|
|
Properties
| Property Name | Value |
|---|
| Description | Unknown protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr6 | genome | chr6:953861..956605 - |
Analyses
This gene is derived from or has results from the following analyses
Homology
BLAST of NO06G03450 vs. NCBI_GenBank
Match: EWM26337.1 (hypothetical protein Naga_100078g23 [Nannochloropsis gaditana]) HSP 1 Score: 82.4 bits (202), Expect = 7.200e-12 Identity = 53/147 (36.05%), Postives = 89/147 (60.54%), Query Frame = 0
Query: 651 RLSRAGKQVRLLGALSTLALCVGGMGPGVVVGSLVHLLVLSKLSTGERVWGRVGRTMAEMQGGVWALMASLVGEAMSLPALEGEEEVGIRTERLGGKTEEDEKMYMEVEEKGVANLVAALKKQQLRQEATKVKN---EYERLSSPLF 795
RLS + + G S + V G+GPG V+GSL+HLL+LS L++GE G+ +AE+QGG+WA+MAS++G+ ++LPA + E G + G+ E+ + E G++ L AAL++QQ +++ +++ E + +S LF
Sbjct: 164 RLSSREAKSQRRGMASAFSDVVSGVGPGAVLGSLLHLLLLSHLTSGEGERSIAGKALAEVQGGIWAVMASVLGDVIALPAFKEVGEAGWEEK---GRGAGQERGLTDEERDGLSTLAAALREQQQKKQEGYLRSPDAESDEQASALF 307 HSP 2 Score: 68.6 bits (166), Expect = 1.100e-7 Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 0
Query: 132 EEKRLQLPPVSLLDEYLPLLLEDIQRVDDEFDEELELMFDNLGASLGFPIPQ 184
EEKR+QLP VSLLDEYLPLLLEDIQ VD E D EL+ MF++L AS P P+
Sbjct: 112 EEKRVQLPQVSLLDEYLPLLLEDIQVVDQELDLELQQMFEDLYASPDLPSPR 163
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G03450 ID=NO06G03450|Name=NO06G03450|organism=Nannochloropsis oceanica|type=gene|length=2745bp
CAACAGGCACGAGCCAAACGATGCCTTCTCCATCAAGCCCCATGCGGCAC
TACCAACATCATCAGCATCAGCACCTTCGTCGACAACGCTGCGTCGCATG
GCCGCTCCTAGCCGCCGCCGCCGCCGCCTCATCCTCCAGCCTCCTCCTTA
CAGTTGAAGCGGTGGCCGCGGCAGCATCCGTGTCGTCCTTTCCTCCCGGT
GCCCGCCGGGGTGCCCGTCGTCCTCTCCCTGTGCCGCCCACGGCAGCTGC
ACAAGAGCCAGGGCAAGCGGACCTGTACACAGGAGTGCCGTCTTCTTCCC
CTCGTGATGGCGCCAATGAGCAGCAGGAGCACCAGCAATACCAGAATCAG
CAGTACAACCAACAACAGCAGGAAGCAAGGAGGGATGTAGGGCGGGAAGA
CGAAGATGCTTACGAGGAAAAACGCTTGCAGCTGCCGCCAGTGTCCCTGC
TAGATGAGTACTTGCCTTTATTACTAGAAGATATCCAGCGAGTCGATGAT
GAATTTGATGAAGAGCTCGAGCTCATGTTTGATAACTTGGGTGCGTCTTT
GGGGTTTCCAATCCCACAGAAGATGGGTGGGCCTCTTCCGTCGTCGTCTG
GTGCCCCTCTCCGTGGGAGAAACGAGATGAAGAAGAGGAAAAAACAGAAG
GCGGCGGTGGATGAGGAAGTATTGTCGCCGGGGGGAAAGGAAGACAGCGG
GACAAGTGGTGTGGAGGAGAAGGCGAGAGAGAAAGATGTACGAAGCGGGG
TTATCACAATGAAGGCACTCGCTCGACAGCGTCGTCGCTCGGTCGGGGCT
GCGGAGGCATCGTCTGTGTTAGAGGAGGGCGAAAACGAGGTGGAGATTTT
GTCGACAAAAAGCAAAAAAGCAAAAAAACGCAGCAACATTGGCAACATCA
TCAGCAGCAGCAGCAGCGTAAAGAAGGGGAGGACGACGAGGAAGGACGGG
AAGAGGGGAAGACTTGCTTTCGAGAGGAAGTCTCTCGCACAGCTGACAAG
TTCGACGAGCACTAAGAAGAAGAGCAAAAAGGCTAGAAAGAACGCCGGCT
TCCCGTCATCCCCCGCCTCTTCTCGCCGCCTCCTCTCCTCCTCTTCCTCT
CACCACAATCTCCGCAAAAACAAGAAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCGATTTCGCC
AGTCTTCCCTCCCCCTCACCCCCTCGCGTACCTCAGGCTGGGCGATGGCG
GGCGCGTCTATCTCCGGCTTTGGGTGGGCTTGCTTAGCCGTACAAGAGAT
CCAAAATGCCGGTCTTCAGAGCCAATACAATTACCTTCTCAACCCTACAC
AGGTTCTTCTCAGCCTGACTGTTGGGCCTGCTCTCATCTTCCTTCACGGG
GGAAAGCAGCTCATCTACCCCTCCTCCCTCTCTGCCTCCTCTCCCCTCTC
CCCACTCACCAATCATCGAGGCTCCTATTTTCTACTGGCCTTGACGTGGT
TCTCCCTCGTTTTCGCTGCATTTGGCTTGCTAACCTTGGCACAGACTCGT
CCTTCCTCCGTCATTGCAGTTGCCCTTCTAGTCCTCCCCCTCCTCCACAG
CACCCCGCACACGCACAACCCCTCGTACACAGACGAAGACGAATATGAGG
AGGAGGAGGAAGAGGGGGACGGAGACTCAACACCCTCCTCCCGGACCCGA
TCTTCTTCCAGCCTCATTTCCACCGGCGTTATCTCCGCCCTCCTCACCGT
CGGTCTTCCTTTGAGCTTGACAGAGGCAGGGCTGCTCCTCCGTTCCTCCC
CCCCTACCTCTACCTCGGGACATTCGTGGATTTGGAAATTGGGGTTTTTG
GGACTGTCTGTTGGACTGAGCCAGATGTCAGTCACTACCTTTCGAGATGC
CCAGGCACAGACGGAGGTATTGGGACAGGACGAGGAGGATGAGGAGGGGG
GGATGGAGGAGGGGGAGATGAGATTGAGTCGGGCAGGAAAACAAGTAAGG
TTATTGGGAGCGTTGTCGACGCTGGCATTGTGTGTGGGGGGGATGGGGCC
CGGGGTGGTGGTGGGCAGTTTGGTCCATTTGCTGGTGTTATCAAAATTAT
CGACGGGAGAGAGGGTGTGGGGGAGGGTGGGGAGGACGATGGCGGAGATG
CAGGGAGGGGTATGGGCATTGATGGCTTCATTGGTGGGGGAAGCGATGAG
CTTGCCGGCTTTGGAAGGGGAGGAGGAGGTAGGGATACGGACAGAGAGGC
TTGGGGGGAAGACGGAGGAGGATGAGAAAATGTATATGGAGGTGGAGGAG
AAAGGCGTTGCCAATTTGGTGGCGGCTTTGAAGAAACAGCAGCTACGGCA
AGAGGCCACCAAGGTCAAGAATGAGTACGAGCGATTATCATCCCCTTTAT
TCGCCTCCTCTCCTGTCTCGTCCTCCTCCACAGCGGTCAGCAGCAGCAGC
AGCGGCAGCAGCCGCGGATCATCAGAGGCGGAAGACGAGGAGCGCTTGGG
CTTGCCGTTGCCTCCTTCTTGACACTATTCATAATGACTCAAAAGATAAG
ATAAAACAGTAACTAGGAGGAGAAAGACAGAGAGAAAAAGGCGCAGTCCA
GTCTTATGTGTAATGTGATTTATTGTCGATTAAGGTCCCGATTTGAAATG
GAAAGGGAAAAGAATGAAGATGGAAGGACGACAAACAGAAGAGATACTGA
ACTCGATTGTGCTATAGCAAGATATGACATTGCAAGCGTGGTTGG back to topprotein sequence of NO06G03450.1 >NO06G03450.1-protein ID=NO06G03450.1-protein|Name=NO06G03450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=834bp
MPSPSSPMRHYQHHQHQHLRRQRCVAWPLLAAAAAASSSSLLLTVEAVAA
AASVSSFPPGARRGARRPLPVPPTAAAQEPGQADLYTGVPSSSPRDGANE
QQEHQQYQNQQYNQQQQEARRDVGREDEDAYEEKRLQLPPVSLLDEYLPL
LLEDIQRVDDEFDEELELMFDNLGASLGFPIPQKMGGPLPSSSGAPLRGR
NEMKKRKKQKAAVDEEVLSPGGKEDSGTSGVEEKAREKDVRSGVITMKAL
ARQRRRSVGAAEASSVLEEGENEVEILSTKSKKAKKRSNIGNIISSSSSV
KKGRTTRKDGKRGRLAFERKSLAQLTSSTSTKKKSKKARKNAGFPSSPAS
SRRLLSSSSSHHNLRKNKKQQQQQQQQQQQQQQQQQQQQQRFRQSSLPLT
PSRTSGWAMAGASISGFGWACLAVQEIQNAGLQSQYNYLLNPTQVLLSLT
VGPALIFLHGGKQLIYPSSLSASSPLSPLTNHRGSYFLLALTWFSLVFAA
FGLLTLAQTRPSSVIAVALLVLPLLHSTPHTHNPSYTDEDEYEEEEEEGD
GDSTPSSRTRSSSSLISTGVISALLTVGLPLSLTEAGLLLRSSPPTSTSG
HSWIWKLGFLGLSVGLSQMSVTTFRDAQAQTEVLGQDEEDEEGGMEEGEM
RLSRAGKQVRLLGALSTLALCVGGMGPGVVVGSLVHLLVLSKLSTGERVW
GRVGRTMAEMQGGVWALMASLVGEAMSLPALEGEEEVGIRTERLGGKTEE
DEKMYMEVEEKGVANLVAALKKQQLRQEATKVKNEYERLSSPLFASSPVS
SSSTAVSSSSSGSSRGSSEAEDEERLGLPLPPS* back to top
|