NO05G00500.1, NO05G00500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G00500.1
Unique NameNO05G00500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1529
Alignment locationchr5:178548..180303 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:178548..180303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G00500.1 vs.
Match: EWM28328.1 (hypothetical protein Naga_100109g20 [Nannochloropsis gaditana])

HSP 1 Score: 157.5 bits (397), Expect = 5.400e-35
Identity = 125/256 (48.83%), Postives = 153/256 (59.77%), Query Frame = 0 
Query:    5 EGSSNSSSGMMGGSGAGTGSRDGGGRITKKKKLKGKLFTLTTGPLPQPKFKAIVAAIYARKQAEAEELRVKIMANARHAEEEAYLRSSSNSNDHNNNNDNEINKNNNNGGNNDNNDSVIRTIEASAATGALPRVLETGLEALRDFDENGRRNRKSAAAVSSSLVAGVRGGGGGGGGRGVGGGQADSSDEEDEMEEGKGGREGMPA-----GLGGRKRQKTMADVVQLHRDLSDLQRTRTELRWLLGQVERLEYESL 256
            +GS+  +   + G   G  +R       KKKK+KGKLFTLTT PLP+ KFKAIVAA+YARKQAEAEELR +I+ NA+ AEEEA+ R   +S              N  GG  D              T ALP+VLE+G +AL+ +DE+GRR    A     SL+ G  G      G+   G + +  D  DE EEG GG EG        G  GRKR++TMAD+VQLHRDL++LQRTRTELRWLL QVERLEYESL
Sbjct:    2 KGSNTRTDDSLSGIRRGDATRK-----VKKKKIKGKLFTLTTSPLPKAKFKAIVAAVYARKQAEAEELRTQIIHNAKLAEEEAFSRHGLDSC-------------NQAGGCGDE-------------TQALPKVLESGFDALKAYDEHGRRIAPKALTTVPSLMLG-SGRWREREGKVAAGRKGEEEDSSDEEEEG-GGEEGQDTLAVSQGGKGRKREQTMADLVQLHRDLAELQRTRTELRWLLEQVERLEYESL 224
The following BLAST results are available for this feature:
BLAST of NO05G00500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28328.15.400e-3548.83hypothetical protein Naga_100109g20 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G00500NO05G00500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G00500.1NO05G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G00500.1.cds1NO05G00500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G00500.1.cds2NO05G00500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G00500.1 ID=NO05G00500.1|Name=NO05G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1529bp
ACAGAGTAGGCGCGCCTAGACAGAGCGAAGCCCAGCTCGGTTCATCTCGC
CGGTTTGCTCACAATTCAATAAAAAGGGTGGGTATGAAGACCAAGGAGGG
GAGCAGCAACAGTAGCAGTGGCATGATGGGTGGCAGCGGTGCCGGAACCG
GTAGTCGGGATGGGGGTGGACGCATAACCAAGAAAAAGAAGCTGAAGGGC
AAACTCTTCACCCTGACAACAGGGCCTTTGCCTCAGCCGAAATTCAAGGC
GATTGTTGCCGCCATCTATGCCCGCAAGCAAGCAGAGGCGGAAGAGCTCC
GGGTCAAAATAATGGCAAACGCCCGACACGCCGAGGAAGAAGCCTACCTG
CGGAGCAGCAGCAACAGCAACGACCACAACAACAACAACGACAACGAAAT
TAACAAGAACAACAACAACGGTGGCAACAACGATAACAACGATAGCGTTA
TCAGAACAATTGAAGCATCAGCAGCTACAGGGGCATTGCCACGAGTGTTG
GAGACGGGATTGGAAGCACTCAGGGATTTTGATGAGAATGGACGACGGAA
TCGCAAGTCAGCTGCAGCAGTGTCGTCTTCCTTGGTGGCGGGGGTGCGAG
GAGGAGGAGGAGGAGGAGGAGGAAGAGGAGTAGGAGGAGGGCAGGCAGAT
AGCAGTGATGAGGAGGATGAGATGGAAGAAGGGAAGGGAGGGAGGGAAGG
AATGCCTGCTGGATTAGGAGGGAGGAAGAGGCAGAAGACTATGGCGGATG
TCGTGCAGCTGCATCGGGATTTATCGGACCTTCAACGGACGAGGACGGAA
TTAAGGTGGTTGCTGGGACAGGTGGAGAGGTTGGAGTATGAGAGTCTGTA
GGGGCTGAAGGGAGGGACGGAGGGATGTAGGTAATGAAGGAGGGAAAGAT
AACAGCGAATCGCAGTCATGGAGGTGACGGAGGGACAAAGATAGGGAGAC
GACGCGTGCCCCGACATAAATAGGGATGTGGATGTCGATTTGGAAATTTT
GATTGACTTTCTTGCTTAAGAAGGAGTAAATAAGGTCGGTTTTATACATA
CATATGTGCAGGTGAGGAGGGAAGAAAAACAAGAAGAGAAAGAGAAAGAA
GAAGGGAGAAGAGGCAGAGTGTTCATTGTGTGGGGAGGGGATTTTGGATA
TGGGTGTAGTTATATTAAAAGAGAGGATGACGTCAGGGACAAGGGATGAC
TGCCGAGAGGATGGGAATGCGTATCCATATGCTGAGAGAGAAATGACGCA
GTTAAGTAATCGGCCGTTTTTAAAAAAGGCCGTCTTTGTCCCTTTCCAAG
TCGGGGGGAAGGGGCGGTAAAATTGTGGGCAATATCTTGAATGTTCTCTT
TTCTTCCTTTGGCTGGCGGGGCTTCAGAGAGTTTTGACCTTCACGTCCCC
GCGGGCAACGGGAGGCGGTTCACATAGACAAAAGAAGGCATCTGAATTTA
TCACATGTCATTTGAGGAGGGGAGAGAGTGATAAGTATCAACAGAAATTG
TGCTGCCTTCGAAAAATTAATAACGAAAT
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protein sequence of NO05G00500.1

>NO05G00500.1-protein ID=NO05G00500.1-protein|Name=NO05G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MKTKEGSSNSSSGMMGGSGAGTGSRDGGGRITKKKKLKGKLFTLTTGPLP
QPKFKAIVAAIYARKQAEAEELRVKIMANARHAEEEAYLRSSSNSNDHNN
NNDNEINKNNNNGGNNDNNDSVIRTIEASAATGALPRVLETGLEALRDFD
ENGRRNRKSAAAVSSSLVAGVRGGGGGGGGRGVGGGQADSSDEEDEMEEG
KGGREGMPAGLGGRKRQKTMADVVQLHRDLSDLQRTRTELRWLLGQVERL
EYESL*
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mRNA from alignment at chr5:178548..180303+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G00500.1 ID=NO05G00500.1|Name=NO05G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1756bp|location=Sequence derived from alignment at chr5:178548..180303+ (Nannochloropsis oceanica)
ACAGAGTAGGCGCGCCTAGACAGAGCGAAGCCCAGCTCGGTTCATCTCGC
CGGTTTGCTCACAATTCAATAAAAAGGGTGGGTATGAAGACCAAGGAGGG
GAGCAGCAACAGTAGCAGTGGCATGATGGGTGGCAGCGGTGCCGGAACCG
GTAGTCGGGATGGGGGTGGACGCATAACCAAGAAAAAGAAGCTGAAGGGC
AAACTCTTCACCCTGACAACAGGGCCTTTGCCTCAGCCGAAATTCAAGGC
GATTGTTGCGTAAGTGATGGAGGAGAGGGAGGGAGGAAGGGAGCAAAGGA
GGCAGAGCCAGGGGCAGGCGCTTGTAAATGACGCTTGAGTATAACTTAAA
TTGTGTGGCTAGAGAGGGGAGGGAGAACACGAAGGCATGTACGAGGCTCT
TGCTCTTTGTACACCCCTCTCATAACCCAACTACCAAACCATCCCCTTCC
TCCATTCCCTCCCTCCCTCCCTCTCTCTCTCCACAGCGCCATCTATGCCC
GCAAGCAAGCAGAGGCGGAAGAGCTCCGGGTCAAAATAATGGCAAACGCC
CGACACGCCGAGGAAGAAGCCTACCTGCGGAGCAGCAGCAACAGCAACGA
CCACAACAACAACAACGACAACGAAATTAACAAGAACAACAACAACGGTG
GCAACAACGATAACAACGATAGCGTTATCAGAACAATTGAAGCATCAGCA
GCTACAGGGGCATTGCCACGAGTGTTGGAGACGGGATTGGAAGCACTCAG
GGATTTTGATGAGAATGGACGACGGAATCGCAAGTCAGCTGCAGCAGTGT
CGTCTTCCTTGGTGGCGGGGGTGCGAGGAGGAGGAGGAGGAGGAGGAGGA
AGAGGAGTAGGAGGAGGGCAGGCAGATAGCAGTGATGAGGAGGATGAGAT
GGAAGAAGGGAAGGGAGGGAGGGAAGGAATGCCTGCTGGATTAGGAGGGA
GGAAGAGGCAGAAGACTATGGCGGATGTCGTGCAGCTGCATCGGGATTTA
TCGGACCTTCAACGGACGAGGACGGAATTAAGGTGGTTGCTGGGACAGGT
GGAGAGGTTGGAGTATGAGAGTCTGTAGGGGCTGAAGGGAGGGACGGAGG
GATGTAGGTAATGAAGGAGGGAAAGATAACAGCGAATCGCAGTCATGGAG
GTGACGGAGGGACAAAGATAGGGAGACGACGCGTGCCCCGACATAAATAG
GGATGTGGATGTCGATTTGGAAATTTTGATTGACTTTCTTGCTTAAGAAG
GAGTAAATAAGGTCGGTTTTATACATACATATGTGCAGGTGAGGAGGGAA
GAAAAACAAGAAGAGAAAGAGAAAGAAGAAGGGAGAAGAGGCAGAGTGTT
CATTGTGTGGGGAGGGGATTTTGGATATGGGTGTAGTTATATTAAAAGAG
AGGATGACGTCAGGGACAAGGGATGACTGCCGAGAGGATGGGAATGCGTA
TCCATATGCTGAGAGAGAAATGACGCAGTTAAGTAATCGGCCGTTTTTAA
AAAAGGCCGTCTTTGTCCCTTTCCAAGTCGGGGGGAAGGGGCGGTAAAAT
TGTGGGCAATATCTTGAATGTTCTCTTTTCTTCCTTTGGCTGGCGGGGCT
TCAGAGAGTTTTGACCTTCACGTCCCCGCGGGCAACGGGAGGCGGTTCAC
ATAGACAAAAGAAGGCATCTGAATTTATCACATGTCATTTGAGGAGGGGA
GAGAGTGATAAGTATCAACAGAAATTGTGCTGCCTTCGAAAAATTAATAA
CGAAAT
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Coding sequence (CDS) from alignment at chr5:178548..180303+

>NO05G00500.1 ID=NO05G00500.1|Name=NO05G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr5:178548..180303+ (Nannochloropsis oceanica)
ATGAAGACCAAGGAGGGGAGCAGCAACAGTAGCAGTGGCATGATGGGTGG
CAGCGGTGCCGGAACCGGTAGTCGGGATGGGGGTGGACGCATAACCAAGA
AAAAGAAGCTGAAGGGCAAACTCTTCACCCTGACAACAGGGCCTTTGCCT
CAGCCGAAATTCAAGGCGATTGTTGCCGCCATCTATGCCCGCAAGCAAGC
AGAGGCGGAAGAGCTCCGGGTCAAAATAATGGCAAACGCCCGACACGCCG
AGGAAGAAGCCTACCTGCGGAGCAGCAGCAACAGCAACGACCACAACAAC
AACAACGACAACGAAATTAACAAGAACAACAACAACGGTGGCAACAACGA
TAACAACGATAGCGTTATCAGAACAATTGAAGCATCAGCAGCTACAGGGG
CATTGCCACGAGTGTTGGAGACGGGATTGGAAGCACTCAGGGATTTTGAT
GAGAATGGACGACGGAATCGCAAGTCAGCTGCAGCAGTGTCGTCTTCCTT
GGTGGCGGGGGTGCGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGTAG
GAGGAGGGCAGGCAGATAGCAGTGATGAGGAGGATGAGATGGAAGAAGGG
AAGGGAGGGAGGGAAGGAATGCCTGCTGGATTAGGAGGGAGGAAGAGGCA
GAAGACTATGGCGGATGTCGTGCAGCTGCATCGGGATTTATCGGACCTTC
AACGGACGAGGACGGAATTAAGGTGGTTGCTGGGACAGGTGGAGAGGTTG
GAGTATGAGAGTCTGTAG
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Synonyms
Publications