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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr6 | genome | chr6:953861..956605 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO06G03450.1 vs.
Match: EWM26337.1 (hypothetical protein Naga_100078g23 [Nannochloropsis gaditana]) HSP 1 Score: 88.2 bits (217), Expect = 1.300e-13 Identity = 80/207 (38.65%), Postives = 106/207 (51.21%), Query Frame = 0
Query: 18 HLRRQRCVAWPLLAAAAAASSSSLLLTVEAVAAAASVSSFPPGARRGARRPLPVPPTAAAQEPGQADLYTGVPSSSPRDGANEQQEHQQYQNQQYNQQ--QQEARRDVGREDEDAYEEKRLQLPPVSLLDEYLPLLLEDIQRVDDEFDEELELMFDNLGASLGFPIPQKMGGPLPSSSGAPLRGRNEMKKRKKQKAAVDEEVLSPGG 223
H RR+R V WPLLAAAAAASSS ++L A + +SS PP ARRG+RR P + + G R+G Q ++ Q+ R + D EEKR+QLP VSLLDEYLPLLLEDIQ VD E D EL+ MF++L AS P P+++ E K +++ A+ +V+S G
Sbjct: 9 HRRRRRRVTWPLLAAAAAASSSKVVLAAAATTTSPPLSSLPPAARRGSRRVPDAPIKPSRTQEG-------------REGHAPQALGRRSSRQESKPLGGTDGTTRRANDNNIDNTEEKRVQLPQVSLLDEYLPLLLEDIQVVDQELDLELQQMFEDLYASPDLPSPRRLSS-------------REAKSQRRGMASAFSDVVSGVG 189
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO06G03450.1 ID=NO06G03450.1|Name=NO06G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2745bp CAACAGGCACGAGCCAAACGATGCCTTCTCCATCAAGCCCCATGCGGCAC TACCAACATCATCAGCATCAGCACCTTCGTCGACAACGCTGCGTCGCATG GCCGCTCCTAGCCGCCGCCGCCGCCGCCTCATCCTCCAGCCTCCTCCTTA CAGTTGAAGCGGTGGCCGCGGCAGCATCCGTGTCGTCCTTTCCTCCCGGT GCCCGCCGGGGTGCCCGTCGTCCTCTCCCTGTGCCGCCCACGGCAGCTGC ACAAGAGCCAGGGCAAGCGGACCTGTACACAGGAGTGCCGTCTTCTTCCC CTCGTGATGGCGCCAATGAGCAGCAGGAGCACCAGCAATACCAGAATCAG CAGTACAACCAACAACAGCAGGAAGCAAGGAGGGATGTAGGGCGGGAAGA CGAAGATGCTTACGAGGAAAAACGCTTGCAGCTGCCGCCAGTGTCCCTGC TAGATGAGTACTTGCCTTTATTACTAGAAGATATCCAGCGAGTCGATGAT GAATTTGATGAAGAGCTCGAGCTCATGTTTGATAACTTGGGTGCGTCTTT GGGGTTTCCAATCCCACAGAAGATGGGTGGGCCTCTTCCGTCGTCGTCTG GTGCCCCTCTCCGTGGGAGAAACGAGATGAAGAAGAGGAAAAAACAGAAG GCGGCGGTGGATGAGGAAGTATTGTCGCCGGGGGGAAAGGAAGACAGCGG GACAAGTGGTGTGGAGGAGAAGGCGAGAGAGAAAGATGTACGAAGCGGGG TTATCACAATGAAGGCACTCGCTCGACAGCGTCGTCGCTCGGTCGGGGCT GCGGAGGCATCGTCTGTGTTAGAGGAGGGCGAAAACGAGGTGGAGATTTT GTCGACAAAAAGCAAAAAAGCAAAAAAACGCAGCAACATTGGCAACATCA TCAGCAGCAGCAGCAGCGTAAAGAAGGGGAGGACGACGAGGAAGGACGGG AAGAGGGGAAGACTTGCTTTCGAGAGGAAGTCTCTCGCACAGCTGACAAG TTCGACGAGCACTAAGAAGAAGAGCAAAAAGGCTAGAAAGAACGCCGGCT TCCCGTCATCCCCCGCCTCTTCTCGCCGCCTCCTCTCCTCCTCTTCCTCT CACCACAATCTCCGCAAAAACAAGAAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCGATTTCGCC AGTCTTCCCTCCCCCTCACCCCCTCGCGTACCTCAGGCTGGGCGATGGCG GGCGCGTCTATCTCCGGCTTTGGGTGGGCTTGCTTAGCCGTACAAGAGAT CCAAAATGCCGGTCTTCAGAGCCAATACAATTACCTTCTCAACCCTACAC AGGTTCTTCTCAGCCTGACTGTTGGGCCTGCTCTCATCTTCCTTCACGGG GGAAAGCAGCTCATCTACCCCTCCTCCCTCTCTGCCTCCTCTCCCCTCTC CCCACTCACCAATCATCGAGGCTCCTATTTTCTACTGGCCTTGACGTGGT TCTCCCTCGTTTTCGCTGCATTTGGCTTGCTAACCTTGGCACAGACTCGT CCTTCCTCCGTCATTGCAGTTGCCCTTCTAGTCCTCCCCCTCCTCCACAG CACCCCGCACACGCACAACCCCTCGTACACAGACGAAGACGAATATGAGG AGGAGGAGGAAGAGGGGGACGGAGACTCAACACCCTCCTCCCGGACCCGA TCTTCTTCCAGCCTCATTTCCACCGGCGTTATCTCCGCCCTCCTCACCGT CGGTCTTCCTTTGAGCTTGACAGAGGCAGGGCTGCTCCTCCGTTCCTCCC CCCCTACCTCTACCTCGGGACATTCGTGGATTTGGAAATTGGGGTTTTTG GGACTGTCTGTTGGACTGAGCCAGATGTCAGTCACTACCTTTCGAGATGC CCAGGCACAGACGGAGGTATTGGGACAGGACGAGGAGGATGAGGAGGGGG GGATGGAGGAGGGGGAGATGAGATTGAGTCGGGCAGGAAAACAAGTAAGG TTATTGGGAGCGTTGTCGACGCTGGCATTGTGTGTGGGGGGGATGGGGCC CGGGGTGGTGGTGGGCAGTTTGGTCCATTTGCTGGTGTTATCAAAATTAT CGACGGGAGAGAGGGTGTGGGGGAGGGTGGGGAGGACGATGGCGGAGATG CAGGGAGGGGTATGGGCATTGATGGCTTCATTGGTGGGGGAAGCGATGAG CTTGCCGGCTTTGGAAGGGGAGGAGGAGGTAGGGATACGGACAGAGAGGC TTGGGGGGAAGACGGAGGAGGATGAGAAAATGTATATGGAGGTGGAGGAG AAAGGCGTTGCCAATTTGGTGGCGGCTTTGAAGAAACAGCAGCTACGGCA AGAGGCCACCAAGGTCAAGAATGAGTACGAGCGATTATCATCCCCTTTAT TCGCCTCCTCTCCTGTCTCGTCCTCCTCCACAGCGGTCAGCAGCAGCAGC AGCGGCAGCAGCCGCGGATCATCAGAGGCGGAAGACGAGGAGCGCTTGGG CTTGCCGTTGCCTCCTTCTTGACACTATTCATAATGACTCAAAAGATAAG ATAAAACAGTAACTAGGAGGAGAAAGACAGAGAGAAAAAGGCGCAGTCCA GTCTTATGTGTAATGTGATTTATTGTCGATTAAGGTCCCGATTTGAAATG GAAAGGGAAAAGAATGAAGATGGAAGGACGACAAACAGAAGAGATACTGA ACTCGATTGTGCTATAGCAAGATATGACATTGCAAGCGTGGTTGG back to topprotein sequence of NO06G03450.1 >NO06G03450.1-protein ID=NO06G03450.1-protein|Name=NO06G03450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=834bp MPSPSSPMRHYQHHQHQHLRRQRCVAWPLLAAAAAASSSSLLLTVEAVAA AASVSSFPPGARRGARRPLPVPPTAAAQEPGQADLYTGVPSSSPRDGANE QQEHQQYQNQQYNQQQQEARRDVGREDEDAYEEKRLQLPPVSLLDEYLPL LLEDIQRVDDEFDEELELMFDNLGASLGFPIPQKMGGPLPSSSGAPLRGR NEMKKRKKQKAAVDEEVLSPGGKEDSGTSGVEEKAREKDVRSGVITMKAL ARQRRRSVGAAEASSVLEEGENEVEILSTKSKKAKKRSNIGNIISSSSSV KKGRTTRKDGKRGRLAFERKSLAQLTSSTSTKKKSKKARKNAGFPSSPAS SRRLLSSSSSHHNLRKNKKQQQQQQQQQQQQQQQQQQQQQRFRQSSLPLT PSRTSGWAMAGASISGFGWACLAVQEIQNAGLQSQYNYLLNPTQVLLSLT VGPALIFLHGGKQLIYPSSLSASSPLSPLTNHRGSYFLLALTWFSLVFAA FGLLTLAQTRPSSVIAVALLVLPLLHSTPHTHNPSYTDEDEYEEEEEEGD GDSTPSSRTRSSSSLISTGVISALLTVGLPLSLTEAGLLLRSSPPTSTSG HSWIWKLGFLGLSVGLSQMSVTTFRDAQAQTEVLGQDEEDEEGGMEEGEM RLSRAGKQVRLLGALSTLALCVGGMGPGVVVGSLVHLLVLSKLSTGERVW GRVGRTMAEMQGGVWALMASLVGEAMSLPALEGEEEVGIRTERLGGKTEE DEKMYMEVEEKGVANLVAALKKQQLRQEATKVKNEYERLSSPLFASSPVS SSSTAVSSSSSGSSRGSSEAEDEERLGLPLPPS* back to topmRNA from alignment at chr6:953861..956605- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO06G03450.1 ID=NO06G03450.1|Name=NO06G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2745bp|location=Sequence derived from alignment at chr6:953861..956605- (Nannochloropsis oceanica) CAACAGGCACGAGCCAAACGATGCCTTCTCCATCAAGCCCCATGCGGCAC
TACCAACATCATCAGCATCAGCACCTTCGTCGACAACGCTGCGTCGCATG
GCCGCTCCTAGCCGCCGCCGCCGCCGCCTCATCCTCCAGCCTCCTCCTTA
CAGTTGAAGCGGTGGCCGCGGCAGCATCCGTGTCGTCCTTTCCTCCCGGT
GCCCGCCGGGGTGCCCGTCGTCCTCTCCCTGTGCCGCCCACGGCAGCTGC
ACAAGAGCCAGGGCAAGCGGACCTGTACACAGGAGTGCCGTCTTCTTCCC
CTCGTGATGGCGCCAATGAGCAGCAGGAGCACCAGCAATACCAGAATCAG
CAGTACAACCAACAACAGCAGGAAGCAAGGAGGGATGTAGGGCGGGAAGA
CGAAGATGCTTACGAGGAAAAACGCTTGCAGCTGCCGCCAGTGTCCCTGC
TAGATGAGTACTTGCCTTTATTACTAGAAGATATCCAGCGAGTCGATGAT
GAATTTGATGAAGAGCTCGAGCTCATGTTTGATAACTTGGGTGCGTCTTT
GGGGTTTCCAATCCCACAGAAGATGGGTGGGCCTCTTCCGTCGTCGTCTG
GTGCCCCTCTCCGTGGGAGAAACGAGATGAAGAAGAGGAAAAAACAGAAG
GCGGCGGTGGATGAGGAAGTATTGTCGCCGGGGGGAAAGGAAGACAGCGG
GACAAGTGGTGTGGAGGAGAAGGCGAGAGAGAAAGATGTACGAAGCGGGG
TTATCACAATGAAGGCACTCGCTCGACAGCGTCGTCGCTCGGTCGGGGCT
GCGGAGGCATCGTCTGTGTTAGAGGAGGGCGAAAACGAGGTGGAGATTTT
GTCGACAAAAAGCAAAAAAGCAAAAAAACGCAGCAACATTGGCAACATCA
TCAGCAGCAGCAGCAGCGTAAAGAAGGGGAGGACGACGAGGAAGGACGGG
AAGAGGGGAAGACTTGCTTTCGAGAGGAAGTCTCTCGCACAGCTGACAAG
TTCGACGAGCACTAAGAAGAAGAGCAAAAAGGCTAGAAAGAACGCCGGCT
TCCCGTCATCCCCCGCCTCTTCTCGCCGCCTCCTCTCCTCCTCTTCCTCT
CACCACAATCTCCGCAAAAACAAGAAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCGATTTCGCC
AGTCTTCCCTCCCCCTCACCCCCTCGCGTACCTCAGGCTGGGCGATGGCG
GGCGCGTCTATCTCCGGCTTTGGGTGGGCTTGCTTAGCCGTACAAGAGAT
CCAAAATGCCGGTCTTCAGAGCCAATACAATTACCTTCTCAACCCTACAC
AGGTTCTTCTCAGCCTGACTGTTGGGCCTGCTCTCATCTTCCTTCACGGG
GGAAAGCAGCTCATCTACCCCTCCTCCCTCTCTGCCTCCTCTCCCCTCTC
CCCACTCACCAATCATCGAGGCTCCTATTTTCTACTGGCCTTGACGTGGT
TCTCCCTCGTTTTCGCTGCATTTGGCTTGCTAACCTTGGCACAGACTCGT
CCTTCCTCCGTCATTGCAGTTGCCCTTCTAGTCCTCCCCCTCCTCCACAG
CACCCCGCACACGCACAACCCCTCGTACACAGACGAAGACGAATATGAGG
AGGAGGAGGAAGAGGGGGACGGAGACTCAACACCCTCCTCCCGGACCCGA
TCTTCTTCCAGCCTCATTTCCACCGGCGTTATCTCCGCCCTCCTCACCGT
CGGTCTTCCTTTGAGCTTGACAGAGGCAGGGCTGCTCCTCCGTTCCTCCC
CCCCTACCTCTACCTCGGGACATTCGTGGATTTGGAAATTGGGGTTTTTG
GGACTGTCTGTTGGACTGAGCCAGATGTCAGTCACTACCTTTCGAGATGC
CCAGGCACAGACGGAGGTATTGGGACAGGACGAGGAGGATGAGGAGGGGG
GGATGGAGGAGGGGGAGATGAGATTGAGTCGGGCAGGAAAACAAGTAAGG
TTATTGGGAGCGTTGTCGACGCTGGCATTGTGTGTGGGGGGGATGGGGCC
CGGGGTGGTGGTGGGCAGTTTGGTCCATTTGCTGGTGTTATCAAAATTAT
CGACGGGAGAGAGGGTGTGGGGGAGGGTGGGGAGGACGATGGCGGAGATG
CAGGGAGGGGTATGGGCATTGATGGCTTCATTGGTGGGGGAAGCGATGAG
CTTGCCGGCTTTGGAAGGGGAGGAGGAGGTAGGGATACGGACAGAGAGGC
TTGGGGGGAAGACGGAGGAGGATGAGAAAATGTATATGGAGGTGGAGGAG
AAAGGCGTTGCCAATTTGGTGGCGGCTTTGAAGAAACAGCAGCTACGGCA
AGAGGCCACCAAGGTCAAGAATGAGTACGAGCGATTATCATCCCCTTTAT
TCGCCTCCTCTCCTGTCTCGTCCTCCTCCACAGCGGTCAGCAGCAGCAGC
AGCGGCAGCAGCCGCGGATCATCAGAGGCGGAAGACGAGGAGCGCTTGGG
CTTGCCGTTGCCTCCTTCTTGACACTATTCATAATGACTCAAAAGATAAG
ATAAAACAGTAACTAGGAGGAGAAAGACAGAGAGAAAAAGGCGCAGTCCA
GTCTTATGTGTAATGTGATTTATTGTCGATTAAGGTCCCGATTTGAAATG
GAAAGGGAAAAGAATGAAGATGGAAGGACGACAAACAGAAGAGATACTGA
ACTCGATTGTGCTATAGCAAGATATGACATTGCAAGCGTGGTTGG back to topCoding sequence (CDS) from alignment at chr6:953861..956605- >NO06G03450.1 ID=NO06G03450.1|Name=NO06G03450.1|organism=Nannochloropsis oceanica|type=CDS|length=2502bp|location=Sequence derived from alignment at chr6:953861..956605- (Nannochloropsis oceanica) ATGCCTTCTCCATCAAGCCCCATGCGGCACTACCAACATCATCAGCATCA GCACCTTCGTCGACAACGCTGCGTCGCATGGCCGCTCCTAGCCGCCGCCG CCGCCGCCTCATCCTCCAGCCTCCTCCTTACAGTTGAAGCGGTGGCCGCG GCAGCATCCGTGTCGTCCTTTCCTCCCGGTGCCCGCCGGGGTGCCCGTCG TCCTCTCCCTGTGCCGCCCACGGCAGCTGCACAAGAGCCAGGGCAAGCGG ACCTGTACACAGGAGTGCCGTCTTCTTCCCCTCGTGATGGCGCCAATGAG CAGCAGGAGCACCAGCAATACCAGAATCAGCAGTACAACCAACAACAGCA GGAAGCAAGGAGGGATGTAGGGCGGGAAGACGAAGATGCTTACGAGGAAA AACGCTTGCAGCTGCCGCCAGTGTCCCTGCTAGATGAGTACTTGCCTTTA TTACTAGAAGATATCCAGCGAGTCGATGATGAATTTGATGAAGAGCTCGA GCTCATGTTTGATAACTTGGGTGCGTCTTTGGGGTTTCCAATCCCACAGA AGATGGGTGGGCCTCTTCCGTCGTCGTCTGGTGCCCCTCTCCGTGGGAGA AACGAGATGAAGAAGAGGAAAAAACAGAAGGCGGCGGTGGATGAGGAAGT ATTGTCGCCGGGGGGAAAGGAAGACAGCGGGACAAGTGGTGTGGAGGAGA AGGCGAGAGAGAAAGATGTACGAAGCGGGGTTATCACAATGAAGGCACTC GCTCGACAGCGTCGTCGCTCGGTCGGGGCTGCGGAGGCATCGTCTGTGTT AGAGGAGGGCGAAAACGAGGTGGAGATTTTGTCGACAAAAAGCAAAAAAG CAAAAAAACGCAGCAACATTGGCAACATCATCAGCAGCAGCAGCAGCGTA AAGAAGGGGAGGACGACGAGGAAGGACGGGAAGAGGGGAAGACTTGCTTT CGAGAGGAAGTCTCTCGCACAGCTGACAAGTTCGACGAGCACTAAGAAGA AGAGCAAAAAGGCTAGAAAGAACGCCGGCTTCCCGTCATCCCCCGCCTCT TCTCGCCGCCTCCTCTCCTCCTCTTCCTCTCACCACAATCTCCGCAAAAA CAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAC AACAACAGCAGCAGCAGCAGCGATTTCGCCAGTCTTCCCTCCCCCTCACC CCCTCGCGTACCTCAGGCTGGGCGATGGCGGGCGCGTCTATCTCCGGCTT TGGGTGGGCTTGCTTAGCCGTACAAGAGATCCAAAATGCCGGTCTTCAGA GCCAATACAATTACCTTCTCAACCCTACACAGGTTCTTCTCAGCCTGACT GTTGGGCCTGCTCTCATCTTCCTTCACGGGGGAAAGCAGCTCATCTACCC CTCCTCCCTCTCTGCCTCCTCTCCCCTCTCCCCACTCACCAATCATCGAG GCTCCTATTTTCTACTGGCCTTGACGTGGTTCTCCCTCGTTTTCGCTGCA TTTGGCTTGCTAACCTTGGCACAGACTCGTCCTTCCTCCGTCATTGCAGT TGCCCTTCTAGTCCTCCCCCTCCTCCACAGCACCCCGCACACGCACAACC CCTCGTACACAGACGAAGACGAATATGAGGAGGAGGAGGAAGAGGGGGAC GGAGACTCAACACCCTCCTCCCGGACCCGATCTTCTTCCAGCCTCATTTC CACCGGCGTTATCTCCGCCCTCCTCACCGTCGGTCTTCCTTTGAGCTTGA CAGAGGCAGGGCTGCTCCTCCGTTCCTCCCCCCCTACCTCTACCTCGGGA CATTCGTGGATTTGGAAATTGGGGTTTTTGGGACTGTCTGTTGGACTGAG CCAGATGTCAGTCACTACCTTTCGAGATGCCCAGGCACAGACGGAGGTAT TGGGACAGGACGAGGAGGATGAGGAGGGGGGGATGGAGGAGGGGGAGATG AGATTGAGTCGGGCAGGAAAACAAGTAAGGTTATTGGGAGCGTTGTCGAC GCTGGCATTGTGTGTGGGGGGGATGGGGCCCGGGGTGGTGGTGGGCAGTT TGGTCCATTTGCTGGTGTTATCAAAATTATCGACGGGAGAGAGGGTGTGG GGGAGGGTGGGGAGGACGATGGCGGAGATGCAGGGAGGGGTATGGGCATT GATGGCTTCATTGGTGGGGGAAGCGATGAGCTTGCCGGCTTTGGAAGGGG AGGAGGAGGTAGGGATACGGACAGAGAGGCTTGGGGGGAAGACGGAGGAG GATGAGAAAATGTATATGGAGGTGGAGGAGAAAGGCGTTGCCAATTTGGT GGCGGCTTTGAAGAAACAGCAGCTACGGCAAGAGGCCACCAAGGTCAAGA ATGAGTACGAGCGATTATCATCCCCTTTATTCGCCTCCTCTCCTGTCTCG TCCTCCTCCACAGCGGTCAGCAGCAGCAGCAGCGGCAGCAGCCGCGGATC ATCAGAGGCGGAAGACGAGGAGCGCTTGGGCTTGCCGTTGCCTCCTTCTT GA back to top
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