NO04G05150.1, NO04G05150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05150.1
Unique NameNO04G05150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1031
Alignment locationchr4:1435673..1437442 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1435673..1437442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G05150.1 vs.
Match: EWM28918.1 (Protein of unknown function DUF3593 [Nannochloropsis gaditana])

HSP 1 Score: 213.0 bits (541), Expect = 1.000e-51
Identity = 132/243 (54.32%), Postives = 153/243 (62.96%), Query Frame = 0 
Query:   23 FLMAAIIISAP-------VRAFVPMRLPSSQMVSRLPSSS------------------PSSRSKRSSLSPAFPSRTSPLE--ATLPDFDLIQSTTTGVLSLLSSPPSVLLAGQDGDWLETAGTYTLNWLKEVNYGAVFASSLFPYLWFLKNIWADDFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRGGERPERWTEDGGVD 239
            +L+A +++S         V AFVP+ L     +SR PS                    P+S   R  + P   S  SP    A +P    I   T G                 GD LE AGT+TL+WL  VNYGAVFA SLFPYL FLKNIW +D+PIPKTMKWGFASLLIFV+STIIGGIAAKLIY+++LAN+DYIHGVAESLLGVTNIVLAIAAFRALEAAKKDR GERP  WTE+G +D
Sbjct:   14 YLLALLVVSHMAGRRSKCVHAFVPIHLSYGPDLSRGPSRCGPPARKLSPPRPLSWALVPASSILRQHVVPLPASSLSPPPPAAAMPSLVAITQGTEG----------------KGDLLEAAGTFTLDWLNNVNYGAVFALSLFPYLIFLKNIWPEDYPIPKTMKWGFASLLIFVVSTIIGGIAAKLIYNDVLANVDYIHGVAESLLGVTNIVLAIAAFRALEAAKKDRNGERPSVWTENGDLD 240
The following BLAST results are available for this feature:
BLAST of NO04G05150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28918.11.000e-5154.32Protein of unknown function DUF3593 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05150NO04G05150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05150.1NO04G05150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05150.1.cds1NO04G05150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05150.1.cds2NO04G05150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05150.1.cds3NO04G05150.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05150.1.cds4NO04G05150.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05150.1 ID=NO04G05150.1|Name=NO04G05150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1031bp
ATTGCGAGAAAGCGAAGCAAGCGGCGAGACTTTCGGCGGCTACCTTTGAC
TCGCACTCGTTGTAACTGTGTTAAATGTGTTAACATTCACCACAATCCCA
CCCCACCACCACCACACCATTGCAGACACTACTTCTAGCTACGGGTTTCC
GCGCCACGCCTACATAAAAAAGTGTGCCCGACCTCCCGACCCTGCTTCAG
TTCAATCCGTAAATCCAACACAGCAAGTACAATGCACAGGAGAAGAAGAC
AACAACCACGACACCGGCCCCTTATCCTCGCACTTGCTTCCTTTTCCTTC
CTCATGGCAGCGATTATCATCAGTGCGCCAGTCAGAGCCTTCGTGCCCAT
GCGTCTACCTTCTAGTCAGATGGTGTCCCGCCTCCCTTCCTCCTCTCCAT
CATCTCGCTCAAAACGATCATCCTTATCGCCCGCTTTCCCTTCTCGGACT
TCTCCCCTCGAGGCCACTCTCCCCGATTTCGACTTGATTCAGAGCACCAC
CACCGGGGTCCTCTCCCTCCTCTCCTCCCCCCCTTCCGTCCTCCTCGCTG
GCCAAGATGGCGATTGGCTGGAGACCGCAGGGACATACACGCTGAATTGG
TTGAAGGAGGTGAATTACGGTGCAGTCTTTGCCTCGTCCTTGTTTCCTTA
CTTGTGGTTTCTGAAGAATATCTGGGCTGACGACTTTCCCATACCAAAGA
CGATGAAATGGGGCTTTGCCTCCCTTTTGATTTTCGTCATCTCCACCATT
ATCGGAGGGATCGCGGCCAAGCTCATCTACGACGAGCTCCTGGCCAACAT
CGACTACATTCACGGCGTGGCTGAGTCCTTGCTAGGCGTCACCAACATAG
TTCTGGCCATCGCCGCGTTTCGAGCCTTGGAAGCTGCCAAGAAAGACAGG
GGTGGGGAGCGGCCGGAAAGATGGACGGAGGACGGTGGAGTGGATGTGTG
AAAAAAAGAAAGGGAGAGAAGACCGAAGGGGTGTCGTTTCCTTCGACTAA
TTAAAAATCGAGATATTTTAGATTGCTCTCG
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protein sequence of NO04G05150.1

>NO04G05150.1-protein ID=NO04G05150.1-protein|Name=NO04G05150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MHRRRRQQPRHRPLILALASFSFLMAAIIISAPVRAFVPMRLPSSQMVSR
LPSSSPSSRSKRSSLSPAFPSRTSPLEATLPDFDLIQSTTTGVLSLLSSP
PSVLLAGQDGDWLETAGTYTLNWLKEVNYGAVFASSLFPYLWFLKNIWAD
DFPIPKTMKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESL
LGVTNIVLAIAAFRALEAAKKDRGGERPERWTEDGGVDV*
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mRNA from alignment at chr4:1435673..1437442+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05150.1 ID=NO04G05150.1|Name=NO04G05150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp|location=Sequence derived from alignment at chr4:1435673..1437442+ (Nannochloropsis oceanica)
ATTGCGAGAAAGCGAAGCAAGCGGCGAGACTTTCGGCGGCTACCTTTGAC
TCGCACTCGTTGTAACTGTGTTAAATGTGTTAACATTCACCACAATCCCA
CCCCACCACCACCACACCATTGCAGACACTACTTCTAGCTACGGGTTTCC
GCGCCACGCCTACATAAAAAAGTGTGCCCGACCTCCCGACCCTGCTTCAG
TTCAATCCGTAAATCCAACACAGCAAGTACAATGCACAGGAGAAGAAGAC
AACAACCACGACACCGGCCCCTTATCCTCGCACTTGCTTCCTTTTCCTTC
CTCATGGCAGCGATTATCATCAGTGCGCCAGTCAGAGCCTTCGTGCCCAT
GCGTCTACCTTCTAGTCAGATGGTGTCCCGCCTCCCTTCCTCCTCTCCAT
CATCTCGCTCAAAGTGAGTTTTCCGGGCGCTGCGATGCTATCCCTCCTTT
ATCCCCGTCCGTCCCGTCTCCCTTCTCCCCGTGCCCTGCTCACACACTAC
GCACGACCTAACCCACATCAAGGAAAATAAGGGATGACAACAATTTCTTG
TTGGAAGGCTCCCCCTCGTATGCAAGTCCTCGAAGACGTCAGGTTGCATG
CGATAGTTCTAGAGAGATGTAGGAACGCTCCAAAGAACTAACCCACATCT
ACACACATAGACGATCATCCTTATCGCCCGCTTTCCCTTCTCGGACTTCT
CCCCTCGAGGCCACTCTCCCCGATTTCGACTTGATTCAGAGCACCACCAC
CGGGGTCCTCTCCCTCCTCTCCTCCCCCCCTTCCGTCCTCCTCGCTGGCC
AAGATGGCGATTGGCTGGAGACCGCAGGGACATACACGCTGAATTGGTTG
AAGGAGGTGAATTACGGTGCAGTCTTTGCCTCGTCCTTGTTTCCTTACTT
GTGGTTTCTGAAGAATATCTGGGCTGACGACTTTCCCATACCAAAGGTAG
GGAGGGAGGGAGGCAGGGAGAAAGGGAGGGAGGGAGGGGGACTGGTGAAG
AGATTGCGCCTTGGGTTCTTCTTTTCTTTTGAATTGTTCACGTTTCTTGT
CCGAGCAGGCCTTGTTCTCTCTAGATCACACGCTCCCTCCACCCCTTGCC
CTCCCTCCCTCCCCCCCTCCCTCCCTCCCTCCACGCCTTCAGACGATGAA
ATGGGGCTTTGCCTCCCTTTTGATTTTCGTCATCTCCACCATTATCGGAG
GGATCGCGGCCAAGCTCATCTACGACGAGCTCCTGGCCAACATCGACTAC
ATTCACGGCGTGGCTGAGTCCTTGCTAGGTACGCCCTTCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACACTCCCTCACTCCTTTAT
CAATCTTTGCATCATCCCCTTCCCTCCTTGGCATTTAGCGGCTGTGATTT
CATGCCATTAGTGCTATGGTTTCTGTGTCAACCTCTCCGGCTTATCCTAA
ACAGAACCCTCCAGAAAGCGACCCGCCGTCTGAATCCCTTCGTCCTCCTC
GCCTGACCTCACTTCCCTCTTCTCTAACTCTCGTCCCATCCTTTCTCCCT
CCATTCCTCTCTACTCACCGGCAGGCGTCACCAACATAGTTCTGGCCATC
GCCGCGTTTCGAGCCTTGGAAGCTGCCAAGAAAGACAGGGGTGGGGAGCG
GCCGGAAAGATGGACGGAGGACGGTGGAGTGGATGTGTGAAAAAAAGAAA
GGGAGAGAAGACCGAAGGGGTGTCGTTTCCTTCGACTAATTAAAAATCGA
GATATTTTAGATTGCTCTCG
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Coding sequence (CDS) from alignment at chr4:1435673..1437442+

>NO04G05150.1 ID=NO04G05150.1|Name=NO04G05150.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr4:1435673..1437442+ (Nannochloropsis oceanica)
ATGCACAGGAGAAGAAGACAACAACCACGACACCGGCCCCTTATCCTCGC
ACTTGCTTCCTTTTCCTTCCTCATGGCAGCGATTATCATCAGTGCGCCAG
TCAGAGCCTTCGTGCCCATGCGTCTACCTTCTAGTCAGATGGTGTCCCGC
CTCCCTTCCTCCTCTCCATCATCTCGCTCAAAACGATCATCCTTATCGCC
CGCTTTCCCTTCTCGGACTTCTCCCCTCGAGGCCACTCTCCCCGATTTCG
ACTTGATTCAGAGCACCACCACCGGGGTCCTCTCCCTCCTCTCCTCCCCC
CCTTCCGTCCTCCTCGCTGGCCAAGATGGCGATTGGCTGGAGACCGCAGG
GACATACACGCTGAATTGGTTGAAGGAGGTGAATTACGGTGCAGTCTTTG
CCTCGTCCTTGTTTCCTTACTTGTGGTTTCTGAAGAATATCTGGGCTGAC
GACTTTCCCATACCAAAGACGATGAAATGGGGCTTTGCCTCCCTTTTGAT
TTTCGTCATCTCCACCATTATCGGAGGGATCGCGGCCAAGCTCATCTACG
ACGAGCTCCTGGCCAACATCGACTACATTCACGGCGTGGCTGAGTCCTTG
CTAGGCGTCACCAACATAGTTCTGGCCATCGCCGCGTTTCGAGCCTTGGA
AGCTGCCAAGAAAGACAGGGGTGGGGAGCGGCCGGAAAGATGGACGGAGG
ACGGTGGAGTGGATGTGTGA
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Synonyms
Publications