Match: EWM26409.1 (Ribosome-associated, Iojap [Nannochloropsis gaditana])

HSP 1 Score: 314.7 bits (805), Expect = 3.500e-82
Identity = 195/276 (70.65%), Postives = 224/276 (81.16%), Query Frame = 0
Query:   12 KRRRDLHTSPPLAVTTTCMSLIVLGLV-LPMAPAFVLPFSSSIVPSANSHQLYSSPLFLPSRTQTTLYATGSELPPQRQKQKKGGREGYNKSRRREDALSGMNVGQRFEMGYDIEDETVPLEQDDALPLIETIANAADMRKGEDVYAIRVSSLTTVSSFFVLVSGNSRPQIQAIAGAIEDDMMEKHGMEARNGGEGTADSGWILLDFGSVVVNVMTPVARKYYALEKLWKKGEEVDLSHILKPNAXXXXXXXXXXXXXXXXXXXXXXXXLIEDAFW 287
            +RR D   SPP+   TT + L +L L   P   AF LP      P++   +  S+   +  R Q++LY++ S   PQR KQKKGGREGYN++RRRE+AL GM VG RFEMGYDIE+ETVPL +D+ LP+IETIA+AADMRKGEDV A+RVS LTTVSSFFVLVSGNSRPQIQAIAGAIE+DM+EKHG+E RNGGEGTADSGWILLD+GSVVVNVMTPVARK+YALEKLWK GEEVDLSHIL+PN  XXXXXXXXXXXXXXXXXXXXXX L+EDAFW
Sbjct:   12 QRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNGEEVDLSHILRPN--XXXXXXXXXXXXXXXXXXXXXXSLMEDAFW 285          
BLAST of NO06G04210 vs. NCBI_GenBank
Match: EWM26410.1 (Ribosome-associated, Iojap [Nannochloropsis gaditana])

HSP 1 Score: 288.9 bits (738), Expect = 2.100e-74
Identity = 155/230 (67.39%), Postives = 182/230 (79.13%), Query Frame = 0
Query:   12 KRRRDLHTSPPLAVTTTCMSLIVLGLV-LPMAPAFVLPFSSSIVPSANSHQLYSSPLFLPSRTQTTLYATGSELPPQRQKQKKGGREGYNKSRRREDALSGMNVGQRFEMGYDIEDETVPLEQDDALPLIETIANAADMRKGEDVYAIRVSSLTTVSSFFVLVSGNSRPQIQAIAGAIEDDMMEKHGMEARNGGEGTADSGWILLDFGSVVVNVMTPVARKYYALEKLWK 241
            +RR D   SPP+   TT + L +L L   P   AF LP      P++   +  S+   +  R Q++LY++ S   PQR KQKKGGREGYN++RRRE+AL GM VG RFEMGYDIE+ETVPL +D+ LP+IETIA+AADMRKGEDV A+RVS LTTVSSFFVLVSGNSRPQIQAIAGAIE+DM+EKHG+E RNGGEGTADSGWILLD+GSVVVNVMTPVARK+YALEKLWK
Sbjct:   12 QRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWK 241          
BLAST of NO06G04210 vs. NCBI_GenBank
Match: XP_005855870.1 (iojap-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20495.1 iojap-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 182.2 bits (461), Expect = 2.700e-42
Identity = 106/175 (60.57%), Postives = 127/175 (72.57%), Query Frame = 0
Query:   12 KRRRDLHTSPPLAVTTTCMSLIVLGLV-LPMAPAFVLPFSSSIVPSANSHQLYSSPLFLPSRTQTTLYATGSELPPQRQKQKKGGREGYNKSRRREDALSGMNVGQRFEMGYDIEDETVPLEQDDALPLIETIANAADMRKGEDVYAIRVSSLTTVSSFFVLVSGNSRPQIQAIA 186
            +RR D   SPP    TT + L +L L   P   AF LP      P++   +  S+   +  R Q++LY++ S   PQR KQKKGGREGYN++RRRE+AL GM VG RFEMGYDIE+ETVPL +D+ LP+IETIA+AADMRKGEDV A+RVS LTTVSSFFVLVSGNSRPQIQAIA
Sbjct:   12 QRRIDGDISPPNTTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIA 186          
BLAST of NO06G04210 vs. NCBI_GenBank
Match: XP_005840038.1 (hypothetical protein GUITHDRAFT_161153 [Guillardia theta CCMP2712] >EKX53058.1 hypothetical protein GUITHDRAFT_161153 [Guillardia theta CCMP2712])

HSP 1 Score: 127.9 bits (320), Expect = 6.100e-26
Identity = 62/126 (49.21%), Postives = 86/126 (68.25%), Query Frame = 0
Query:  130 PLEQDDALPLIETIANAADMRKGEDVYAIRVSSLTTVSSFFVLVSGNSRPQIQAIAGAIEDDMMEKHGMEARNGGEGTADSGWILLDFGSVVVNVMTPVARKYYALEKLWKKGEEVDLSHILKPNA 256
            PL +D +LPL++ I  A D RK E ++A RVS LT  + FF+   G+SRP +QAIA  +ED M EK+G E +   +G  DSGWILLD+G V+VN+MT  AR++Y LE+ W+ GE V L  ++ PN+
Sbjct:   58 PLAEDPSLPLVQDIIRAMDERKAESIWAARVSHLTYSTEFFINCQGSSRPMLQAIAANVEDIMNEKYGREIK--WQGNPDSGWILLDYGEVIVNIMTAAAREFYDLEEHWQNGELVPLEDLVTPNS 181          
BLAST of NO06G04210 vs. NCBI_GenBank
Match: CBN77507.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 124.4 bits (311), Expect = 6.800e-25
Identity = 60/124 (48.39%), Postives = 82/124 (66.13%), Query Frame = 0
Query:  131 LEQDDALPLIETIANAADMRKGEDVYAIRVSSLTTVSSFFVLVSGNSRPQIQAIAGAIEDDMMEKHGMEARNGGEGTADSGWILLDFGSVVVNVMTPVARKYYALEKLWKKGEEVDLSHILKPN 255
            +E D  LP + T   AAD RK  ++ AIRV++LT ++ F V++ GNSRPQ QAIA  IE+ M E H  + +   +G  +SGWILLD+G ++V++MTP +R YY LE  W  GE V L  +LKPN
Sbjct:   32 MEDDPTLPEVLTAVKAADERKAGNIVAIRVATLTVMTEFMVVLEGNSRPQNQAIAQNIEEKMEEMH--QRKTKSQGAPESGWILLDYGDIIVHIMTPKSRSYYDLESFWSNGERVPLDGVLKPN 153          
BLAST of NO06G04210 vs. NCBI_GenBank
Match: OEU12337.1 (DUF143-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 123.2 bits (308), Expect = 1.500e-24
Identity = 65/131 (49.62%), Postives = 91/131 (69.47%), Query Frame = 0
Query:  129 VPLEQDDALPLIETIANAADMRKGEDVYAIRVSSLTTVSSFFVLVSGNSRPQIQAIAGAIEDDMMEKHGM--EARNGGEGTADSGWILLDFGSVVVNVMTPVARKYYALEKLWKK--GEEVDLSHILKPNA 256
            VP EQD+   L+  I   AD RK +++ A+RVS ++TV+SF V+V+GNSRPQ QAIA  I+DD+ E+  +   A    EG+ADSGW LLD+GSV+V+VMTP +R +Y +E  WK   GE +D++  + PNA
Sbjct:   21 VPPEQDELAELVRCIVRGADGRKADNIVAMRVSKISTVTSFVVIVTGNSRPQNQAIAAVIKDDVNEEFALLPGATGVPEGSADSGWTLLDYGSVMVHVMTPKSRLFYNIEGKWKDQGGEIMDITAAILPNA 151          
BLAST of NO06G04210 vs. NCBI_GenBank
Match: GAX16758.1 (hypothetical protein FisN_21Hh205 [Fistulifera solaris])

HSP 1 Score: 120.6 bits (301), Expect = 9.800e-24
Identity = 64/140 (45.71%), Postives = 94/140 (67.14%), Query Frame = 0
Query:  120 MGYDIEDETVPLEQDDA-LPLIETIANAADMRKGEDVYAIRVSSLTTVSSFFVLVSGNSRPQIQAIAGAIEDDMMEKHGMEARNGG--EGTADSGWILLDFGSVVVNVMTPVARKYYALEKLWKK--GEEVDLSHILKPN 255
            M   + D+   +  D+  LPL+E I  AAD RK ED+ A++V+ ++T++S  V+VSGNSRPQ QAIA AI  D+ ++ G      G  EG+A+SGWILLD+GSV+V++MTP +R YY +E  WK+  G   ++ ++L PN
Sbjct:   77 MSSTVGDDKYSINTDETLLPLLECIVKAADGRKAEDIVALQVNHVSTLTSVLVIVSGNSRPQNQAIAAAITRDVQDELGQRPGGNGVPEGSAESGWILLDYGSVMVHIMTPKSRLYYNVEGQWKEKGGVATNIDYLLIPN 216          
BLAST of NO06G04210 vs. NCBI_GenBank
Match: CEM31303.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 120.2 bits (300), Expect = 1.300e-23
Identity = 60/130 (46.15%), Postives = 87/130 (66.92%), Query Frame = 0
Query:  125 EDETVPLEQDDALPLIETIANAADMRKGEDVYAIRVSSLTTVSSFFVLVSGNSRPQIQAIAGAIEDDMMEKHGMEARNGGEGTADSGWILLDFGSVVVNVMTPVARKYYALEKLWKK--GEEVDLSHILK 253
            E E  P+  D  +P I TIA A D+ K + + A+RV   + V+ F VL+ G+S PQ +AIA AIED M  KHG+EA+   +G+ D GW++LD+GS++VN+MTP  R+YY +E  W+K   E V L+H+L+
Sbjct:   28 EREADPVSHDPQVPTIYTIAEAGDLHKADGISAMRVKYCSDVTDFIVLMHGHSVPQNKAIANAIEDAMARKHGIEAKR-RDGSVDGGWLVLDYGSILVNIMTPKKREYYNMEGHWRKQGSEPVPLAHVLR 156          
BLAST of NO06G04210 vs. NCBI_GenBank
Match: GAX10502.1 (hypothetical protein FisN_21Lh205 [Fistulifera solaris])

HSP 1 Score: 119.8 bits (299), Expect = 1.700e-23
Identity = 63/140 (45.00%), Postives = 95/140 (67.86%), Query Frame = 0
Query:  120 MGYDIEDETVPLEQDDA-LPLIETIANAADMRKGEDVYAIRVSSLTTVSSFFVLVSGNSRPQIQAIAGAIEDDMMEKHGMEARNGG--EGTADSGWILLDFGSVVVNVMTPVARKYYALEKLWKK--GEEVDLSHILKPN 255
            M   + D+   +  D+  LPL+E I  AAD RK ED+ A++V+ ++T++S  V+VSGNSRPQ QAIA AI  D+ ++ G      G  EG+A+SGWILLD+G+V+V++MTP +R YY +E  WK+  G  +++ ++L PN
Sbjct:   77 MSSTVGDDEYSINTDETLLPLLECIVKAADGRKAEDIVALQVNHVSTLTSVLVIVSGNSRPQNQAIAAAITRDVQDELGQRPGGNGVPEGSAESGWILLDYGNVMVHIMTPKSRLYYNVEGQWKEKGGVAMNIDYLLIPN 216          
BLAST of NO06G04210 vs. NCBI_GenBank
Match: XP_005537723.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM81687.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 104.8 bits (260), Expect = 5.600e-19
Identity = 53/125 (42.40%), Postives = 80/125 (64.00%), Query Frame = 0
Query:  133 QDDALPLIETIANAADMRKGEDVYAIRVSSLTTVSSFFVLVSGNSRPQIQAIAGAIED---DMMEKHGMEARNGGEGTA---DSGWILLDFGSVVVNVMTPVARKYYALEKLWKKGEEVDLSHIL 252
            +D ++PL+     AAD RK +++ AIRVS LT V+SFFV  +G SR QI AIA  IE+   +++ +  + A   G   +    SGW+ +D+G V+VN+M+P AR YY ++ LW +GE VD+  +L
Sbjct:  142 EDPSMPLVRVCLEAADERKAQELTAIRVSHLTYVTSFFVFATGLSRTQISAIARRIEERVAEVLSRKPLSASFRGVNASPPGQSGWVTIDYGEVIVNIMSPEARSYYDMDTLWGRGEAVDVDRVL 266          
The following BLAST results are available for this feature:
BLAST of NO06G04210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26409.13.500e-8270.65Ribosome-associated, Iojap [Nannochloropsis gadita... [more]
EWM26410.12.100e-7467.39Ribosome-associated, Iojap [Nannochloropsis gadita... [more]
XP_005855870.12.700e-4260.57iojap-like protein, partial [Nannochloropsis gadit... [more]
XP_005840038.16.100e-2649.21hypothetical protein GUITHDRAFT_161153 [Guillardia... [more]
CBN77507.16.800e-2548.39conserved unknown protein [Ectocarpus siliculosus][more]
OEU12337.11.500e-2449.62DUF143-domain-containing protein [Fragilariopsis c... [more]
GAX16758.19.800e-2445.71hypothetical protein FisN_21Hh205 [Fistulifera sol... [more]
CEM31303.11.300e-2346.15unnamed protein product [Vitrella brassicaformis C... [more]
GAX10502.11.700e-2345.00hypothetical protein FisN_21Lh205 [Fistulifera sol... [more]
XP_005537723.15.600e-1942.40hypothetical protein, conserved [Cyanidioschyzon m... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR049ncniR049Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000053NSK000053Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G04210.1NO06G04210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|251295gene_9594Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100879g3gene4117Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G04210.1NO06G04210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G04210 ID=NO06G04210|Name=NO06G04210|organism=Nannochloropsis oceanica|type=gene|length=2250bp
ATGACTATACCATGCCAAGTCCCGGCGACCCCGAAGAGAAGAAGAGACCT
GCACACGTCTCCGCCGCTCGCCGTCACCACCACGTGCATGTCTCTCATCG
TGCTCGGCCTGGTACTACCCATGGCCCCAGCTTTCGTCCTTCCCTTCTCT
TCCAGCATTGTTCCTAGCGCCAACTCGCACCAGCTATATTCCTCACCGTT
GTTTCTGCCGTCTAGAACACAGgtaagtcttttcaccctcgccatttctt
gcctggacacaacatatcttactctgcctctctccctctctctctccctc
cctccctctccatccagACCACCCTCTACGCCACCGGCAGCGAGCTTCCC
CCGCAAAGACAGAAGCAAAAGAAGGGAGGACGGGAAGGATACAACAAAAG
TCGGCGGCGTGAGGATGCCTTAAGTGGCATGAATGTCGGGCAGAGGTTTG
AGATGGgtgagtgacgcaagggcggataggaggaagggttgagggttgat
agtcaagtcatagttcggatagcctctcgtttatagggacagggaatgaa
tgcgtctttatttctcatcacctctctccttactcctgcccttcctctct
catatccctctatcttgctcgaaagGCTATGACATCGAGGACGAGACCGT
TCCCCTCGAGCAAGACGACGCCCTCCCCCTCATAGAAACCATTGCCAATG
CCGCCGACATGCGGAAAGGCGAGGACGTGTACGCTATCCGCGTGTCTTCC
TTGACGACCGTATCGTCCTTTTTTGTGCTCGTCTCGGGGAACAGCCGGCC
GCAGATCCAGGCCATAGCCGgtacgtcgcgaacgtcatcaaccctcctcc
ttcatcactacttctgcctcgtcactactcctctcaccactgccttctca
tcacccctcctgcctcatcattgatcctctctcatcaccactcctcccta
atcactactcctctcaccacacctctctcatcatcactgcactttcatca
cccctcctccctcatcactactcctctctcatcatcacacctctctcatc
actactttctcatcactactcctctcaccactgcattctcgtcactactt
tcacatcatcactcctctctcgtcactactcctccttcatcgcctcatcc
tgcgcttgtttcctcttcctcctttgtcaaggcttttgctttcttcgatt
ctttacttggatctccccgagatcaggagatgacggtttggggcttgctc
cccataactttcacttatgttctcttccgccctccctcattccctccttc
cactcctcctctcccagGCGCCATCGAGGATGACATGATGGAGAAGCACG
GGATGGAAGCTCGGAACGGCGGGGAGGGCACAGCAGACAGCGGGTGGATC
CTGCTGGACTTCGGGAGCGTGGTAGTGAATGTGATGACGCCCGTGGCGAG
GAAATACTACGCGCTGGAAAAGCTGTGGAAAAAGgtaggtgtaggtgcat
gtgtgcgtgctccctccctccctccctcccttccttcctccctcccttcc
tccctccctccttcccatttcaatccccgtggagattggtgggatgcata
cattgacacttgtcttatccctccctccctccctccttccctccctccct
ccctccttccctcccgccctcctcctgcagGGCGAGGAGGTGGACTTGTC
CCACATACTGAAGCCAAACGCGCCTCCGGGGTCTGAGAATGGGATGGAGG
AAGGGAGGGAGGGAGGGAGGGAAGGGCCGTCCTCGGATCCTTCCTTAATC
GAGGATGCGTTCTGgtcctagagaggacgaaatgatgagatgagaaagga
agggagggagggggggagggaggacggtgttggtgatatgtgcatgcgag
tttatggttcttcccttttgacggaaggtgaagatagagaaagaagggaa
gcgagaaaatgaagtagaaagagaggaggaggaggaggaggaagaggagg
aggaggaggaggaaggcacacggccgagagcagccacgtaaagagaccaa
caagaatatgaagcaaaattattatcgaaagGCTGGAAAGGAAGAAAAAG
AAGAAGAAGAAAGAGGAACAAATCCGAAGCCTAAAGAAAGAGAGGAGGAG
GAGGAGAAAGCTAAAGGACGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTTGGTGA
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protein sequence of NO06G04210.1

>NO06G04210.1-protein ID=NO06G04210.1-protein|Name=NO06G04210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MTIPCQVPATPKRRRDLHTSPPLAVTTTCMSLIVLGLVLPMAPAFVLPFS
SSIVPSANSHQLYSSPLFLPSRTQTTLYATGSELPPQRQKQKKGGREGYN
KSRRREDALSGMNVGQRFEMGYDIEDETVPLEQDDALPLIETIANAADMR
KGEDVYAIRVSSLTTVSSFFVLVSGNSRPQIQAIAGAIEDDMMEKHGMEA
RNGGEGTADSGWILLDFGSVVVNVMTPVARKYYALEKLWKKGEEVDLSHI
LKPNAPPGSENGMEEGREGGREGPSSDPSLIEDAFWLERKKKKKKKEEQI
RSLKKERRRRRKLKDGGGGGGGGGGGGGGGGGGGGGGGGVW*
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Synonyms
Publications