NO06G03240, NO06G03240 (gene) Nannochloropsis oceanica

Overview
NameNO06G03240
Unique NameNO06G03240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length865
Alignment locationchr6:906199..907063 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:906199..907063 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO06G03240 vs. NCBI_GenBank
Match: EWM20145.1 (hypothetical protein Naga_101508g3 [Nannochloropsis gaditana])

HSP 1 Score: 66.2 bits (160), Expect = 1.500e-7
Identity = 90/226 (39.82%), Postives = 104/226 (46.02%), Query Frame = 0 
Query:    1 MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 227
            ML     KAGAM  RG                   L   GKGRVLRG F S   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ EIK IES++                                              XXXXXXXXXXXXXXXXXXXXXXXX           R+K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:   37 MLRRFTAKAGAMARRG-----------------STLPGPGKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEIKYIESKA----------------------------------------AAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEEKEEE 205
[Close]
BLAST of NO06G03240 vs. NCBI_GenBank
Match: EWM20146.1 (hypothetical protein Naga_101508g1 [Nannochloropsis gaditana])

HSP 1 Score: 66.2 bits (160), Expect = 1.500e-7
Identity = 80/187 (42.78%), Postives = 94/187 (50.27%), Query Frame = 0 
Query:   40 GKGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNGVSEEDEK 227
            GKGRVLRG F S   TG  TSS  E GK     +Q IG V  VAG+TA  V   DQ EIK IES++                                              XXXXXXXXXXXXXXXXXXXXXXXX           R+K ++QLA+T+DYEPYQAA+   R K  G  G+ E++E+
Sbjct:    7 GKGRVLRGGFYSTAHTGPGTSSGEELGKKWATFFQGIGAVLGVAGATAVVVRTFDQTEIKYIESKA----------------------------------------AAEIAQXXXXXXXXXXXXXXXXXXXXXXXXMSEVFWKAEVERFKREVQLAYTQDYEPYQAALMDKRKKRGGTGGLEEKEEE 153
The following BLAST results are available for this feature:
BLAST of NO06G03240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM20145.11.500e-739.82hypothetical protein Naga_101508g3 [Nannochloropsi... [more]
EWM20146.11.500e-742.78hypothetical protein Naga_101508g1 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR029ncniR029Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G03240.1NO06G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G03240.1NO06G03240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G03240 ID=NO06G03240|Name=NO06G03240|organism=Nannochloropsis oceanica|type=gene|length=865bp
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGgtaaggggtgttgggaggggggggggggaacg
tttggtgcacgcgaccgcatactgcccgagggatgttggttcgtttttat
ctgcacgtctatctcgtttgaggtgcaatctgtgttgtgcggacaagggc
cggtgccaaggtgctcatgcacgagcacattcatacacgccgacagGGAA
GGGACGCGTACTGCGAGGGGCATTCTCCTCGGCTACCGACACGGGGGCGC
GCACGAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAG
CCCATTGGTGTGGTGGCCGCGGTTGCGGGCTCTACCGCTTACGGCGTCCA
CCATCTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGG
AGGTTGCTCGTATCCAGGGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAG
GAGAAGGCGGCGACGGAGATTGCTCGTATCGAAAGCGACCGAGCGCGTAT
CCAGGACAAGGCGGCGACGGAGATTGCTAGTATCGAAAGCGACCGAGCGC
GTATCCAGGACAAGGCGGCGACGGAGATTGCTCATATCGAAAGCGACCGA
AAGTTGTCAGAGCTTTTCTGGAAGGCAGAGGTAGAGCGGTACAAGCACGA
CCTCCAACTTGCGCACACGGAAGACTATGAGCCCTATCAGGCGGCAGTTT
CGAAGACAAGAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGGAGGAT
GAGAAGAAGGGCTAG
back to top

protein sequence of NO06G03240.1

>NO06G03240.1-protein ID=NO06G03240.1-protein|Name=NO06G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFS
SATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKR
IESESKSEVARIQGESKSEVARIQEKAATEIARIESDRARIQDKAATEIA
SIESDRARIQDKAATEIAHIESDRKLSELFWKAEVERYKHDLQLAHTEDY
EPYQAAVSKTRNKTRGGNGVSEEDEKKG*
back to top
Synonyms
Publications