NO05G00780, NO05G00780 (gene) Nannochloropsis oceanica

Overview
NameNO05G00780
Unique NameNO05G00780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1341
Alignment locationchr5:251206..252546 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:251206..252546 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G00780 vs. NCBI_GenBank
Match: EWM28146.1 (hypothetical protein Naga_100004g5 [Nannochloropsis gaditana])

HSP 1 Score: 329.7 bits (844), Expect = 1.400e-86
Identity = 210/368 (57.07%), Postives = 232/368 (63.04%), Query Frame = 0 
Query:   22 VELHAEAVKRHVERHWDRFKDRPDPRAWLTELREMCETDSEREDEDEFVDVMALEKRCCCLWCHAEKGLEDEFCWNARCPASPLFSETAALVMPGGGAPPGPPSLPVPVAWMQSAAGVRKIIKRKRTLKAEAVHLPYPPAVAASMKADPLSSASXXXXXXXXXXXXXXXXXXXXXXGLDHGRFSEGRKVFPECGFLAHAPVNPQDHVLFNTHAYVKFLDGKAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLFSLDPALYRWQVAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVESVMNVPVGPSSGGSLAAIRAGW 390
            VELHAEA+KRHVERHW+RFKDRPDPR+WL E+ ++C+TDSEREDE+E+ DV+ALE RCCCLWCHAEK LED +CWN  CPASPLFSE AAL MPGGGA P PPSLPVP  WM SAAGV+KIIKRKR +  E   LPY PA AA++KA PL  A                       G DH RF+EG+KV P CGFLAHAPV+PQ HVLFNTHAYVKFL+GKA+                                            FSLDPALYRWQVAE   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                             ALV S + +P GPS GGSLAAIRA W
Sbjct:  169 VELHAEAIKRHVERHWERFKDRPDPRSWLEEMHDVCDTDSEREDEEEYRDVLALESRCCCLWCHAEKALEDTYCWNVACPASPLFSERAALPMPGGGASPAPPSLPVPAHWMSSAAGVQKIIKRKRAVAEEEALLPYTPAEAAALKAHPLGHA----HSPPAYASIGERRRVKRLKGSDHSRFAEGKKVMPACGFLAHAPVHPQGHVLFNTHAYVKFLEGKAIPTGEGRKRMGEGEELGARRGGGRGERRGCRAS------------FSLDPALYRWQVAEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYVEEQQRIRSAMVVEAAALAPREATAAAALVGSGICMPGGPSVGGSLAAIRAVW 520
The following BLAST results are available for this feature:
BLAST of NO05G00780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28146.11.400e-8657.07hypothetical protein Naga_100004g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00780.1NO05G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00780.1NO05G00780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00780 ID=NO05G00780|Name=NO05G00780|organism=Nannochloropsis oceanica|type=gene|length=1341bp
ATGGATGGTCTGGCCCTGCTGGCTGGGAGCTCGACGACGGCGGCACGGGT
GCCGTTGCGGCAGGTGGAACTGCATGCAGAAGCGGTGAAAAGGCATGTGG
AGCGGCACTGGGATAGGTTCAAGGACCGGCCTGACCCGAGGGCATGGCTC
ACGGAGCTGAGGGAGATGTGCGAGACTGACTCGGAGAGGGAGGACGAGGA
TGAATTCGTGGATGTCATGGCCTTAGAAAAACGGTGTTGTTGCCTATGGT
GCCACGCCGAAAAAGGCTTGGAGGATGAGTTTTGTTGGAATGCCCGCTGT
CCTGCTTCCCCTCTCTTCAGCGAAACGGCCGCCTTGGTGATGCCGGGTGG
TGGCGCTCCCCCGGGCCCTCCTTCCCTACCTGTCCCCGTGGCATGGATGC
AGTCTGCGGCGGGTGTGCGGAAGATAATCAAACGAAAACGGACCCTTAAA
GCGGAAGCGGTCCATCTTCCCTACCCTCCCGCCGTGGCTGCTTCCATGAA
AGCTGACCCGCTTTCCTCCGCCTCCTTCTCCTCCGCCACCGCCTCCACAT
CCTCCTCGATAAGAGAGCTGCGACGAGTGAAGAAGCTGAAGGGGTTGGAT
CATGGGCGCTTTTCGGAGGGAAGGAAGGTTTTCCCCGAATGCGGCTTCTT
GGCCCATGCGCCCGTTAACCCTCAAGACCATGTCTTGTTCAACACGCACG
CCTATGTCAAATTCTTGGACGGCAAGGCTGTGGCCCTGGCAGCAGCAGCA
GCAGCAGCAGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCGGCGGCGAC
GGACAGGGAAAGGGGTCAGGAGATGCACGAGCGGGGCCAGGGAGGGGGAA
AGGGGAACTTGTTGTTTTCTCTGGACCCGGCCTTATACCGGTGGCAGGTG
GCCGAAGCCATGCGGAAGGAGAAGGAGGCACAAGAAGCAGCGGCAAAGGC
AGCAGCAGCGGCCGCTGAAGCGGCGGCGGCGGCAGCGGCGGAAGCACGGG
CACGGTATGTTGAGCAGCAGCAACAGATTCGGTCTGCGATGGTGGTGGAG
GCGGCGGCGCTGGCGCCAAGGGAGGCAACAGCAGCGGCAGCACTGGTCGA
GTCAGTGATGAATGTCCCCGTTGGTCCCTCCTCAGGGGGGTCGCTGGCGG
CCATCAGGGCGGGTTGGGTGGGTGAGGGGGAGAAGGAGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGG
AGGAGGAGGAGGAGGAGGTGGAGGAGGGGCAGGGGGTTTGA
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protein sequence of NO05G00780.1

>NO05G00780.1-protein ID=NO05G00780.1-protein|Name=NO05G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MDGLALLAGSSTTAARVPLRQVELHAEAVKRHVERHWDRFKDRPDPRAWL
TELREMCETDSEREDEDEFVDVMALEKRCCCLWCHAEKGLEDEFCWNARC
PASPLFSETAALVMPGGGAPPGPPSLPVPVAWMQSAAGVRKIIKRKRTLK
AEAVHLPYPPAVAASMKADPLSSASFSSATASTSSSIRELRRVKKLKGLD
HGRFSEGRKVFPECGFLAHAPVNPQDHVLFNTHAYVKFLDGKAVALAAAA
AAAAAAAAAAAAAAAATDRERGQEMHERGQGGGKGNLLFSLDPALYRWQV
AEAMRKEKEAQEAAAKAAAAAAEAAAAAAAEARARYVEQQQQIRSAMVVE
AAALAPREATAAAALVESVMNVPVGPSSGGSLAAIRAGWVGEGEKEGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEEEEEEEVEEGQGV*
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Synonyms
Publications