NO06G03450, NO06G03450 (gene) Nannochloropsis oceanica

Overview
NameNO06G03450
Unique NameNO06G03450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2745
Alignment locationchr6:953861..956605 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:953861..956605 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G03450 vs. NCBI_GenBank
Match: EWM26337.1 (hypothetical protein Naga_100078g23 [Nannochloropsis gaditana])

HSP 1 Score: 82.4 bits (202), Expect = 7.200e-12
Identity = 53/147 (36.05%), Postives = 89/147 (60.54%), Query Frame = 0 
Query:  651 RLSRAGKQVRLLGALSTLALCVGGMGPGVVVGSLVHLLVLSKLSTGERVWGRVGRTMAEMQGGVWALMASLVGEAMSLPALEGEEEVGIRTERLGGKTEEDEKMYMEVEEKGVANLVAALKKQQLRQEATKVKN---EYERLSSPLF 795
            RLS    + +  G  S  +  V G+GPG V+GSL+HLL+LS L++GE      G+ +AE+QGG+WA+MAS++G+ ++LPA +   E G   +   G+    E+   + E  G++ L AAL++QQ +++   +++   E +  +S LF
Sbjct:  164 RLSSREAKSQRRGMASAFSDVVSGVGPGAVLGSLLHLLLLSHLTSGEGERSIAGKALAEVQGGIWAVMASVLGDVIALPAFKEVGEAGWEEK---GRGAGQERGLTDEERDGLSTLAAALREQQQKKQEGYLRSPDAESDEQASALF 307

HSP 2 Score: 68.6 bits (166), Expect = 1.100e-7
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 0 
Query:  132 EEKRLQLPPVSLLDEYLPLLLEDIQRVDDEFDEELELMFDNLGASLGFPIPQ 184
            EEKR+QLP VSLLDEYLPLLLEDIQ VD E D EL+ MF++L AS   P P+
Sbjct:  112 EEKRVQLPQVSLLDEYLPLLLEDIQVVDQELDLELQQMFEDLYASPDLPSPR 163
The following BLAST results are available for this feature:
BLAST of NO06G03450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400160018002000220024002600SequenceEWM26337.1
Match NameE-valueIdentityDescription
EWM26337.17.200e-1236.05hypothetical protein Naga_100078g23 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000133NSK000133Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03450.1NO06G03450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100078g23gene4190Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03450.1NO06G03450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03450 ID=NO06G03450|Name=NO06G03450|organism=Nannochloropsis oceanica|type=gene|length=2745bp
CAACAGGCACGAGCCAAACGATGCCTTCTCCATCAAGCCCCATGCGGCAC
TACCAACATCATCAGCATCAGCACCTTCGTCGACAACGCTGCGTCGCATG
GCCGCTCCTAGCCGCCGCCGCCGCCGCCTCATCCTCCAGCCTCCTCCTTA
CAGTTGAAGCGGTGGCCGCGGCAGCATCCGTGTCGTCCTTTCCTCCCGGT
GCCCGCCGGGGTGCCCGTCGTCCTCTCCCTGTGCCGCCCACGGCAGCTGC
ACAAGAGCCAGGGCAAGCGGACCTGTACACAGGAGTGCCGTCTTCTTCCC
CTCGTGATGGCGCCAATGAGCAGCAGGAGCACCAGCAATACCAGAATCAG
CAGTACAACCAACAACAGCAGGAAGCAAGGAGGGATGTAGGGCGGGAAGA
CGAAGATGCTTACGAGGAAAAACGCTTGCAGCTGCCGCCAGTGTCCCTGC
TAGATGAGTACTTGCCTTTATTACTAGAAGATATCCAGCGAGTCGATGAT
GAATTTGATGAAGAGCTCGAGCTCATGTTTGATAACTTGGGTGCGTCTTT
GGGGTTTCCAATCCCACAGAAGATGGGTGGGCCTCTTCCGTCGTCGTCTG
GTGCCCCTCTCCGTGGGAGAAACGAGATGAAGAAGAGGAAAAAACAGAAG
GCGGCGGTGGATGAGGAAGTATTGTCGCCGGGGGGAAAGGAAGACAGCGG
GACAAGTGGTGTGGAGGAGAAGGCGAGAGAGAAAGATGTACGAAGCGGGG
TTATCACAATGAAGGCACTCGCTCGACAGCGTCGTCGCTCGGTCGGGGCT
GCGGAGGCATCGTCTGTGTTAGAGGAGGGCGAAAACGAGGTGGAGATTTT
GTCGACAAAAAGCAAAAAAGCAAAAAAACGCAGCAACATTGGCAACATCA
TCAGCAGCAGCAGCAGCGTAAAGAAGGGGAGGACGACGAGGAAGGACGGG
AAGAGGGGAAGACTTGCTTTCGAGAGGAAGTCTCTCGCACAGCTGACAAG
TTCGACGAGCACTAAGAAGAAGAGCAAAAAGGCTAGAAAGAACGCCGGCT
TCCCGTCATCCCCCGCCTCTTCTCGCCGCCTCCTCTCCTCCTCTTCCTCT
CACCACAATCTCCGCAAAAACAAGAAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCGATTTCGCC
AGTCTTCCCTCCCCCTCACCCCCTCGCGTACCTCAGGCTGGGCGATGGCG
GGCGCGTCTATCTCCGGCTTTGGGTGGGCTTGCTTAGCCGTACAAGAGAT
CCAAAATGCCGGTCTTCAGAGCCAATACAATTACCTTCTCAACCCTACAC
AGGTTCTTCTCAGCCTGACTGTTGGGCCTGCTCTCATCTTCCTTCACGGG
GGAAAGCAGCTCATCTACCCCTCCTCCCTCTCTGCCTCCTCTCCCCTCTC
CCCACTCACCAATCATCGAGGCTCCTATTTTCTACTGGCCTTGACGTGGT
TCTCCCTCGTTTTCGCTGCATTTGGCTTGCTAACCTTGGCACAGACTCGT
CCTTCCTCCGTCATTGCAGTTGCCCTTCTAGTCCTCCCCCTCCTCCACAG
CACCCCGCACACGCACAACCCCTCGTACACAGACGAAGACGAATATGAGG
AGGAGGAGGAAGAGGGGGACGGAGACTCAACACCCTCCTCCCGGACCCGA
TCTTCTTCCAGCCTCATTTCCACCGGCGTTATCTCCGCCCTCCTCACCGT
CGGTCTTCCTTTGAGCTTGACAGAGGCAGGGCTGCTCCTCCGTTCCTCCC
CCCCTACCTCTACCTCGGGACATTCGTGGATTTGGAAATTGGGGTTTTTG
GGACTGTCTGTTGGACTGAGCCAGATGTCAGTCACTACCTTTCGAGATGC
CCAGGCACAGACGGAGGTATTGGGACAGGACGAGGAGGATGAGGAGGGGG
GGATGGAGGAGGGGGAGATGAGATTGAGTCGGGCAGGAAAACAAGTAAGG
TTATTGGGAGCGTTGTCGACGCTGGCATTGTGTGTGGGGGGGATGGGGCC
CGGGGTGGTGGTGGGCAGTTTGGTCCATTTGCTGGTGTTATCAAAATTAT
CGACGGGAGAGAGGGTGTGGGGGAGGGTGGGGAGGACGATGGCGGAGATG
CAGGGAGGGGTATGGGCATTGATGGCTTCATTGGTGGGGGAAGCGATGAG
CTTGCCGGCTTTGGAAGGGGAGGAGGAGGTAGGGATACGGACAGAGAGGC
TTGGGGGGAAGACGGAGGAGGATGAGAAAATGTATATGGAGGTGGAGGAG
AAAGGCGTTGCCAATTTGGTGGCGGCTTTGAAGAAACAGCAGCTACGGCA
AGAGGCCACCAAGGTCAAGAATGAGTACGAGCGATTATCATCCCCTTTAT
TCGCCTCCTCTCCTGTCTCGTCCTCCTCCACAGCGGTCAGCAGCAGCAGC
AGCGGCAGCAGCCGCGGATCATCAGAGGCGGAAGACGAGGAGCGCTTGGG
CTTGCCGTTGCCTCCTTCTTGACACTATTCATAATGACTCAAAAGATAAG
ATAAAACAGTAACTAGGAGGAGAAAGACAGAGAGAAAAAGGCGCAGTCCA
GTCTTATGTGTAATGTGATTTATTGTCGATTAAGGTCCCGATTTGAAATG
GAAAGGGAAAAGAATGAAGATGGAAGGACGACAAACAGAAGAGATACTGA
ACTCGATTGTGCTATAGCAAGATATGACATTGCAAGCGTGGTTGG
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protein sequence of NO06G03450.1

>NO06G03450.1-protein ID=NO06G03450.1-protein|Name=NO06G03450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=834bp
MPSPSSPMRHYQHHQHQHLRRQRCVAWPLLAAAAAASSSSLLLTVEAVAA
AASVSSFPPGARRGARRPLPVPPTAAAQEPGQADLYTGVPSSSPRDGANE
QQEHQQYQNQQYNQQQQEARRDVGREDEDAYEEKRLQLPPVSLLDEYLPL
LLEDIQRVDDEFDEELELMFDNLGASLGFPIPQKMGGPLPSSSGAPLRGR
NEMKKRKKQKAAVDEEVLSPGGKEDSGTSGVEEKAREKDVRSGVITMKAL
ARQRRRSVGAAEASSVLEEGENEVEILSTKSKKAKKRSNIGNIISSSSSV
KKGRTTRKDGKRGRLAFERKSLAQLTSSTSTKKKSKKARKNAGFPSSPAS
SRRLLSSSSSHHNLRKNKKQQQQQQQQQQQQQQQQQQQQQRFRQSSLPLT
PSRTSGWAMAGASISGFGWACLAVQEIQNAGLQSQYNYLLNPTQVLLSLT
VGPALIFLHGGKQLIYPSSLSASSPLSPLTNHRGSYFLLALTWFSLVFAA
FGLLTLAQTRPSSVIAVALLVLPLLHSTPHTHNPSYTDEDEYEEEEEEGD
GDSTPSSRTRSSSSLISTGVISALLTVGLPLSLTEAGLLLRSSPPTSTSG
HSWIWKLGFLGLSVGLSQMSVTTFRDAQAQTEVLGQDEEDEEGGMEEGEM
RLSRAGKQVRLLGALSTLALCVGGMGPGVVVGSLVHLLVLSKLSTGERVW
GRVGRTMAEMQGGVWALMASLVGEAMSLPALEGEEEVGIRTERLGGKTEE
DEKMYMEVEEKGVANLVAALKKQQLRQEATKVKNEYERLSSPLFASSPVS
SSSTAVSSSSSGSSRGSSEAEDEERLGLPLPPS*
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Synonyms
Publications