NO06G03240.1, NO06G03240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G03240.1
Unique NameNO06G03240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length687
Alignment locationchr6:906199..907063 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:906199..907063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G03240.1 vs.
Match: EWM20226.1 (hypothetical protein Naga_100681g5 [Nannochloropsis gaditana])

HSP 1 Score: 155.2 bits (391), Expect = 2.400e-34
Identity = 108/222 (48.65%), Postives = 141/222 (63.51%), Query Frame = 0 
Query:    1 MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFSSATDTGARTSSRGESGKPLK---GDYQPIGVVAAVAGSTAYGVHHLDQMEIKRIESESKSEVARIQGESKSEVARIQEKAATEIARIESDRARIQDKAATEIASIESDRARIQDKAATEIAHIESDRKLSELFWKAEVERYKHDLQLAHTEDYEPYQAAVSKTRNKTRGGNG 220
            ML S ATKAGAM WR    ++SG+               GKGR LRGA  S T TG  T S G S   +K        +G+VAAVAGSTA  VHHLDQ EIKRI+ ++ ++VAR Q    +E+ RIQ+KAATEI RI        DKAATEIA  ++D AR++ +  +E+A +E +R+LSE   +AEVERYK+DL+L  T+D++PYQAA+ + + K RGG G
Sbjct:   24 MLCSLATKAGAMAWRR--GAQSGR---------------GKGRRLRGASLSTTHTGTGTGSEGGSVTTIKIVTVTVAVLGLVAAVAGSTAVAVHHLDQTEIKRIQDKATADVARDQ----TEIKRIQDKAATEIKRIH-------DKAATEIAQAKADVARVEGERKSEVARVEGERRLSEERLRAEVERYKYDLRLTQTQDFKPYQAAIRENQIK-RGGAG 216
The following BLAST results are available for this feature:
BLAST of NO06G03240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20226.12.400e-3448.65hypothetical protein Naga_100681g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G03240NO06G03240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G03240.1NO06G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G03240.1.cds1NO06G03240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO06G03240.1.cds2NO06G03240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G03240.1 ID=NO06G03240.1|Name=NO06G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=687bp
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGGAAGGGACGCGTACTGCGAGGGGCATTCTCC
TCGGCTACCGACACGGGGGCGCGCACGAGCAGTAGAGGGGAGTCTGGAAA
GCCCTTGAAGGGAGATTACCAGCCCATTGGTGTGGTGGCCGCGGTTGCGG
GCTCTACCGCTTACGGCGTCCACCATCTTGACCAGATGGAGATAAAGCGC
ATCGAGAGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGGTGAGAGCAA
GTCGGAGGTTGCTCGTATCCAGGAGAAGGCGGCGACGGAGATTGCTCGTA
TCGAAAGCGACCGAGCGCGTATCCAGGACAAGGCGGCGACGGAGATTGCT
AGTATCGAAAGCGACCGAGCGCGTATCCAGGACAAGGCGGCGACGGAGAT
TGCTCATATCGAAAGCGACCGAAAGTTGTCAGAGCTTTTCTGGAAGGCAG
AGGTAGAGCGGTACAAGCACGACCTCCAACTTGCGCACACGGAAGACTAT
GAGCCCTATCAGGCGGCAGTTTCGAAGACAAGAAATAAAACAAGGGGAGG
AAACGGAGTATCCGAGGAGGATGAGAAGAAGGGCTAG
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protein sequence of NO06G03240.1

>NO06G03240.1-protein ID=NO06G03240.1-protein|Name=NO06G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGRVLRGAFS
SATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGVHHLDQMEIKR
IESESKSEVARIQGESKSEVARIQEKAATEIARIESDRARIQDKAATEIA
SIESDRARIQDKAATEIAHIESDRKLSELFWKAEVERYKHDLQLAHTEDY
EPYQAAVSKTRNKTRGGNGVSEEDEKKG*
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mRNA from alignment at chr6:906199..907063+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G03240.1 ID=NO06G03240.1|Name=NO06G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=865bp|location=Sequence derived from alignment at chr6:906199..907063+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGTAAGGGGTGTTGGGAGGGGGGGGGGGGAACG
TTTGGTGCACGCGACCGCATACTGCCCGAGGGATGTTGGTTCGTTTTTAT
CTGCACGTCTATCTCGTTTGAGGTGCAATCTGTGTTGTGCGGACAAGGGC
CGGTGCCAAGGTGCTCATGCACGAGCACATTCATACACGCCGACAGGGAA
GGGACGCGTACTGCGAGGGGCATTCTCCTCGGCTACCGACACGGGGGCGC
GCACGAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAG
CCCATTGGTGTGGTGGCCGCGGTTGCGGGCTCTACCGCTTACGGCGTCCA
CCATCTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGG
AGGTTGCTCGTATCCAGGGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAG
GAGAAGGCGGCGACGGAGATTGCTCGTATCGAAAGCGACCGAGCGCGTAT
CCAGGACAAGGCGGCGACGGAGATTGCTAGTATCGAAAGCGACCGAGCGC
GTATCCAGGACAAGGCGGCGACGGAGATTGCTCATATCGAAAGCGACCGA
AAGTTGTCAGAGCTTTTCTGGAAGGCAGAGGTAGAGCGGTACAAGCACGA
CCTCCAACTTGCGCACACGGAAGACTATGAGCCCTATCAGGCGGCAGTTT
CGAAGACAAGAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGGAGGAT
GAGAAGAAGGGCTAG
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Coding sequence (CDS) from alignment at chr6:906199..907063+

>NO06G03240.1 ID=NO06G03240.1|Name=NO06G03240.1|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at chr6:906199..907063+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCGCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGGAAGGGACGCGTACTGCGAGGGGCATTCTCC
TCGGCTACCGACACGGGGGCGCGCACGAGCAGTAGAGGGGAGTCTGGAAA
GCCCTTGAAGGGAGATTACCAGCCCATTGGTGTGGTGGCCGCGGTTGCGG
GCTCTACCGCTTACGGCGTCCACCATCTTGACCAGATGGAGATAAAGCGC
ATCGAGAGTGAGAGCAAGTCGGAGGTTGCTCGTATCCAGGGTGAGAGCAA
GTCGGAGGTTGCTCGTATCCAGGAGAAGGCGGCGACGGAGATTGCTCGTA
TCGAAAGCGACCGAGCGCGTATCCAGGACAAGGCGGCGACGGAGATTGCT
AGTATCGAAAGCGACCGAGCGCGTATCCAGGACAAGGCGGCGACGGAGAT
TGCTCATATCGAAAGCGACCGAAAGTTGTCAGAGCTTTTCTGGAAGGCAG
AGGTAGAGCGGTACAAGCACGACCTCCAACTTGCGCACACGGAAGACTAT
GAGCCCTATCAGGCGGCAGTTTCGAAGACAAGAAATAAAACAAGGGGAGG
AAACGGAGTATCCGAGGAGGATGAGAAGAAGGGCTAG
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Synonyms
Publications