NO06G01800.1, NO06G01800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO06G01800.1
Unique NameNO06G01800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2021
Alignment locationchr6:548591..550611 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:548591..550611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO06G01800.1 vs.
Match: EWM26230.1 (hypothetical protein Naga_100025g10 [Nannochloropsis gaditana])

HSP 1 Score: 535.8 bits (1379), Expect = 1.600e-148
Identity = 301/547 (55.03%), Postives = 373/547 (68.19%), Query Frame = 0 
Query:    2 TKKHQKGKQKRRLFERSETP--TDDDGFPTSSSCSASSPAFSCEGPAPPTCVDDAYTYESRSATSRHRIGSSSGGGAGSGGVGGDERHGGSSWKVEANANASGRSDSQSKDSSGNNGSQCSDKDHPHWPAGNSAKWDTLAAPKMHLYEGIAGLFEDNEHAIGRTYTEAALEHWRGLTVASKAKILSGVSREDVYDSLREVEITTQFPVEGEPREETARKVAEQFLHAMEVTDGVFKFPHAPTLEFVGFFACLETNLLMSMEESKIKNEAAMVLFLLLWRQSWWLYGFVPLLLLLLLENKWCTTMRAWVWEGMWHGFCGRRRWQPYVRWKVEAYMVAALSIVMSSQERKRWYYLSVILTVAAV-FLDYQSASTRSGMVDSTTLVNTRQLLLHLQKFLLLLLAYPRYIDFLSIGFYYFPTVFILVLSSIYFLVGFGIQLFWRLVRVKVMSRFPKWRDGLDAWWQEGRDGLNRAVVMALVAILVIPYTFYKSWYTVPAWRGSFWRILSVLVVTNLASVKDLQRTYSAAKEGTSTILYRARRWIRKMMAFS 546
            T KHQKGK KR    RS++P  T D   P S+  SA S              D A T++  S           GGG+ S      +  G S   V    +++    S  KD +G        KD   +P G  +      AP +HL+E IAGLFED EH+IGR+YTEAAL+HWR L    K ++LSG++REDVY+ LR+VEITTQFPVEGEPREET + VA+QFLHAMEV DGVF+FP AP+LEFVGFFA LE NLLMSMEE  ++N+AAMV  LLLWRQSWW+Y  +P++LLLLLEN WC   R+ +WE +   F  RRRWQPYVRWKVEAY VAALSI M+SQ   +W Y   +L +  V FLDY+SAS+ S   DS  LV  RQLLLHLQKFLLL LAY  Y+   ++   YFPT  +L+LSS+YFL G GI LFW++V  K++S FP+WRD LDAWWQ+GRDGLNRA+V+AL+A+ VIPYTFY SW T+PAWRG+FWR LSV+VVTNLASV+DL+RTY+A KE    ++YR +R +++  AFS
Sbjct:   52 TNKHQKGKHKRH---RSQSPIFTSDASTPFSTCASAPSS-------------DRAKTFQDPSDYPH-------GGGSDSDVKTYADMSGSSKRGVTILPDSAADGISGGKDRAGA-------KDGKSFPQGRRSSIGQAPAPAIHLHECIAGLFEDGEHSIGRSYTEAALQHWRSLDTERKGQLLSGITREDVYECLRDVEITTQFPVEGEPREETGKAVAQQFLHAMEVQDGVFRFPSAPSLEFVGFFASLERNLLMSMEEENLRNQAAMVGCLLLWRQSWWMYAIIPVVLLLLLENAWCRKARSCLWELLSQSFLRRRRWQPYVRWKVEAYSVAALSIAMASQ--SKWCYKVTLLFIGLVLFLDYRSASSTSLYADSKALVTVRQLLLHLQKFLLLYLAYHSYVALFTVCLSYFPTFTVLLLSSVYFLAGLGISLFWQIVHDKLLSYFPRWRDSLDAWWQDGRDGLNRAMVLALIAVTVIPYTFYSSWNTIPAWRGTFWRFLSVMVVTNLASVEDLKRTYNAGKESARNVMYRMKRGLKRWSAFS 566
The following BLAST results are available for this feature:
BLAST of NO06G01800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26230.11.600e-14855.03hypothetical protein Naga_100025g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO06G01800NO06G01800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO06G01800.1NO06G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO06G01800.1.cds1NO06G01800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO06G01800.1 ID=NO06G01800.1|Name=NO06G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2021bp
ACAGGTACCATCAAGGATATATCGGGGCCGCCTTAGGTCCGGAGGGCCTG
CACCAAAAAAAAAAGTCTAACGCAAGACTTCATATTATCCAACCTAGGGT
CCAGCCTTCTTCAATTGAACCAGTTGCCCTTCTCACCGCCACTGCTACGG
CCATCCCTTTGGTTTCTGGCGTCCCTTACAATGACGAAGAAGCATCAAAA
GGGCAAGCAAAAGCGGCGGCTGTTCGAGCGGTCCGAGACGCCCACGGACG
ATGACGGCTTCCCCACTTCCTCGTCCTGCTCCGCGTCTTCCCCTGCCTTC
AGCTGTGAGGGGCCAGCTCCCCCCACGTGTGTAGACGACGCCTACACTTA
CGAGTCTCGCTCGGCCACTTCTCGCCACAGAATCGGCAGCAGCAGCGGTG
GTGGTGCTGGAAGTGGTGGTGTGGGCGGGGATGAAAGGCATGGTGGGAGT
AGTTGGAAAGTGGAGGCGAATGCGAACGCTAGTGGTCGAAGCGACAGCCA
GAGCAAGGATAGCAGCGGAAATAACGGCAGCCAATGCAGTGACAAGGACC
ACCCACATTGGCCGGCTGGTAACTCAGCGAAATGGGACACGCTTGCCGCG
CCCAAGATGCATCTATACGAGGGTATTGCGGGGTTGTTTGAGGATAATGA
GCATGCAATCGGAAGGACCTATACCGAGGCGGCCTTGGAGCACTGGCGGG
GGTTGACCGTAGCAAGCAAGGCGAAGATACTAAGTGGGGTATCAAGGGAG
GATGTGTACGATAGCTTGAGAGAGGTTGAGATCACGACGCAGTTTCCTGT
GGAGGGGGAGCCGAGGGAGGAAACTGCGCGAAAAGTGGCGGAGCAGTTTT
TGCATGCCATGGAGGTGACCGATGGGGTTTTCAAGTTCCCACATGCGCCA
ACGCTGGAGTTTGTAGGATTTTTTGCGTGTTTGGAGACGAATTTGCTGAT
GTCCATGGAGGAGAGTAAGATCAAGAATGAGGCCGCGATGGTGCTCTTTC
TTCTGTTGTGGCGGCAGTCGTGGTGGTTGTATGGTTTTGTCCCTCTTCTC
CTCCTGCTGTTGCTAGAAAACAAGTGGTGTACCACTATGCGTGCTTGGGT
ATGGGAGGGTATGTGGCACGGATTCTGTGGACGGAGACGGTGGCAGCCTT
ATGTAAGATGGAAGGTCGAGGCATACATGGTTGCTGCCCTCAGCATCGTC
ATGTCCTCTCAGGAGCGGAAGAGATGGTACTACCTTTCCGTCATTTTAAC
GGTCGCGGCAGTTTTTCTCGATTATCAGTCCGCCTCAACTCGATCGGGAA
TGGTCGACTCCACGACGTTAGTCAATACGAGGCAGCTTTTATTGCACCTG
CAGAAGTTCCTACTTCTCCTCCTCGCTTACCCAAGATATATCGACTTCCT
TTCCATAGGATTCTACTACTTCCCCACGGTTTTTATCCTCGTTCTGTCTA
GCATTTATTTCTTAGTTGGGTTCGGTATCCAATTATTCTGGCGACTGGTG
CGTGTCAAGGTCATGTCGAGATTCCCCAAATGGAGGGATGGGTTGGACGC
ATGGTGGCAAGAAGGGAGGGATGGCTTGAATCGCGCGGTGGTCATGGCCC
TGGTTGCCATCCTTGTTATCCCTTACACGTTTTATAAAAGCTGGTACACA
GTTCCGGCGTGGCGGGGATCATTTTGGCGGATTCTTAGTGTGCTGGTTGT
GACCAATTTAGCTTCTGTGAAGGACTTGCAACGCACGTACTCGGCAGCGA
AAGAAGGGACGAGTACTATTTTGTATCGTGCGAGGAGGTGGATCAGGAAA
ATGATGGCATTTTCAGACAAAGCGAGGAGGGAGAAGGCGGCGTCGGAAGC
GTAGGCCAAGGAAGCGTGGGATACGGAGTTTCGATTGGGAACTGAGTAAG
AAACGGTCGTAGGAGGAGAGGCAATAGAGGGGTTGTATGATAGTGAAGAG
ACATTTTCGCCAACAAATTGATCGCACGAAGAAGCAATTTGGAAACCAGC
TTTCGAGCGAAGGGAGGAACG
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protein sequence of NO06G01800.1

>NO06G01800.1-protein ID=NO06G01800.1-protein|Name=NO06G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MTKKHQKGKQKRRLFERSETPTDDDGFPTSSSCSASSPAFSCEGPAPPTC
VDDAYTYESRSATSRHRIGSSSGGGAGSGGVGGDERHGGSSWKVEANANA
SGRSDSQSKDSSGNNGSQCSDKDHPHWPAGNSAKWDTLAAPKMHLYEGIA
GLFEDNEHAIGRTYTEAALEHWRGLTVASKAKILSGVSREDVYDSLREVE
ITTQFPVEGEPREETARKVAEQFLHAMEVTDGVFKFPHAPTLEFVGFFAC
LETNLLMSMEESKIKNEAAMVLFLLLWRQSWWLYGFVPLLLLLLLENKWC
TTMRAWVWEGMWHGFCGRRRWQPYVRWKVEAYMVAALSIVMSSQERKRWY
YLSVILTVAAVFLDYQSASTRSGMVDSTTLVNTRQLLLHLQKFLLLLLAY
PRYIDFLSIGFYYFPTVFILVLSSIYFLVGFGIQLFWRLVRVKVMSRFPK
WRDGLDAWWQEGRDGLNRAVVMALVAILVIPYTFYKSWYTVPAWRGSFWR
ILSVLVVTNLASVKDLQRTYSAAKEGTSTILYRARRWIRKMMAFSDKARR
EKAASEA*
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mRNA from alignment at chr6:548591..550611+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO06G01800.1 ID=NO06G01800.1|Name=NO06G01800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2021bp|location=Sequence derived from alignment at chr6:548591..550611+ (Nannochloropsis oceanica)
ACAGGTACCATCAAGGATATATCGGGGCCGCCTTAGGTCCGGAGGGCCTG
CACCAAAAAAAAAAGTCTAACGCAAGACTTCATATTATCCAACCTAGGGT
CCAGCCTTCTTCAATTGAACCAGTTGCCCTTCTCACCGCCACTGCTACGG
CCATCCCTTTGGTTTCTGGCGTCCCTTACAATGACGAAGAAGCATCAAAA
GGGCAAGCAAAAGCGGCGGCTGTTCGAGCGGTCCGAGACGCCCACGGACG
ATGACGGCTTCCCCACTTCCTCGTCCTGCTCCGCGTCTTCCCCTGCCTTC
AGCTGTGAGGGGCCAGCTCCCCCCACGTGTGTAGACGACGCCTACACTTA
CGAGTCTCGCTCGGCCACTTCTCGCCACAGAATCGGCAGCAGCAGCGGTG
GTGGTGCTGGAAGTGGTGGTGTGGGCGGGGATGAAAGGCATGGTGGGAGT
AGTTGGAAAGTGGAGGCGAATGCGAACGCTAGTGGTCGAAGCGACAGCCA
GAGCAAGGATAGCAGCGGAAATAACGGCAGCCAATGCAGTGACAAGGACC
ACCCACATTGGCCGGCTGGTAACTCAGCGAAATGGGACACGCTTGCCGCG
CCCAAGATGCATCTATACGAGGGTATTGCGGGGTTGTTTGAGGATAATGA
GCATGCAATCGGAAGGACCTATACCGAGGCGGCCTTGGAGCACTGGCGGG
GGTTGACCGTAGCAAGCAAGGCGAAGATACTAAGTGGGGTATCAAGGGAG
GATGTGTACGATAGCTTGAGAGAGGTTGAGATCACGACGCAGTTTCCTGT
GGAGGGGGAGCCGAGGGAGGAAACTGCGCGAAAAGTGGCGGAGCAGTTTT
TGCATGCCATGGAGGTGACCGATGGGGTTTTCAAGTTCCCACATGCGCCA
ACGCTGGAGTTTGTAGGATTTTTTGCGTGTTTGGAGACGAATTTGCTGAT
GTCCATGGAGGAGAGTAAGATCAAGAATGAGGCCGCGATGGTGCTCTTTC
TTCTGTTGTGGCGGCAGTCGTGGTGGTTGTATGGTTTTGTCCCTCTTCTC
CTCCTGCTGTTGCTAGAAAACAAGTGGTGTACCACTATGCGTGCTTGGGT
ATGGGAGGGTATGTGGCACGGATTCTGTGGACGGAGACGGTGGCAGCCTT
ATGTAAGATGGAAGGTCGAGGCATACATGGTTGCTGCCCTCAGCATCGTC
ATGTCCTCTCAGGAGCGGAAGAGATGGTACTACCTTTCCGTCATTTTAAC
GGTCGCGGCAGTTTTTCTCGATTATCAGTCCGCCTCAACTCGATCGGGAA
TGGTCGACTCCACGACGTTAGTCAATACGAGGCAGCTTTTATTGCACCTG
CAGAAGTTCCTACTTCTCCTCCTCGCTTACCCAAGATATATCGACTTCCT
TTCCATAGGATTCTACTACTTCCCCACGGTTTTTATCCTCGTTCTGTCTA
GCATTTATTTCTTAGTTGGGTTCGGTATCCAATTATTCTGGCGACTGGTG
CGTGTCAAGGTCATGTCGAGATTCCCCAAATGGAGGGATGGGTTGGACGC
ATGGTGGCAAGAAGGGAGGGATGGCTTGAATCGCGCGGTGGTCATGGCCC
TGGTTGCCATCCTTGTTATCCCTTACACGTTTTATAAAAGCTGGTACACA
GTTCCGGCGTGGCGGGGATCATTTTGGCGGATTCTTAGTGTGCTGGTTGT
GACCAATTTAGCTTCTGTGAAGGACTTGCAACGCACGTACTCGGCAGCGA
AAGAAGGGACGAGTACTATTTTGTATCGTGCGAGGAGGTGGATCAGGAAA
ATGATGGCATTTTCAGACAAAGCGAGGAGGGAGAAGGCGGCGTCGGAAGC
GTAGGCCAAGGAAGCGTGGGATACGGAGTTTCGATTGGGAACTGAGTAAG
AAACGGTCGTAGGAGGAGAGGCAATAGAGGGGTTGTATGATAGTGAAGAG
ACATTTTCGCCAACAAATTGATCGCACGAAGAAGCAATTTGGAAACCAGC
TTTCGAGCGAAGGGAGGAACG
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Coding sequence (CDS) from alignment at chr6:548591..550611+

>NO06G01800.1 ID=NO06G01800.1|Name=NO06G01800.1|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at chr6:548591..550611+ (Nannochloropsis oceanica)
ATGACGAAGAAGCATCAAAAGGGCAAGCAAAAGCGGCGGCTGTTCGAGCG
GTCCGAGACGCCCACGGACGATGACGGCTTCCCCACTTCCTCGTCCTGCT
CCGCGTCTTCCCCTGCCTTCAGCTGTGAGGGGCCAGCTCCCCCCACGTGT
GTAGACGACGCCTACACTTACGAGTCTCGCTCGGCCACTTCTCGCCACAG
AATCGGCAGCAGCAGCGGTGGTGGTGCTGGAAGTGGTGGTGTGGGCGGGG
ATGAAAGGCATGGTGGGAGTAGTTGGAAAGTGGAGGCGAATGCGAACGCT
AGTGGTCGAAGCGACAGCCAGAGCAAGGATAGCAGCGGAAATAACGGCAG
CCAATGCAGTGACAAGGACCACCCACATTGGCCGGCTGGTAACTCAGCGA
AATGGGACACGCTTGCCGCGCCCAAGATGCATCTATACGAGGGTATTGCG
GGGTTGTTTGAGGATAATGAGCATGCAATCGGAAGGACCTATACCGAGGC
GGCCTTGGAGCACTGGCGGGGGTTGACCGTAGCAAGCAAGGCGAAGATAC
TAAGTGGGGTATCAAGGGAGGATGTGTACGATAGCTTGAGAGAGGTTGAG
ATCACGACGCAGTTTCCTGTGGAGGGGGAGCCGAGGGAGGAAACTGCGCG
AAAAGTGGCGGAGCAGTTTTTGCATGCCATGGAGGTGACCGATGGGGTTT
TCAAGTTCCCACATGCGCCAACGCTGGAGTTTGTAGGATTTTTTGCGTGT
TTGGAGACGAATTTGCTGATGTCCATGGAGGAGAGTAAGATCAAGAATGA
GGCCGCGATGGTGCTCTTTCTTCTGTTGTGGCGGCAGTCGTGGTGGTTGT
ATGGTTTTGTCCCTCTTCTCCTCCTGCTGTTGCTAGAAAACAAGTGGTGT
ACCACTATGCGTGCTTGGGTATGGGAGGGTATGTGGCACGGATTCTGTGG
ACGGAGACGGTGGCAGCCTTATGTAAGATGGAAGGTCGAGGCATACATGG
TTGCTGCCCTCAGCATCGTCATGTCCTCTCAGGAGCGGAAGAGATGGTAC
TACCTTTCCGTCATTTTAACGGTCGCGGCAGTTTTTCTCGATTATCAGTC
CGCCTCAACTCGATCGGGAATGGTCGACTCCACGACGTTAGTCAATACGA
GGCAGCTTTTATTGCACCTGCAGAAGTTCCTACTTCTCCTCCTCGCTTAC
CCAAGATATATCGACTTCCTTTCCATAGGATTCTACTACTTCCCCACGGT
TTTTATCCTCGTTCTGTCTAGCATTTATTTCTTAGTTGGGTTCGGTATCC
AATTATTCTGGCGACTGGTGCGTGTCAAGGTCATGTCGAGATTCCCCAAA
TGGAGGGATGGGTTGGACGCATGGTGGCAAGAAGGGAGGGATGGCTTGAA
TCGCGCGGTGGTCATGGCCCTGGTTGCCATCCTTGTTATCCCTTACACGT
TTTATAAAAGCTGGTACACAGTTCCGGCGTGGCGGGGATCATTTTGGCGG
ATTCTTAGTGTGCTGGTTGTGACCAATTTAGCTTCTGTGAAGGACTTGCA
ACGCACGTACTCGGCAGCGAAAGAAGGGACGAGTACTATTTTGTATCGTG
CGAGGAGGTGGATCAGGAAAATGATGGCATTTTCAGACAAAGCGAGGAGG
GAGAAGGCGGCGTCGGAAGCGTAG
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Synonyms
Publications