NO04G04950, NO04G04950 (gene) Nannochloropsis oceanica

Overview
NameNO04G04950
Unique NameNO04G04950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1730
Alignment locationchr4:1368523..1370252 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1368523..1370252 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G04950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04950.1NO04G04950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G04950.2NO04G04950.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579754gene_2287Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04950.1NO04G04950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G04950.2NO04G04950.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04950 ID=NO04G04950|Name=NO04G04950|organism=Nannochloropsis oceanica|type=gene|length=1730bp
TCCTTGGTTAATTTACAAACAATCCACGGTGCATGAGGCGAGAGAAAAGG
GAGAAAAGAGGAAAAAGGGAGGTTTTCTAGCACGGCTTTGCCTTAATTCC
GCTTGACTGCCGCAGATAGAGGTGGATCAGGATATTATAGATTACTCTCA
AGATCATATTGGTCAAGTGTATTTTGTGTTTCCTGTGCGCACGTGCAGTG
TATGTCCATTCATTATACCTCCACGACCAGTTTCACAAGGCTGAGACAGA
GGTTGCATCGCCGTCTTTTCTTCAAGGCCGTCTGTAACCACATGCACAAA
CATATTTAACAGGACAGAGGCCCACGTATGTCTTTGTCGTCGTCTTCATC
TGTTGATGTCATGGCTGCTGCAGCGGCCATTGGTGGTCCGCCGGCAAGTC
CAGCTCGAGAGCTTGCTCTCTTCGTCCTCGATCAAACCCTTCTCGGGCTC
CGAACTGCAGCCCAGGCGGTGGCCACGGTTGTGAAAGATCCTTACGTAGT
CTCCCTGCATAAGCGCATCCTTATCCCTATTCTCGGCCTCTCTCTCCTCT
TCTATCTCGGCACCATCGTGCCTTTGCGCCTAATTTTGTGGTTCACGGGC
TTGTCCTCACAGACGCCCCGCGTTCAGCAATGGTACTGGGTCATGAACAC
CACCATCCCCATCCTCATCAACATCATCCTCCGCTTCGTTTGGTACGCCC
CTCTCGACCGATGCTACCTCGCTGTGCTATCCTCGCTCGACGAGTCTCTG
ACGGCCGACCTGCGTAAGCGAGCCCCTCGTTCCGGTTGGGACATAGCCAA
GACCGAAGCAAAGCGTTGGATGAGCGTCGTCCTTTTCCTCCCAATCTATT
GGCTTCTGAGCTGGATTCCTTTGGTGGGCCGCGGGCTCAAGTTTATATTC
AAGgttcgtggggtggaggatggtggtcgatacaagaagaagtggggaag
agcaggggaaaggaagtaccgaacgtccttttttcactgatgccagaagc
gatagacttagagcttgagtgactgacatgtgtattcgctttgagacatt
gtgagagcacacattcgacaattcactgtccaaacccccactcaaaccac
agCTCTACACTCTCTCCCGCTACCTCTCCCCCTCGCATACTGTCGCCGCT
GCCGTCATCACCACCTTCCCCCTCACTGAATACCCCTCCACTCTCCTCCT
CTCCTTTCTTCTCTCCCTCACCGCCTCCTTGCAAGAACTCAATCTCCCCT
ACCTTGGGCGGCAGCAACCCCCCCTCTCCCGCCGCGCCGAGCTCGCCTTG
TTGGTGCGTGAAAATCCTCAGAAGGTCGCAGCGCTTGCCTTTGTGTTACC
ATTTACCCTTGTTTTGATGATTCCAATTTTGGGGCCCCTTAGCATCATAA
TTGCACATGCAGCGGCACCTGTGGCCTTAGTAAAGTTGGTGTTGCCACAG
AGGAAGAAGGAGGAGGGGGGAAGAGGTAAAGGGAATGCGAAAGAGGAGGT
AGAGGAGAAAAAGAAGGCAAAGTAGGGAGTGTACATAGCGAACCGTATAG
AAAGAGAAGTAAAGCAAGTTACATTGTGAAACAGAAGCCGAATACTCATT
CCATCCATTCACTTGTGATTCTAGTCGTGCATTTCCTCAAAACCGCTGTT
GGATGTAAAGTGGTTGTCCTTCCCCCCTCCCTCCTTCCCTCCTTCCCTCC
ATCCTTTTTGCTATCAAAACTTACCACTTT
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protein sequence of NO04G04950.1

>NO04G04950.1-protein ID=NO04G04950.1-protein|Name=NO04G04950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MSLSSSSSVDVMAAAAAIGGPPASPARELALFVLDQTLLGLRTAAQAVAT
VVKDPYVVSLHKRILIPILGLSLLFYLGTIVPLRLILWFTGLSSQTPRVQ
QWYWVMNTTIPILINIILRFVWYAPLDRCYLAVLSSLDESLTADLRKRAP
RSGWDIAKTEAKRWMSVVLFLPIYWLLSWIPLVGRGLKFIFKNSISPTLG
GSNPPSPAAPSSPCWCVKILRRSQRLPLCYHLPLF*
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protein sequence of NO04G04950.2

>NO04G04950.2-protein ID=NO04G04950.2-protein|Name=NO04G04950.2|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MSLSSSSSVDVMAAAAAIGGPPASPARELALFVLDQTLLGLRTAAQAVAT
VVKDPYVVSLHKRILIPILGLSLLFYLGTIVPLRLILWFTGLSSQTPRVQ
QWYWVMNTTIPILINIILRFVWYAPLDRCYLAVLSSLDESLTADLRKRAP
RSGWDIAKTEAKRWMSVVLFLPIYWLLSWIPLVGRGLKFIFKLYTLSRYL
SPSHTVAAAVITTFPLTEYPSTLLLSFLLSLTASLQELNLPYLGRQQPPL
SRRAELALLVRENPQKVAALAFVLPFTLVLMIPILGPLSIIIAHAAAPVA
LVKLVLPQRKKEEGGRGKGNAKEEVEEKKKAK*
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Synonyms
Publications