NO06G01800, NO06G01800 (gene) Nannochloropsis oceanica

Overview
NameNO06G01800
Unique NameNO06G01800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2021
Alignment locationchr6:548591..550611 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:548591..550611 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO06G01800 vs. NCBI_GenBank
Match: EWM26230.1 (hypothetical protein Naga_100025g10 [Nannochloropsis gaditana])

HSP 1 Score: 533.9 bits (1374), Expect = 6.100e-148
Identity = 292/553 (52.80%), Postives = 362/553 (65.46%), Query Frame = 0 
Query:    2 TKKHQKGKQKRRLFERSETP--TDDDGFPTSSSCSASSPAFS------CEGPAPPTCVDDAYTYESRSATSRHRIGXXXXXXXXXXXXXXXXXXXXXSWKVEANXXXXXXXXXXXXXXXGNNGSQCSDKDHPHWPAGNSAKWDTLAAPKMHLYEGIAGLFEDNEHAIGRTYTEAALEHWRGLTVASKAKILSGVSREDVYDSLREVEITTQFPVEGEPREETARKVAEQFLHAMEVTDGVFKFPHAPTLEFVGFFACLETNLLMSMEESKIKNEAAMVLFLLLWRQSWWLYGFVPLLLLLLLENKWCTTMRAWVWEGMWHGFCGRRRWQPYVRWKVEAYMVAALSIVMSSQERKRWYYLSVILTVAAV-FLDYQSASTRSGMVDSTTLVNTRQLLLHLQKFLLLLLAYPRYIDFLSIGFYYFPTVFILVLSSIYFLVGFGIQLFWRLVRVKVMSRFPKWRDGLDAWWQEGRDGLNRAVVMALVAILVIPYTFYKSWYTVPAWRGSFWRILSVLVVTNLASVKDLQRTYSAAKEGTSTILYRARRWIRKMMAFS 546
            T KHQKGK KR    RS++P  T D   P S+  SA S   +       + P       D  TY   S +S+  +                                                 +   KD   +P G  +      AP +HL+E IAGLFED EH+IGR+YTEAAL+HWR L    K ++LSG++REDVY+ LR+VEITTQFPVEGEPREET + VA+QFLHAMEV DGVF+FP AP+LEFVGFFA LE NLLMSMEE  ++N+AAMV  LLLWRQSWW+Y  +P++LLLLLEN WC   R+ +WE +   F  RRRWQPYVRWKVEAY VAALSI M+SQ   +W Y   +L +  V FLDY+SAS+ S   DS  LV  RQLLLHLQKFLLL LAY  Y+   ++   YFPT  +L+LSS+YFL G GI LFW++V  K++S FP+WRD LDAWWQ+GRDGLNRA+V+AL+A+ VIPYTFY SW T+PAWRG+FWR LSV+VVTNLASV+DL+RTY+A KE    ++YR +R +++  AFS
Sbjct:   52 TNKHQKGKHKR---HRSQSPIFTSDASTPFSTCASAPSSDRAKTFQDPSDYPHGGGSDSDVKTYADMSGSSKRGV---------------------------------TILPDSAADGISGGKDRAGAKDGKSFPQGRRSSIGQAPAPAIHLHECIAGLFEDGEHSIGRSYTEAALQHWRSLDTERKGQLLSGITREDVYECLRDVEITTQFPVEGEPREETGKAVAQQFLHAMEVQDGVFRFPSAPSLEFVGFFASLERNLLMSMEEENLRNQAAMVGCLLLWRQSWWMYAIIPVVLLLLLENAWCRKARSCLWELLSQSFLRRRRWQPYVRWKVEAYSVAALSIAMASQ--SKWCYKVTLLFIGLVLFLDYRSASSTSLYADSKALVTVRQLLLHLQKFLLLYLAYHSYVALFTVCLSYFPTFTVLLLSSVYFLAGLGISLFWQIVHDKLLSYFPRWRDSLDAWWQDGRDGLNRAMVLALIAVTVIPYTFYSSWNTIPAWRGTFWRFLSVMVVTNLASVEDLKRTYNAGKESARNVMYRMKRGLKRWSAFS 566
The following BLAST results are available for this feature:
BLAST of NO06G01800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26230.16.100e-14852.80hypothetical protein Naga_100025g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR028ncniR028Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000278NSK000278Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G01800.1NO06G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597153gene_6488Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100025g10gene4321Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G01800.1NO06G01800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G01800 ID=NO06G01800|Name=NO06G01800|organism=Nannochloropsis oceanica|type=gene|length=2021bp
ACAGGTACCATCAAGGATATATCGGGGCCGCCTTAGGTCCGGAGGGCCTG
CACCAAAAAAAAAAGTCTAACGCAAGACTTCATATTATCCAACCTAGGGT
CCAGCCTTCTTCAATTGAACCAGTTGCCCTTCTCACCGCCACTGCTACGG
CCATCCCTTTGGTTTCTGGCGTCCCTTACAATGACGAAGAAGCATCAAAA
GGGCAAGCAAAAGCGGCGGCTGTTCGAGCGGTCCGAGACGCCCACGGACG
ATGACGGCTTCCCCACTTCCTCGTCCTGCTCCGCGTCTTCCCCTGCCTTC
AGCTGTGAGGGGCCAGCTCCCCCCACGTGTGTAGACGACGCCTACACTTA
CGAGTCTCGCTCGGCCACTTCTCGCCACAGAATCGGCAGCAGCAGCGGTG
GTGGTGCTGGAAGTGGTGGTGTGGGCGGGGATGAAAGGCATGGTGGGAGT
AGTTGGAAAGTGGAGGCGAATGCGAACGCTAGTGGTCGAAGCGACAGCCA
GAGCAAGGATAGCAGCGGAAATAACGGCAGCCAATGCAGTGACAAGGACC
ACCCACATTGGCCGGCTGGTAACTCAGCGAAATGGGACACGCTTGCCGCG
CCCAAGATGCATCTATACGAGGGTATTGCGGGGTTGTTTGAGGATAATGA
GCATGCAATCGGAAGGACCTATACCGAGGCGGCCTTGGAGCACTGGCGGG
GGTTGACCGTAGCAAGCAAGGCGAAGATACTAAGTGGGGTATCAAGGGAG
GATGTGTACGATAGCTTGAGAGAGGTTGAGATCACGACGCAGTTTCCTGT
GGAGGGGGAGCCGAGGGAGGAAACTGCGCGAAAAGTGGCGGAGCAGTTTT
TGCATGCCATGGAGGTGACCGATGGGGTTTTCAAGTTCCCACATGCGCCA
ACGCTGGAGTTTGTAGGATTTTTTGCGTGTTTGGAGACGAATTTGCTGAT
GTCCATGGAGGAGAGTAAGATCAAGAATGAGGCCGCGATGGTGCTCTTTC
TTCTGTTGTGGCGGCAGTCGTGGTGGTTGTATGGTTTTGTCCCTCTTCTC
CTCCTGCTGTTGCTAGAAAACAAGTGGTGTACCACTATGCGTGCTTGGGT
ATGGGAGGGTATGTGGCACGGATTCTGTGGACGGAGACGGTGGCAGCCTT
ATGTAAGATGGAAGGTCGAGGCATACATGGTTGCTGCCCTCAGCATCGTC
ATGTCCTCTCAGGAGCGGAAGAGATGGTACTACCTTTCCGTCATTTTAAC
GGTCGCGGCAGTTTTTCTCGATTATCAGTCCGCCTCAACTCGATCGGGAA
TGGTCGACTCCACGACGTTAGTCAATACGAGGCAGCTTTTATTGCACCTG
CAGAAGTTCCTACTTCTCCTCCTCGCTTACCCAAGATATATCGACTTCCT
TTCCATAGGATTCTACTACTTCCCCACGGTTTTTATCCTCGTTCTGTCTA
GCATTTATTTCTTAGTTGGGTTCGGTATCCAATTATTCTGGCGACTGGTG
CGTGTCAAGGTCATGTCGAGATTCCCCAAATGGAGGGATGGGTTGGACGC
ATGGTGGCAAGAAGGGAGGGATGGCTTGAATCGCGCGGTGGTCATGGCCC
TGGTTGCCATCCTTGTTATCCCTTACACGTTTTATAAAAGCTGGTACACA
GTTCCGGCGTGGCGGGGATCATTTTGGCGGATTCTTAGTGTGCTGGTTGT
GACCAATTTAGCTTCTGTGAAGGACTTGCAACGCACGTACTCGGCAGCGA
AAGAAGGGACGAGTACTATTTTGTATCGTGCGAGGAGGTGGATCAGGAAA
ATGATGGCATTTTCAGACAAAGCGAGGAGGGAGAAGGCGGCGTCGGAAGC
GTAGGCCAAGGAAGCGTGGGATACGGAGTTTCGATTGGGAACTGAGTAAG
AAACGGTCGTAGGAGGAGAGGCAATAGAGGGGTTGTATGATAGTGAAGAG
ACATTTTCGCCAACAAATTGATCGCACGAAGAAGCAATTTGGAAACCAGC
TTTCGAGCGAAGGGAGGAACG
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protein sequence of NO06G01800.1

>NO06G01800.1-protein ID=NO06G01800.1-protein|Name=NO06G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MTKKHQKGKQKRRLFERSETPTDDDGFPTSSSCSASSPAFSCEGPAPPTC
VDDAYTYESRSATSRHRIGSSSGGGAGSGGVGGDERHGGSSWKVEANANA
SGRSDSQSKDSSGNNGSQCSDKDHPHWPAGNSAKWDTLAAPKMHLYEGIA
GLFEDNEHAIGRTYTEAALEHWRGLTVASKAKILSGVSREDVYDSLREVE
ITTQFPVEGEPREETARKVAEQFLHAMEVTDGVFKFPHAPTLEFVGFFAC
LETNLLMSMEESKIKNEAAMVLFLLLWRQSWWLYGFVPLLLLLLLENKWC
TTMRAWVWEGMWHGFCGRRRWQPYVRWKVEAYMVAALSIVMSSQERKRWY
YLSVILTVAAVFLDYQSASTRSGMVDSTTLVNTRQLLLHLQKFLLLLLAY
PRYIDFLSIGFYYFPTVFILVLSSIYFLVGFGIQLFWRLVRVKVMSRFPK
WRDGLDAWWQEGRDGLNRAVVMALVAILVIPYTFYKSWYTVPAWRGSFWR
ILSVLVVTNLASVKDLQRTYSAAKEGTSTILYRARRWIRKMMAFSDKARR
EKAASEA*
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Synonyms
Publications