NO05G00500, NO05G00500 (gene) Nannochloropsis oceanica

Overview
NameNO05G00500
Unique NameNO05G00500
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1756
Alignment locationchr5:178548..180303 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:178548..180303 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G00500 vs. NCBI_GenBank
Match: EWM28328.1 (hypothetical protein Naga_100109g20 [Nannochloropsis gaditana])

HSP 1 Score: 135.2 bits (339), Expect = 2.900e-28
Identity = 113/226 (50.00%), Postives = 131/226 (57.96%), Query Frame = 0 
Query:   33 KKKKLKGKLFTLTTGPLPQPKFKAIVAAIYARKQAEAEELRVKIMANARHAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTIEASAATGALPRVLETGLEALRDFDENGR---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMPAGLGGRKRQKTMADVVQLHRDLSDLQRTRTELRWLLGQVERLEYESL 256
            KKKK+KGKLFTLTT PLP+ KFKAIVAA+YARKQAEAEELR +I+ NA+ AE                                               T ALP+VLE+G +AL+ +DE+GR                              XXXXXXXXXXXXXXXXXXXX     +  G  GRKR++TMAD+VQLHRDL++LQRTRTELRWLL QVERLEYESL
Sbjct:   25 KKKKIKGKLFTLTTSPLPKAKFKAIVAAVYARKQAEAEELRTQIIHNAKLAEEEAFSRHGLDSCNQAGG--------------------------CGDETQALPKVLESGFDALKAYDEHGRRIAPKALTTVPSLMLGSGRWREREGKVAAGXXXXXXXXXXXXXXXXXXXXQDTLAVSQGGKGRKREQTMADLVQLHRDLAELQRTRTELRWLLEQVERLEYESL 224
The following BLAST results are available for this feature:
BLAST of NO05G00500 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28328.12.900e-2850.00hypothetical protein Naga_100109g20 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL087nonsL087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL086nonsL086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR119ngnoR119Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR118ngnoR118Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003836NSK003836Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G00500.1NO05G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669698gene_2842Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100109g20gene2241Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G00500.1NO05G00500.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G00500 ID=NO05G00500|Name=NO05G00500|organism=Nannochloropsis oceanica|type=gene|length=1756bp
ACAGAGTAGGCGCGCCTAGACAGAGCGAAGCCCAGCTCGGTTCATCTCGC
CGGTTTGCTCACAATTCAATAAAAAGGGTGGGTATGAAGACCAAGGAGGG
GAGCAGCAACAGTAGCAGTGGCATGATGGGTGGCAGCGGTGCCGGAACCG
GTAGTCGGGATGGGGGTGGACGCATAACCAAGAAAAAGAAGCTGAAGGGC
AAACTCTTCACCCTGACAACAGGGCCTTTGCCTCAGCCGAAATTCAAGGC
GATTGTTGCgtaagtgatggaggagagggagggaggaagggagcaaagga
ggcagagccaggggcaggcgcttgtaaatgacgcttgagtataacttaaa
ttgtgtggctagagaggggagggagaacacgaaggcatgtacgaggctct
tgctctttgtacacccctctcataacccaactaccaaaccatccccttcc
tccattccctccctccctccctctctctctccacagCGCCATCTATGCCC
GCAAGCAAGCAGAGGCGGAAGAGCTCCGGGTCAAAATAATGGCAAACGCC
CGACACGCCGAGGAAGAAGCCTACCTGCGGAGCAGCAGCAACAGCAACGA
CCACAACAACAACAACGACAACGAAATTAACAAGAACAACAACAACGGTG
GCAACAACGATAACAACGATAGCGTTATCAGAACAATTGAAGCATCAGCA
GCTACAGGGGCATTGCCACGAGTGTTGGAGACGGGATTGGAAGCACTCAG
GGATTTTGATGAGAATGGACGACGGAATCGCAAGTCAGCTGCAGCAGTGT
CGTCTTCCTTGGTGGCGGGGGTGCGAGGAGGAGGAGGAGGAGGAGGAGGA
AGAGGAGTAGGAGGAGGGCAGGCAGATAGCAGTGATGAGGAGGATGAGAT
GGAAGAAGGGAAGGGAGGGAGGGAAGGAATGCCTGCTGGATTAGGAGGGA
GGAAGAGGCAGAAGACTATGGCGGATGTCGTGCAGCTGCATCGGGATTTA
TCGGACCTTCAACGGACGAGGACGGAATTAAGGTGGTTGCTGGGACAGGT
GGAGAGGTTGGAGTATGAGAGTCTGTAGGGGCTGAAGGGAGGGACGGAGG
GATGTAGGTAATGAAGGAGGGAAAGATAACAGCGAATCGCAGTCATGGAG
GTGACGGAGGGACAAAGATAGGGAGACGACGCGTGCCCCGACATAAATAG
GGATGTGGATGTCGATTTGGAAATTTTGATTGACTTTCTTGCTTAAGAAG
GAGTAAATAAGGTCGGTTTTATACATACATATGTGCAGGTGAGGAGGGAA
GAAAAACAAGAAGAGAAAGAGAAAGAAGAAGGGAGAAGAGGCAGAGTGTT
CATTGTGTGGGGAGGGGATTTTGGATATGGGTGTAGTTATATTAAAAGAG
AGGATGACGTCAGGGACAAGGGATGACTGCCGAGAGGATGGGAATGCGTA
TCCATATGCTGAGAGAGAAATGACGCAGTTAAGTAATCGGCCGTTTTTAA
AAAAGGCCGTCTTTGTCCCTTTCCAAGTCGGGGGGAAGGGGCGGTAAAAT
TGTGGGCAATATCTTGAATGTTCTCTTTTCTTCCTTTGGCTGGCGGGGCT
TCAGAGAGTTTTGACCTTCACGTCCCCGCGGGCAACGGGAGGCGGTTCAC
ATAGACAAAAGAAGGCATCTGAATTTATCACATGTCATTTGAGGAGGGGA
GAGAGTGATAAGTATCAACAGAAATTGTGCTGCCTTCGAAAAATTAATAA
CGAAAT
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protein sequence of NO05G00500.1

>NO05G00500.1-protein ID=NO05G00500.1-protein|Name=NO05G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MKTKEGSSNSSSGMMGGSGAGTGSRDGGGRITKKKKLKGKLFTLTTGPLP
QPKFKAIVAAIYARKQAEAEELRVKIMANARHAEEEAYLRSSSNSNDHNN
NNDNEINKNNNNGGNNDNNDSVIRTIEASAATGALPRVLETGLEALRDFD
ENGRRNRKSAAAVSSSLVAGVRGGGGGGGGRGVGGGQADSSDEEDEMEEG
KGGREGMPAGLGGRKRQKTMADVVQLHRDLSDLQRTRTELRWLLGQVERL
EYESL*
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Synonyms
Publications