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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:251206..252546 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G00780.1 vs.
Match: EWM28146.1 (hypothetical protein Naga_100004g5 [Nannochloropsis gaditana]) HSP 1 Score: 434.9 bits (1117), Expect = 3.100e-118 Identity = 259/395 (65.57%), Postives = 293/395 (74.18%), Query Frame = 0
Query: 22 VELHAEAVKRHVERHWDRFKDRPDPRAWLTELREMCETDSEREDEDEFVDVMALEKRCCCLWCHAEKGLEDEFCWNARCPASPLFSETAALVMPGGGAPPGPPSLPVPVAWMQSAAGVRKIIKRKRTLKAEAVHLPYPPAVAASMKADPLSSASFSSATASTSSSIRELRRVKKLKGLDHGRFSEGRKVFPECGFLAHAPVNPQDHVLFNTHAYVKFLDGKAVALAAAAAAAAAAAAAAAAAAAATDRERGQEMHERG--QGGGKG-----NLLFSLDPALYRWQVAEAMRKEKEAQEAAAKAAAAAAEAAAAAAAEARARYVEQQQQIRSAMVVEAAALAPREATAAAALVESVMNVPVGPSSGGSLAAIRAGWVG-----EGEKEGGGGGGGG 405
VELHAEA+KRHVERHW+RFKDRPDPR+WL E+ ++C+TDSEREDE+E+ DV+ALE RCCCLWCHAEK LED +CWN CPASPLFSE AAL MPGGGA P PPSLPVP WM SAAGV+KIIKRKR + E LPY PA AA++KA PL A A A SI E RRVK+LKG DH RF+EG+KV P CGFLAHAPV+PQ HVLFNTHAYVKFL+GKA+ R+R E E G +GGG+G FSLDPALYRWQVAEA R+E+EAQEAAAKAA AAA+AAA+AAAEARA YVE+QQ+IRSAMVVEAAALAPREATAAAALV S + +P GPS GGSLAAIRA W +GEK+ GG G
Sbjct: 169 VELHAEAIKRHVERHWERFKDRPDPRSWLEEMHDVCDTDSEREDEEEYRDVLALESRCCCLWCHAEKALEDTYCWNVACPASPLFSERAALPMPGGGASPAPPSLPVPAHWMSSAAGVQKIIKRKRAVAEEEALLPYTPAEAAALKAHPLGHAHSPPAYA----SIGERRRVKRLKGSDHSRFAEGKKVMPACGFLAHAPVHPQGHVLFNTHAYVKFLEGKAI-------------------PTGEGRKRMGEGEELGARRGGGRGERRGCRASFSLDPALYRWQVAEAARQEQEAQEAAAKAAEAAAKAAASAAAEARALYVEEQQRIRSAMVVEAAALAPREATAAAALVGSGICMPGGPSVGGSLAAIRAVWTNVDNGEKGEKDKGGKARNG 540
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G00780.1 ID=NO05G00780.1|Name=NO05G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp ATGGATGGTCTGGCCCTGCTGGCTGGGAGCTCGACGACGGCGGCACGGGT GCCGTTGCGGCAGGTGGAACTGCATGCAGAAGCGGTGAAAAGGCATGTGG AGCGGCACTGGGATAGGTTCAAGGACCGGCCTGACCCGAGGGCATGGCTC ACGGAGCTGAGGGAGATGTGCGAGACTGACTCGGAGAGGGAGGACGAGGA TGAATTCGTGGATGTCATGGCCTTAGAAAAACGGTGTTGTTGCCTATGGT GCCACGCCGAAAAAGGCTTGGAGGATGAGTTTTGTTGGAATGCCCGCTGT CCTGCTTCCCCTCTCTTCAGCGAAACGGCCGCCTTGGTGATGCCGGGTGG TGGCGCTCCCCCGGGCCCTCCTTCCCTACCTGTCCCCGTGGCATGGATGC AGTCTGCGGCGGGTGTGCGGAAGATAATCAAACGAAAACGGACCCTTAAA GCGGAAGCGGTCCATCTTCCCTACCCTCCCGCCGTGGCTGCTTCCATGAA AGCTGACCCGCTTTCCTCCGCCTCCTTCTCCTCCGCCACCGCCTCCACAT CCTCCTCGATAAGAGAGCTGCGACGAGTGAAGAAGCTGAAGGGGTTGGAT CATGGGCGCTTTTCGGAGGGAAGGAAGGTTTTCCCCGAATGCGGCTTCTT GGCCCATGCGCCCGTTAACCCTCAAGACCATGTCTTGTTCAACACGCACG CCTATGTCAAATTCTTGGACGGCAAGGCTGTGGCCCTGGCAGCAGCAGCA GCAGCAGCAGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCGGCGGCGAC GGACAGGGAAAGGGGTCAGGAGATGCACGAGCGGGGCCAGGGAGGGGGAA AGGGGAACTTGTTGTTTTCTCTGGACCCGGCCTTATACCGGTGGCAGGTG GCCGAAGCCATGCGGAAGGAGAAGGAGGCACAAGAAGCAGCGGCAAAGGC AGCAGCAGCGGCCGCTGAAGCGGCGGCGGCGGCAGCGGCGGAAGCACGGG CACGGTATGTTGAGCAGCAGCAACAGATTCGGTCTGCGATGGTGGTGGAG GCGGCGGCGCTGGCGCCAAGGGAGGCAACAGCAGCGGCAGCACTGGTCGA GTCAGTGATGAATGTCCCCGTTGGTCCCTCCTCAGGGGGGTCGCTGGCGG CCATCAGGGCGGGTTGGGTGGGTGAGGGGGAGAAGGAGGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGG AGGAGGAGGAGGAGGAGGTGGAGGAGGGGCAGGGGGTTTGA back to topprotein sequence of NO05G00780.1 >NO05G00780.1-protein ID=NO05G00780.1-protein|Name=NO05G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp MDGLALLAGSSTTAARVPLRQVELHAEAVKRHVERHWDRFKDRPDPRAWL TELREMCETDSEREDEDEFVDVMALEKRCCCLWCHAEKGLEDEFCWNARC PASPLFSETAALVMPGGGAPPGPPSLPVPVAWMQSAAGVRKIIKRKRTLK AEAVHLPYPPAVAASMKADPLSSASFSSATASTSSSIRELRRVKKLKGLD HGRFSEGRKVFPECGFLAHAPVNPQDHVLFNTHAYVKFLDGKAVALAAAA AAAAAAAAAAAAAAAATDRERGQEMHERGQGGGKGNLLFSLDPALYRWQV AEAMRKEKEAQEAAAKAAAAAAEAAAAAAAEARARYVEQQQQIRSAMVVE AAALAPREATAAAALVESVMNVPVGPSSGGSLAAIRAGWVGEGEKEGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGEEEEEEEVEEGQGV* back to topmRNA from alignment at chr5:251206..252546+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G00780.1 ID=NO05G00780.1|Name=NO05G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp|location=Sequence derived from alignment at chr5:251206..252546+ (Nannochloropsis oceanica) ATGGATGGTCTGGCCCTGCTGGCTGGGAGCTCGACGACGGCGGCACGGGT
GCCGTTGCGGCAGGTGGAACTGCATGCAGAAGCGGTGAAAAGGCATGTGG
AGCGGCACTGGGATAGGTTCAAGGACCGGCCTGACCCGAGGGCATGGCTC
ACGGAGCTGAGGGAGATGTGCGAGACTGACTCGGAGAGGGAGGACGAGGA
TGAATTCGTGGATGTCATGGCCTTAGAAAAACGGTGTTGTTGCCTATGGT
GCCACGCCGAAAAAGGCTTGGAGGATGAGTTTTGTTGGAATGCCCGCTGT
CCTGCTTCCCCTCTCTTCAGCGAAACGGCCGCCTTGGTGATGCCGGGTGG
TGGCGCTCCCCCGGGCCCTCCTTCCCTACCTGTCCCCGTGGCATGGATGC
AGTCTGCGGCGGGTGTGCGGAAGATAATCAAACGAAAACGGACCCTTAAA
GCGGAAGCGGTCCATCTTCCCTACCCTCCCGCCGTGGCTGCTTCCATGAA
AGCTGACCCGCTTTCCTCCGCCTCCTTCTCCTCCGCCACCGCCTCCACAT
CCTCCTCGATAAGAGAGCTGCGACGAGTGAAGAAGCTGAAGGGGTTGGAT
CATGGGCGCTTTTCGGAGGGAAGGAAGGTTTTCCCCGAATGCGGCTTCTT
GGCCCATGCGCCCGTTAACCCTCAAGACCATGTCTTGTTCAACACGCACG
CCTATGTCAAATTCTTGGACGGCAAGGCTGTGGCCCTGGCAGCAGCAGCA
GCAGCAGCAGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCGGCGGCGAC
GGACAGGGAAAGGGGTCAGGAGATGCACGAGCGGGGCCAGGGAGGGGGAA
AGGGGAACTTGTTGTTTTCTCTGGACCCGGCCTTATACCGGTGGCAGGTG
GCCGAAGCCATGCGGAAGGAGAAGGAGGCACAAGAAGCAGCGGCAAAGGC
AGCAGCAGCGGCCGCTGAAGCGGCGGCGGCGGCAGCGGCGGAAGCACGGG
CACGGTATGTTGAGCAGCAGCAACAGATTCGGTCTGCGATGGTGGTGGAG
GCGGCGGCGCTGGCGCCAAGGGAGGCAACAGCAGCGGCAGCACTGGTCGA
GTCAGTGATGAATGTCCCCGTTGGTCCCTCCTCAGGGGGGTCGCTGGCGG
CCATCAGGGCGGGTTGGGTGGGTGAGGGGGAGAAGGAGGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGG
AGGAGGAGGAGGAGGAGGTGGAGGAGGGGCAGGGGGTTTGA back to topCoding sequence (CDS) from alignment at chr5:251206..252546+ >NO05G00780.1 ID=NO05G00780.1|Name=NO05G00780.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr5:251206..252546+ (Nannochloropsis oceanica) ATGGATGGTCTGGCCCTGCTGGCTGGGAGCTCGACGACGGCGGCACGGGT GCCGTTGCGGCAGGTGGAACTGCATGCAGAAGCGGTGAAAAGGCATGTGG AGCGGCACTGGGATAGGTTCAAGGACCGGCCTGACCCGAGGGCATGGCTC ACGGAGCTGAGGGAGATGTGCGAGACTGACTCGGAGAGGGAGGACGAGGA TGAATTCGTGGATGTCATGGCCTTAGAAAAACGGTGTTGTTGCCTATGGT GCCACGCCGAAAAAGGCTTGGAGGATGAGTTTTGTTGGAATGCCCGCTGT CCTGCTTCCCCTCTCTTCAGCGAAACGGCCGCCTTGGTGATGCCGGGTGG TGGCGCTCCCCCGGGCCCTCCTTCCCTACCTGTCCCCGTGGCATGGATGC AGTCTGCGGCGGGTGTGCGGAAGATAATCAAACGAAAACGGACCCTTAAA GCGGAAGCGGTCCATCTTCCCTACCCTCCCGCCGTGGCTGCTTCCATGAA AGCTGACCCGCTTTCCTCCGCCTCCTTCTCCTCCGCCACCGCCTCCACAT CCTCCTCGATAAGAGAGCTGCGACGAGTGAAGAAGCTGAAGGGGTTGGAT CATGGGCGCTTTTCGGAGGGAAGGAAGGTTTTCCCCGAATGCGGCTTCTT GGCCCATGCGCCCGTTAACCCTCAAGACCATGTCTTGTTCAACACGCACG CCTATGTCAAATTCTTGGACGGCAAGGCTGTGGCCCTGGCAGCAGCAGCA GCAGCAGCAGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCGGCGGCGAC GGACAGGGAAAGGGGTCAGGAGATGCACGAGCGGGGCCAGGGAGGGGGAA AGGGGAACTTGTTGTTTTCTCTGGACCCGGCCTTATACCGGTGGCAGGTG GCCGAAGCCATGCGGAAGGAGAAGGAGGCACAAGAAGCAGCGGCAAAGGC AGCAGCAGCGGCCGCTGAAGCGGCGGCGGCGGCAGCGGCGGAAGCACGGG CACGGTATGTTGAGCAGCAGCAACAGATTCGGTCTGCGATGGTGGTGGAG GCGGCGGCGCTGGCGCCAAGGGAGGCAACAGCAGCGGCAGCACTGGTCGA GTCAGTGATGAATGTCCCCGTTGGTCCCTCCTCAGGGGGGTCGCTGGCGG CCATCAGGGCGGGTTGGGTGGGTGAGGGGGAGAAGGAGGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGG AGGAGGAGGAGGAGGAGGTGGAGGAGGGGCAGGGGGTTTGA back to top
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