NO04G05150, NO04G05150 (gene) Nannochloropsis oceanica

Overview
NameNO04G05150
Unique NameNO04G05150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1770
Alignment locationchr4:1435673..1437442 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1435673..1437442 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021995DUF3593
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO04G05150 vs. NCBI_GenBank
Match: EWM28918.1 (Protein of unknown function DUF3593 [Nannochloropsis gaditana])

HSP 1 Score: 219.5 bits (558), Expect = 1.100e-53
Identity = 107/129 (82.95%), Postives = 118/129 (91.47%), Query Frame = 0
Query:  110 GDWLETAGTYTLNWLKEVNYGAVFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRGGERPERWTEDGGVD 239
            GD LE AGT+TL+WL  VNYGAVFA SLFPYL FLKNIW +D+PIPKTMKWGFASLLIFV+STIIGGIAAKLIY+++LAN+DYIHGVAESLLGVTNIVLAIAAFRALEAAKKDR GERP  WTE+G +D
Sbjct:  112 GDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLD 240          
BLAST of NO04G05150 vs. NCBI_GenBank
Match: XP_005853976.1 (hypothetical protein NGA_0502100 [Nannochloropsis gaditana CCMP526] >EKU22384.1 hypothetical protein NGA_0502100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 205.7 bits (522), Expect = 1.600e-49
Identity = 123/225 (54.67%), Postives = 140/225 (62.22%), Query Frame = 0
Query:   66 SPAFPSRTSPLEATLPDFDLIQSTTTGVLSLLSSP----PSVLLAGQ----DGDWLETAGTYTLNWLKEVNYGAVFASSLFPYLWFLKNIWADDFPIPK--------------------------------------------TMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRGGERPERWTEDGGVD 239
            SPAF +    L A L D +  +   T +L L S P    PS++   Q     GD LE AGT+TL+WL  VNYGAVFA SLFPYL FLKNIW +D+PIPK                                            TMKWGFASLLIFV+STIIGGIAAKLIY+++LAN+DYIHGVAESLLGVTNIVLAIAAFRALEAAKKDR GERP  WTE+G +D
Sbjct:   79 SPAFVA----LSAGLVDTETARGAITSLLPLSSPPAAAMPSLVAIAQGTEGKGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKVGGGCPKLLLFEHSRERATRSIASSAWRTSTDFRFPAPSSPSPQTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLD 299          
BLAST of NO04G05150 vs. NCBI_GenBank
Match: CBN78626.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.9 bits (198), Expect = 6.000e-12
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 0
Query:  132 VFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRGGE 227
            +F +SLFPYL FL  +   +   P+   +GFA LL+FV++TI  GI AK  Y+E+LAN+DY+HG+AES L +TN+ +  A  +A+   +   GGE
Sbjct:   42 LFQASLFPYLAFLWLLSRKETKTPEGGTFGFAFLLVFVVATIPAGIYAKTEYNEILANVDYLHGIAESFLTLTNLFIVSAFRKAVVGKQPAAGGE 136          
BLAST of NO04G05150 vs. NCBI_GenBank
Match: XP_005714398.1 (unnamed protein product [Chondrus crispus] >CDF34579.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 80.5 bits (197), Expect = 7.900e-12
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 0
Query:  133 FASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAI 211
            FA+SLFPYL FL  +  D+   PK   +GF  LL+FV +TI  GI AK+ Y ++LANID++HG AESLL +TN+++ +
Sbjct:   61 FAASLFPYLGFLYYLGRDEVKCPKLANFGFRFLLVFVFATIPAGIYAKVHYHDILANIDWLHGGAESLLTITNLLIVL 138          
BLAST of NO04G05150 vs. NCBI_GenBank
Match: XP_007514713.1 (predicted protein [Bathycoccus prasinos] >CCO14953.1 predicted protein [Bathycoccus prasinos])

HSP 1 Score: 79.3 bits (194), Expect = 1.800e-11
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 0
Query:  132 VFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAKK 222
            +FA+SLFPYL+FL  +   +   PK   +GF  LL+FV +TI  GI AK+ Y ++LAN+D++HG AESLL +TN+++ +     L  A++
Sbjct:  125 LFAASLFPYLFFLFFLGKPETAFPKRALFGFKFLLVFVFATIPAGIYAKVHYSDILANVDWLHGGAESLLTITNLLIVLGMREGLRDAER 214          
BLAST of NO04G05150 vs. NCBI_GenBank
Match: CEM23009.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 78.2 bits (191), Expect = 3.900e-11
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 0
Query:  130 GAVFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRAL 217
            G +FA+SLFPYL FL  +   +  +P+   +GF  LL+FV  TI  GI AK+ Y+E LAN+DY+HG AES L VTN+++ I   +A+
Sbjct:   22 GQLFAASLFPYLAFLWFLSRPETRMPRLANFGFQFLLVFVGMTIPAGILAKVWYNEKLANVDYLHGGAESFLTVTNLLIVIGMRQAI 108          
BLAST of NO04G05150 vs. NCBI_GenBank
Match: WP_019498158.1 (DUF3593 domain-containing protein [Pseudanabaena sp. PCC 6802])

HSP 1 Score: 76.6 bits (187), Expect = 1.100e-10
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 0
Query:  131 AVFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAKK 222
            A+FA SLFPYL FL  I      +PK   WGF   L+FV  TI  GI AKL+Y E LAN+D++HG AESLL + NI++ +    A +  +K
Sbjct:    6 ALFALSLFPYLAFLWFITRSG-KMPKLALWGFYGTLVFVAVTIPVGIYAKLVYKESLANVDFLHGGAESLLTIANILIVLGFKNASDRLRK 95          
BLAST of NO04G05150 vs. NCBI_GenBank
Match: GAX14921.1 (hypothetical protein FisN_12Lh381 [Fistulifera solaris])

HSP 1 Score: 76.3 bits (186), Expect = 1.500e-10
Identity = 53/131 (40.46%), Postives = 71/131 (54.20%), Query Frame = 0
Query:  102 SVLLAGQDGDWLETAGTYTLNWLKEVNYGAVFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRGGERPERWT 233
            + LLA  D D  E               G  F +SLFPYL FL  +   +   PK +  GFA+ L+FV  TI   IAAK++Y   LA+ D++HG AESLL +TN+V  IA  +AL A  K++G   P+  T
Sbjct:   59 TTLLANMDADTAEALA------------GPFFGASLFPYLAFLYFLDRPENETPKGVTVGFATCLLFVFLTIPAAIAAKVLYGVSLADSDWLHGSAESLLTMTNLVTVIAFRQALRA--KEQGLPPPQSAT 175          
BLAST of NO04G05150 vs. NCBI_GenBank
Match: XP_002504984.1 (predicted protein [Micromonas commoda] >ACO66242.1 predicted protein [Micromonas commoda])

HSP 1 Score: 75.1 bits (183), Expect = 3.300e-10
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 0
Query:  126 EVNYGAVFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAK 221
            E+  G +F +SL PYL FL  +   +  +P    +GF  LL+FV  TI   I AKL+Y+++LAN+D++HG AESLL +TN+++ I     L   K
Sbjct:   88 ELIEGNLFGASLLPYLVFLYYLGMPESKMPPRALFGFKFLLVFVFGTIPCAIYAKLVYNDILANVDWLHGPAESLLTITNLLIVIGLREGLRDLK 182          
BLAST of NO04G05150 vs. NCBI_GenBank
Match: EJK60591.1 (hypothetical protein THAOC_19021 [Thalassiosira oceanica])

HSP 1 Score: 74.7 bits (182), Expect = 4.300e-10
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 0
Query:  130 GAVFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRAL 217
            G  F  SLFPYL FL  +  D+   PK +  GFA+ L+FV  TI   IAAKL+Y   LA+ D++HG AESLL +TN+V  +A  +AL
Sbjct:   11 GPFFGLSLFPYLGFLYLLNVDENNTPKGVVVGFATCLLFVFLTIPAAIAAKLLYGVSLADSDWLHGSAESLLTITNLVTVVAFRQAL 97          
The following BLAST results are available for this feature:
BLAST of NO04G05150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28918.11.100e-5382.95Protein of unknown function DUF3593 [Nannochlorops... [more]
XP_005853976.11.600e-4954.67hypothetical protein NGA_0502100 [Nannochloropsis ... [more]
CBN78626.16.000e-1245.26conserved unknown protein [Ectocarpus siliculosus][more]
XP_005714398.17.900e-1251.28unnamed protein product [Chondrus crispus] >CDF345... [more]
XP_007514713.11.800e-1144.44predicted protein [Bathycoccus prasinos] >CCO14953... [more]
CEM23009.13.900e-1148.28unnamed protein product [Vitrella brassicaformis C... [more]
WP_019498158.11.100e-1048.35DUF3593 domain-containing protein [Pseudanabaena s... [more]
GAX14921.11.500e-1040.46hypothetical protein FisN_12Lh381 [Fistulifera sol... [more]
XP_002504984.13.300e-1042.11predicted protein [Micromonas commoda] >ACO66242.1... [more]
EJK60591.14.300e-1049.43hypothetical protein THAOC_19021 [Thalassiosira oc... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL075nonsL075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR107ngnoR107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007594NSK007594Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G05150.1NO04G05150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|300091gene_2302Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100441g4gene1690Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G05150.1NO04G05150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G05150 ID=NO04G05150|Name=NO04G05150|organism=Nannochloropsis oceanica|type=gene|length=1770bp
ATTGCGAGAAAGCGAAGCAAGCGGCGAGACTTTCGGCGGCTACCTTTGAC
TCGCACTCGTTGTAACTGTGTTAAATGTGTTAACATTCACCACAATCCCA
CCCCACCACCACCACACCATTGCAGACACTACTTCTAGCTACGGGTTTCC
GCGCCACGCCTACATAAAAAAGTGTGCCCGACCTCCCGACCCTGCTTCAG
TTCAATCCGTAAATCCAACACAGCAAGTACAATGCACAGGAGAAGAAGAC
AACAACCACGACACCGGCCCCTTATCCTCGCACTTGCTTCCTTTTCCTTC
CTCATGGCAGCGATTATCATCAGTGCGCCAGTCAGAGCCTTCGTGCCCAT
GCGTCTACCTTCTAGTCAGATGGTGTCCCGCCTCCCTTCCTCCTCTCCAT
CATCTCGCTCAAAgtgagttttccgggcgctgcgatgctatccctccttt
atccccgtccgtcccgtctcccttctccccgtgccctgctcacacactac
gcacgacctaacccacatcaaggaaaataagggatgacaacaatttcttg
ttggaaggctccccctcgtatgcaagtcctcgaagacgtcaggttgcatg
cgatagttctagagagatgtaggaacgctccaaagaactaacccacatct
acacacatagACGATCATCCTTATCGCCCGCTTTCCCTTCTCGGACTTCT
CCCCTCGAGGCCACTCTCCCCGATTTCGACTTGATTCAGAGCACCACCAC
CGGGGTCCTCTCCCTCCTCTCCTCCCCCCCTTCCGTCCTCCTCGCTGGCC
AAGATGGCGATTGGCTGGAGACCGCAGGGACATACACGCTGAATTGGTTG
AAGGAGGTGAATTACGGTGCAGTCTTTGCCTCGTCCTTGTTTCCTTACTT
GTGGTTTCTGAAGAATATCTGGGCTGACGACTTTCCCATACCAAAGgtag
ggagggagggaggcagggagaaagggagggagggagggggactggtgaag
agattgcgccttgggttcttcttttcttttgaattgttcacgtttcttgt
ccgagcaggccttgttctctctagatcacacgctccctccaccccttgcc
ctccctccctccccccctccctccctccctccacgccttcagACGATGAA
ATGGGGCTTTGCCTCCCTTTTGATTTTCGTCATCTCCACCATTATCGGAG
GGATCGCGGCCAAGCTCATCTACGACGAGCTCCTGGCCAACATCGACTAC
ATTCACGGCGTGGCTGAGTCCTTGCTAGgtacgcccttcctccctccctc
cctccctccctccctccctccctccctcccacactccctcactcctttat
caatctttgcatcatccccttccctccttggcatttagcggctgtgattt
catgccattagtgctatggtttctgtgtcaacctctccggcttatcctaa
acagaaccctccagaaagcgacccgccgtctgaatcccttcgtcctcctc
gcctgacctcacttccctcttctctaactctcgtcccatcctttctccct
ccattcctctctactcaccggcagGCGTCACCAACATAGTTCTGGCCATC
GCCGCGTTTCGAGCCTTGGAAGCTGCCAAGAAAGACAGGGGTGGGGAGCG
GCCGGAAAGATGGACGGAGGACGGTGGAGTGGATGTGTGAAAAAAAGAAA
GGGAGAGAAGACCGAAGGGGTGTCGTTTCCTTCGACTAATTAAAAATCGA
GATATTTTAGATTGCTCTCG
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protein sequence of NO04G05150.1

>NO04G05150.1-protein ID=NO04G05150.1-protein|Name=NO04G05150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MHRRRRQQPRHRPLILALASFSFLMAAIIISAPVRAFVPMRLPSSQMVSR
LPSSSPSSRSKRSSLSPAFPSRTSPLEATLPDFDLIQSTTTGVLSLLSSP
PSVLLAGQDGDWLETAGTYTLNWLKEVNYGAVFASSLFPYLWFLKNIWAD
DFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESL
LGVTNIVLAIAAFRALEAAKKDRGGERPERWTEDGGVDV*
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Synonyms
Publications