NO06G04210.1, NO06G04210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G04210.1
Unique NameNO06G04210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1026
Alignment locationchr6:1172284..1174533 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:1172284..1174533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO06G04210.1 vs.
Match: EWM26409.1 (Ribosome-associated, Iojap [Nannochloropsis gaditana])

HSP 1 Score: 356.3 bits (913), Expect = 1.100e-94
Identity = 189/276 (68.48%), Postives = 219/276 (79.35%), Query Frame = 0 
Query:   12 KRRRDLHTSPPLAVTTTCMSLIVLGLV-LPMAPAFVLPFSSSIVPSANSHQLYSSPLFLPSRTQTTLYATGSELPPQRQKQKKGGREGYNKSRRREDALSGMNVGQRFEMGYDIEDETVPLEQDDALPLIETIANAADMRKGEDVYAIRVSSLTTVSSFFVLVSGNSRPQIQAIAGAIEDDMMEKHGMEARNGGEGTADSGWILLDFGSVVVNVMTPVARKYYALEKLWKKGEEVDLSHILKPNAPPGSENGMEEGREGGREGPSSDPSLIEDAFW 287
            +RR D   SPP+   TT + L +L L   P   AF LP      P++   +  S+   +  R Q++LY++ S   PQR KQKKGGREGYN++RRRE+AL GM VG RFEMGYDIE+ETVPL +D+ LP+IETIA+AADMRKGEDV A+RVS LTTVSSFFVLVSGNSRPQIQAIAGAIE+DM+EKHG+E RNGGEGTADSGWILLD+GSVVVNVMTPVARK+YALEKLWK GEEVDLSHIL+PN PPGSE G E GREG  +GP  DPSL+EDAFW
Sbjct:   12 QRRIDGDISPPITTFTTSVLLFLLALYPAPETSAFFLPSPICQSPASYIDRTGSAWSLVSPRPQSSLYSSESNNTPQRPKQKKGGREGYNRNRRREEALDGMKVGHRFEMGYDIEEETVPLAEDETLPVIETIASAADMRKGEDVLALRVSRLTTVSSFFVLVSGNSRPQIQAIAGAIEEDMLEKHGLEVRNGGEGTADSGWILLDYGSVVVNVMTPVARKFYALEKLWKNGEEVDLSHILRPNLPPGSEGGREGGREG--DGPGPDPSLMEDAFW 285
The following BLAST results are available for this feature:
BLAST of NO06G04210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26409.11.100e-9468.48Ribosome-associated, Iojap [Nannochloropsis gadita... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G04210NO06G04210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G04210.1NO06G04210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G04210.1.cds1NO06G04210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04210.1.cds2NO06G04210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04210.1.cds3NO06G04210.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04210.1.cds4NO06G04210.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04210.1.cds5NO06G04210.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G04210.1.cds6NO06G04210.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G04210.1 ID=NO06G04210.1|Name=NO06G04210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
ATGACTATACCATGCCAAGTCCCGGCGACCCCGAAGAGAAGAAGAGACCT
GCACACGTCTCCGCCGCTCGCCGTCACCACCACGTGCATGTCTCTCATCG
TGCTCGGCCTGGTACTACCCATGGCCCCAGCTTTCGTCCTTCCCTTCTCT
TCCAGCATTGTTCCTAGCGCCAACTCGCACCAGCTATATTCCTCACCGTT
GTTTCTGCCGTCTAGAACACAGACCACCCTCTACGCCACCGGCAGCGAGC
TTCCCCCGCAAAGACAGAAGCAAAAGAAGGGAGGACGGGAAGGATACAAC
AAAAGTCGGCGGCGTGAGGATGCCTTAAGTGGCATGAATGTCGGGCAGAG
GTTTGAGATGGGCTATGACATCGAGGACGAGACCGTTCCCCTCGAGCAAG
ACGACGCCCTCCCCCTCATAGAAACCATTGCCAATGCCGCCGACATGCGG
AAAGGCGAGGACGTGTACGCTATCCGCGTGTCTTCCTTGACGACCGTATC
GTCCTTTTTTGTGCTCGTCTCGGGGAACAGCCGGCCGCAGATCCAGGCCA
TAGCCGGCGCCATCGAGGATGACATGATGGAGAAGCACGGGATGGAAGCT
CGGAACGGCGGGGAGGGCACAGCAGACAGCGGGTGGATCCTGCTGGACTT
CGGGAGCGTGGTAGTGAATGTGATGACGCCCGTGGCGAGGAAATACTACG
CGCTGGAAAAGCTGTGGAAAAAGGGCGAGGAGGTGGACTTGTCCCACATA
CTGAAGCCAAACGCGCCTCCGGGGTCTGAGAATGGGATGGAGGAAGGGAG
GGAGGGAGGGAGGGAAGGGCCGTCCTCGGATCCTTCCTTAATCGAGGATG
CGTTCTGGCTGGAAAGGAAGAAAAAGAAGAAGAAGAAAGAGGAACAAATC
CGAAGCCTAAAGAAAGAGAGGAGGAGGAGGAGAAAGCTAAAGGACGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGTTTGGTGA
back to top

protein sequence of NO06G04210.1

>NO06G04210.1-protein ID=NO06G04210.1-protein|Name=NO06G04210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MTIPCQVPATPKRRRDLHTSPPLAVTTTCMSLIVLGLVLPMAPAFVLPFS
SSIVPSANSHQLYSSPLFLPSRTQTTLYATGSELPPQRQKQKKGGREGYN
KSRRREDALSGMNVGQRFEMGYDIEDETVPLEQDDALPLIETIANAADMR
KGEDVYAIRVSSLTTVSSFFVLVSGNSRPQIQAIAGAIEDDMMEKHGMEA
RNGGEGTADSGWILLDFGSVVVNVMTPVARKYYALEKLWKKGEEVDLSHI
LKPNAPPGSENGMEEGREGGREGPSSDPSLIEDAFWLERKKKKKKKEEQI
RSLKKERRRRRKLKDGGGGGGGGGGGGGGGGGGGGGGGGVW*
back to top

mRNA from alignment at chr6:1172284..1174533-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G04210.1 ID=NO06G04210.1|Name=NO06G04210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2250bp|location=Sequence derived from alignment at chr6:1172284..1174533- (Nannochloropsis oceanica)
ATGACTATACCATGCCAAGTCCCGGCGACCCCGAAGAGAAGAAGAGACCT
GCACACGTCTCCGCCGCTCGCCGTCACCACCACGTGCATGTCTCTCATCG
TGCTCGGCCTGGTACTACCCATGGCCCCAGCTTTCGTCCTTCCCTTCTCT
TCCAGCATTGTTCCTAGCGCCAACTCGCACCAGCTATATTCCTCACCGTT
GTTTCTGCCGTCTAGAACACAGGTAAGTCTTTTCACCCTCGCCATTTCTT
GCCTGGACACAACATATCTTACTCTGCCTCTCTCCCTCTCTCTCTCCCTC
CCTCCCTCTCCATCCAGACCACCCTCTACGCCACCGGCAGCGAGCTTCCC
CCGCAAAGACAGAAGCAAAAGAAGGGAGGACGGGAAGGATACAACAAAAG
TCGGCGGCGTGAGGATGCCTTAAGTGGCATGAATGTCGGGCAGAGGTTTG
AGATGGGTGAGTGACGCAAGGGCGGATAGGAGGAAGGGTTGAGGGTTGAT
AGTCAAGTCATAGTTCGGATAGCCTCTCGTTTATAGGGACAGGGAATGAA
TGCGTCTTTATTTCTCATCACCTCTCTCCTTACTCCTGCCCTTCCTCTCT
CATATCCCTCTATCTTGCTCGAAAGGCTATGACATCGAGGACGAGACCGT
TCCCCTCGAGCAAGACGACGCCCTCCCCCTCATAGAAACCATTGCCAATG
CCGCCGACATGCGGAAAGGCGAGGACGTGTACGCTATCCGCGTGTCTTCC
TTGACGACCGTATCGTCCTTTTTTGTGCTCGTCTCGGGGAACAGCCGGCC
GCAGATCCAGGCCATAGCCGGTACGTCGCGAACGTCATCAACCCTCCTCC
TTCATCACTACTTCTGCCTCGTCACTACTCCTCTCACCACTGCCTTCTCA
TCACCCCTCCTGCCTCATCATTGATCCTCTCTCATCACCACTCCTCCCTA
ATCACTACTCCTCTCACCACACCTCTCTCATCATCACTGCACTTTCATCA
CCCCTCCTCCCTCATCACTACTCCTCTCTCATCATCACACCTCTCTCATC
ACTACTTTCTCATCACTACTCCTCTCACCACTGCATTCTCGTCACTACTT
TCACATCATCACTCCTCTCTCGTCACTACTCCTCCTTCATCGCCTCATCC
TGCGCTTGTTTCCTCTTCCTCCTTTGTCAAGGCTTTTGCTTTCTTCGATT
CTTTACTTGGATCTCCCCGAGATCAGGAGATGACGGTTTGGGGCTTGCTC
CCCATAACTTTCACTTATGTTCTCTTCCGCCCTCCCTCATTCCCTCCTTC
CACTCCTCCTCTCCCAGGCGCCATCGAGGATGACATGATGGAGAAGCACG
GGATGGAAGCTCGGAACGGCGGGGAGGGCACAGCAGACAGCGGGTGGATC
CTGCTGGACTTCGGGAGCGTGGTAGTGAATGTGATGACGCCCGTGGCGAG
GAAATACTACGCGCTGGAAAAGCTGTGGAAAAAGGTAGGTGTAGGTGCAT
GTGTGCGTGCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTCCCTCCCTTCC
TCCCTCCCTCCTTCCCATTTCAATCCCCGTGGAGATTGGTGGGATGCATA
CATTGACACTTGTCTTATCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCT
CCCTCCTTCCCTCCCGCCCTCCTCCTGCAGGGCGAGGAGGTGGACTTGTC
CCACATACTGAAGCCAAACGCGCCTCCGGGGTCTGAGAATGGGATGGAGG
AAGGGAGGGAGGGAGGGAGGGAAGGGCCGTCCTCGGATCCTTCCTTAATC
GAGGATGCGTTCTGGTCCTAGAGAGGACGAAATGATGAGATGAGAAAGGA
AGGGAGGGAGGGGGGGAGGGAGGACGGTGTTGGTGATATGTGCATGCGAG
TTTATGGTTCTTCCCTTTTGACGGAAGGTGAAGATAGAGAAAGAAGGGAA
GCGAGAAAATGAAGTAGAAAGAGAGGAGGAGGAGGAGGAGGAAGAGGAGG
AGGAGGAGGAGGAAGGCACACGGCCGAGAGCAGCCACGTAAAGAGACCAA
CAAGAATATGAAGCAAAATTATTATCGAAAGGCTGGAAAGGAAGAAAAAG
AAGAAGAAGAAAGAGGAACAAATCCGAAGCCTAAAGAAAGAGAGGAGGAG
GAGGAGAAAGCTAAAGGACGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTTGGTGA
back to top

Coding sequence (CDS) from alignment at chr6:1172284..1174533-

>NO06G04210.1 ID=NO06G04210.1|Name=NO06G04210.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr6:1172284..1174533- (Nannochloropsis oceanica)
ATGACTATACCATGCCAAGTCCCGGCGACCCCGAAGAGAAGAAGAGACCT
GCACACGTCTCCGCCGCTCGCCGTCACCACCACGTGCATGTCTCTCATCG
TGCTCGGCCTGGTACTACCCATGGCCCCAGCTTTCGTCCTTCCCTTCTCT
TCCAGCATTGTTCCTAGCGCCAACTCGCACCAGCTATATTCCTCACCGTT
GTTTCTGCCGTCTAGAACACAGACCACCCTCTACGCCACCGGCAGCGAGC
TTCCCCCGCAAAGACAGAAGCAAAAGAAGGGAGGACGGGAAGGATACAAC
AAAAGTCGGCGGCGTGAGGATGCCTTAAGTGGCATGAATGTCGGGCAGAG
GTTTGAGATGGGCTATGACATCGAGGACGAGACCGTTCCCCTCGAGCAAG
ACGACGCCCTCCCCCTCATAGAAACCATTGCCAATGCCGCCGACATGCGG
AAAGGCGAGGACGTGTACGCTATCCGCGTGTCTTCCTTGACGACCGTATC
GTCCTTTTTTGTGCTCGTCTCGGGGAACAGCCGGCCGCAGATCCAGGCCA
TAGCCGGCGCCATCGAGGATGACATGATGGAGAAGCACGGGATGGAAGCT
CGGAACGGCGGGGAGGGCACAGCAGACAGCGGGTGGATCCTGCTGGACTT
CGGGAGCGTGGTAGTGAATGTGATGACGCCCGTGGCGAGGAAATACTACG
CGCTGGAAAAGCTGTGGAAAAAGGGCGAGGAGGTGGACTTGTCCCACATA
CTGAAGCCAAACGCGCCTCCGGGGTCTGAGAATGGGATGGAGGAAGGGAG
GGAGGGAGGGAGGGAAGGGCCGTCCTCGGATCCTTCCTTAATCGAGGATG
CGTTCTGGCTGGAAAGGAAGAAAAAGAAGAAGAAGAAAGAGGAACAAATC
CGAAGCCTAAAGAAAGAGAGGAGGAGGAGGAGAAAGCTAAAGGACGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGTTTGGTGA
back to top
Synonyms
Publications