NO04G02130, NO04G02130 (gene) Nannochloropsis oceanica

Overview
NameNO04G02130
Unique NameNO04G02130
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3793
Alignment locationchr4:611924..615716 -

Link to JBrowse

Properties
Property NameValue
DescriptionPas-domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:611924..615716 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
IPR036638HLH_DNA-bd_sf
IPR011598bHLH_dom
Homology
[Close]
BLAST of NO04G02130 vs. NCBI_GenBank
Match: EWM28609.1 (pas-domain protein [Nannochloropsis gaditana])

HSP 1 Score: 372.1 bits (954), Expect = 4.200e-99
Identity = 186/222 (83.78%), Postives = 204/222 (91.89%), Query Frame = 0 
Query:  268 GGPRVRRKYLTNASREASELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPATKSSILSEGIQLIRSLLAQIGPEGKAPGAEPSQAEPYWLLFRKSATPLAMCRPDGNGRFLDCNTRFCEVFKCTAEELQKETPLSYTRDHDADNTQRVLSLVSQPGLLDESTPLEVVLTNKHHQRFLVRVSSLTDDYHKPRFLLFTPKAMLRGITGHDPSAIPSSN 490
            GG + R+  L +  R++SELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPP TKSSIL+EGIQLIRSLLAQ+GPEGKAPG EPSQAEPYWLLFRKSATPLAMCRPDG+GRFLDCNTRFCEVF CT EELQKETPLS+TR++DA+NTQRVL+LVSQPGLLDES+PLEVVLTNKH QRFLVRVSSL DDY KPRFLLFTPKAMLRG+ G +PS+ P S+
Sbjct:  178 GGAKGRK--LPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSS 397
[Close]
BLAST of NO04G02130 vs. NCBI_GenBank
Match: EWM28610.1 (pas-domain protein [Nannochloropsis gaditana])

HSP 1 Score: 372.1 bits (954), Expect = 4.200e-99
Identity = 186/222 (83.78%), Postives = 204/222 (91.89%), Query Frame = 0 
Query:  268 GGPRVRRKYLTNASREASELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPATKSSILSEGIQLIRSLLAQIGPEGKAPGAEPSQAEPYWLLFRKSATPLAMCRPDGNGRFLDCNTRFCEVFKCTAEELQKETPLSYTRDHDADNTQRVLSLVSQPGLLDESTPLEVVLTNKHHQRFLVRVSSLTDDYHKPRFLLFTPKAMLRGITGHDPSAIPSSN 490
            GG + R+  L +  R++SELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPP TKSSIL+EGIQLIRSLLAQ+GPEGKAPG EPSQAEPYWLLFRKSATPLAMCRPDG+GRFLDCNTRFCEVF CT EELQKETPLS+TR++DA+NTQRVL+LVSQPGLLDES+PLEVVLTNKH QRFLVRVSSL DDY KPRFLLFTPKAMLRG+ G +PS+ P S+
Sbjct:  167 GGAKGRK--LPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQVGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSS 386
[Close]
BLAST of NO04G02130 vs. NCBI_GenBank
Match: ALR84571.1 (bHLH transcription factor 2 [Nannochloropsis salina])

HSP 1 Score: 372.1 bits (954), Expect = 4.200e-99
Identity = 187/223 (83.86%), Postives = 204/223 (91.48%), Query Frame = 0 
Query:  267 GGGPRVRRKYLTNASREASELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPATKSSILSEGIQLIRSLLAQIGPEGKAPGAEPSQAEPYWLLFRKSATPLAMCRPDGNGRFLDCNTRFCEVFKCTAEELQKETPLSYTRDHDADNTQRVLSLVSQPGLLDESTPLEVVLTNKHHQRFLVRVSSLTDDYHKPRFLLFTPKAMLRGITGHDPSAIPSSN 490
            GGG   + + L +  R++SELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPP TKSSIL+EGIQLIRSLLAQIGPEGKAPG EPSQAEPYWLLFRKSATPLAMCRPDG+GRFLDCNTRFCEVF CT EELQKETPLS+TR++DA+NTQRVL+LVSQPGLLDES+PLEVVLTNKH QRFLVRVSSL DDY KPRFLLFTPKAMLRG+ G +PS+ P S+
Sbjct:  171 GGG---KGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQIGPEGKAPGTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSS 390
[Close]
BLAST of NO04G02130 vs. NCBI_GenBank
Match: AQX45500.1 (bHLH transcription factor [Aurantiochytrium sp.])

HSP 1 Score: 362.8 bits (930), Expect = 2.500e-96
Identity = 187/225 (83.11%), Postives = 204/225 (90.67%), Query Frame = 0 
Query:  267 GGGPRVRRKYLTNASREASELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPATKSSILSEGIQLIRSLLAQIGPEGKAPG-AEPSQAEPYWLLFRKSATPLAMCRPDGNGRFLDCNTRFCEVFKCTAE-ELQKETPLSYTRDHDADNTQRVLSLVSQPGLLDESTPLEVVLTNKHHQRFLVRVSSLTDDYHKPRFLLFTPKAMLRGITGHDPSAIPSSN 490
            GGG   + + L +  R++SELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPP TKSSIL+EGIQLIRSLLAQIGPEGKAPG  EPSQAEPYWLLFRKSATPLAMCRPDG+GRFLDCNTRFCEVF CT E ELQKETPLS+TR++DA+NTQRVL+LVSQPGLLDES+PLEVVLTNKH QRFLVRVSSL DDY KPRFLLFTPKAMLRG+ G +PS+ P S+
Sbjct:  152 GGG---KGRKLPSNGRDSSELEKRLKKNAREQKRANKINDQIAIMKTILESVGLRPPPTKSSILAEGIQLIRSLLAQIGPEGKAPGKTEPSQAEPYWLLFRKSATPLAMCRPDGHGRFLDCNTRFCEVFGCTPEAELQKETPLSFTREYDAENTQRVLALVSQPGLLDESSPLEVVLTNKHQQRFLVRVSSLLDDYQKPRFLLFTPKAMLRGVNGQEPSSAPPSS 373
The following BLAST results are available for this feature:
BLAST of NO04G02130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM28609.14.200e-9983.78pas-domain protein [Nannochloropsis gaditana][more]
EWM28610.14.200e-9983.78pas-domain protein [Nannochloropsis gaditana][more]
ALR84571.14.200e-9983.86bHLH transcription factor 2 [Nannochloropsis salin... [more]
AQX45500.12.500e-9683.11bHLH transcription factor [Aurantiochytrium sp.][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009587NSK009587Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02130.2NO04G02130.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G02130.1NO04G02130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100009g104gene1971Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02130.2NO04G02130.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G02130.1NO04G02130.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02130 ID=NO04G02130|Name=NO04G02130|organism=Nannochloropsis oceanica|type=gene|length=3793bp
ACAGACACACACATTGAAATCGGACGACCAGGAGGCGCGTATTATACGCG
TGGACTTGTTTTCGAAAACAAGGAAGCCCAGCAGCCGCAGCAGCTGCACA
CCACCCCAGAGCACCGGGTGCTACGACGACGACAACAACGACAACGACGG
TACCAGCGATTAGCCGACGCAGTACCAGACAGCAGCAGCAGCAGCAGGCA
GAAGAAGAAGGAACGGCAGCAACCACAGGAGGCACGGGCAGCAGGGGCAG
CAGCCTCGAATACCCAAACCTGACCATGGACGCGGAAATCGTAAGTGATC
CGCATGCCTGCCTGACCATATGTTGCGTGTGTGTAGCAGCAGCAACAACA
TCCTTGCCCCCCCGGACAAACATCTAACATTCTTTCTTTTACTGATCCAC
ACGTATCCAGGCCCGGTCCTATGCTGGCCAGCCCCCCGGCGTGCCTGGTA
ATCACATGgtaagtgcatatggttagtggttcgccttgggaagatggtga
aagaggggaggaaaaggagaggaagggcgttttttttctttcacagttta
tgtgagttagtaaatttacatctgttgacacaaacgcaaccttcaaactt
aaacaaaaacagCAGCCCCAGCCTCAAGGCGGGGGGTGGGCATCGTCAAA
CCAAATGGTACGTGTATCATGTTTTAATTATTCATCGTTTAGTCGTGTTC
ATGGCATAAGAAGATTGAAACAGATAAAGTTTGCCATTCCTTTCCTTAAG
TTGTTAGTCGTCCCAATCCCCTTGGTTCAAATAAGACACATTTTGATCTC
ATCTCCCCTCCCTCCCTCCCTTCTTCTTTCCACACAGTATCCTTCTGGTC
CCTCTGGACCCCCTCCTCCCTCCGGCCCTCTTCCTCCTCCTCCTCCTCAT
TCCGTTGGCCCCTATTACTACCCAACGGCTCCCCTTCCCGGCAACAACCC
CACTGCTCCTGCTGCTGCTACTGCTCAGCAGTACGCACAGCAGCAGCAAG
GAGTAGGACCGCAGTGGGCGAATGGTGGTGGGGGAGGAAATGGCGCTCCA
GGAGGAGCAGTAGGAGGAGGAGCAGGCGGGGGGGGGTTAAGAGGGGGAAG
GAATGGAGTTGGATCTGCCGCAAGTGGAGGGGTAGGTGGGGACGGATTGA
GGGGAGGAAGCGCACCACAGCATCATCAGCAGCAGCAGCAGCATCAGCAT
CAGCAGCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCATCAGCAGCAGCAGCAGGCTGTTGGGTATTGGCCAGGGC
CTGCGGGTCCTGGTATGGTGTATGGAGGAGGTGGGGGAGGAAGCGGGGGA
GGAGGGAATGGGAGTGACAGTGACAGCTCGGACGACGGGAGCTTGGTGCG
TACCGCCGGGGGGGGACCCAGGGTGAGGAGAAAATACCTGACGAATGCAT
CGAGGGAGGCATCGGAGTTGGAAAAACGGCTCAAGAAGAACGCGCGGGAG
CAGAAGAGGGCGAATAAGATCAACGACCAGATAGCGATTATGAAAACCAT
TCTCGAGTCCGTTGGCCTCCGTCCTCCCGCCACCAAGAGCTCCATTCTCT
CCGAGGGTATCCAGCTTATCCGGAGCTTGCTTGCTCAAATCGGACCGGAG
GGGAAAGCCCCAGGGGCGGAACCCAGCCAAGCCGAGCCCTATTGGTTGTT
GTTCCGTAAGTCGGCGACGCCGTTGGCCATGTGCCGTCCGGATGGAAACG
GGCGTTTTCTGGACTGTAACACGCGATTTTGTGAGGTGTTTAAGTGCACG
GCGGAGGAGCTGCAGAAAGAGACGCCCTTGAGCTATACTCGTGACCATGA
TGCGGATAACACACAGCGGGTGCTTTCGCTCGTGTCGCAGCCGGGGTTGC
TCGACGAGAGCACGCCGTTGGAGGTGGTATTGACGAACAAGCACCACCAA
CGGTTCCTGGTTCGCGTCTCGAGTCTCACTGACGACTATCATAAGCCGCG
CTTCCTGCTTTTCACGCCCAAGGCCATGCTCAGAGGAATCACCGGCCACG
ATCCATCCGCCATCCCATCCTCTAACTCCTCCTCGTCTGTGGGCTCAGCC
TCCGCCCACCCGCACCCCCATCACTCACAACCCCCTCCCCACCCGCATCA
CCAGCAAGCTCCTCCCCACCAGCAATCCCAGCAGCACGCGGTCGGCCTTT
CTGGGCCCGTCGCCCCCTCCCTCCTTCCTTCCTCCTCATCTTACCCCCCT
CCCACCGTCTCCGCACTTCCCCTTCGCGCTGAGCACTCCGTTGCCCCTCC
CCTGCTCCCCCTCCCGTCAAACCACCACATCCATCCCTCCTCCTACCCAC
AACAACATCAGCATCAGCATCTTCATCATCATCAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACACCAACAACAACAACAACA
ACAACAACAACAACAACAACAACCACATCAACAACAACAACCACAACCAC
GACAACAACAACAACAACAACAACAACAACAACCACAACAACAACAACAA
CCACCACCACCACCACCACCACAACAACAACAACTACTACAACAATTGGC
ACACAAATCAGAAACTTCCTCCCCTCCCAGCCAGCAATTCCAGCGAGCTC
AGCAGCAGCAACAGCAGCAGTCGCTTGAGCAAGACGCTGCCCCTTCATCC
CTCCCTCCTCCTCCGCCTCCAGGCCGCGAGAAAAGCTTCAACTTGTCGTG
TCCGGTAAAAGACTCTCTTAGCCCTGCCACCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCGGTCTCAGGCGCTGCTTCTTCGTCTGCTGGTCCGGCC
GAGCCGTCCTTAGAATCGGGACGGAAAGCACAGGAGATGAGTTCGTGAGA
CGAGGGAGGGATAGGGGAAAGGAGAAGGAGAAGGTATCAGCATGGTTATA
CGGGATAGTGTGTATTTTGCGTTTTAAAGAGTGTACCTGTAAGACGGTAG
AGGATAACGGGCGAAGGAAAGAAAGAAAGGAGGGAGGCGAGGGGAAGAGA
TGGAGGGGGATCTTTGTTACATGAAGGTTTTGACCTGAAAAAGATGAAGA
TTTTGAGGATGAGGACAAGGACATGAACGAGAGTAATCAACACTGAATAA
GATGTCACGAAATTTAGGATGAAGAAGGGGGAGGAGAAACTTTAGAAAGC
AATTTATGACCAAGACAAGTTTTTGTGTGTATTGTGATGAGATGTGGTAG
CAGATTGAGGGAGAGCAGAGGGGGAAAGGGGGAAGAGGAAGAGTAAAGAA
TATCGAGATGAAGATGGAGAAATGAGAAGCGGAAGATGAAAAGAAGTGAA
ACATGAAAGACCATAAACATAAGTCAAATGAATGCTTGCTCGCGCCCCAA
GCGTTTGCATCTTTATGTGTGTCACTACGAGAAATGGTGGCATCTGAAGA
ATGTCATGAGCATCCGTTTCTGTCCTTCGATGTCGATGTTCCATCTTTCT
CGTTCTCATTATTTTGTGAGTCATCGCCTATATTCTCCTTACATTTATAT
GACGCACTGCGTACTGTCCGTTGCTTTTCCTGAGTGCATCTACTTTAAGA
GCTGGTGCCCTTTTGGGGGGTCAGGAAGGAACGTCGGCGATTGATACCGG
CCACGCGCCTCTTCTCTTCATAAAACCATGTTCTGACCGTGTCCGTCCGG
GCAGGTGAGGCTGGCTCTGCACAGCCGGGCAAATTTTCTAATCATCGGAC
ATGCCCTCCAGGAATCCTGTCGTTATCGTTACCTCCTCCTCCT
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protein sequence of NO04G02130.2

>NO04G02130.2-protein ID=NO04G02130.2-protein|Name=NO04G02130.2|organism=Nannochloropsis oceanica|type=polypeptide|length=763bp
MQPQPQGGGWASSNQMVRVSCFNYSSFSRVHGIRRLKQIKFAIPFLKLLV
VPIPLVQIRHILISSPLPPSLLLSTQYPSGPSGPPPPSGPLPPPPPHSVG
PYYYPTAPLPGNNPTAPAAATAQQYAQQQQGVGPQWANGGGGGNGAPGGA
VGGGAGGGGLRGGRNGVGSAASGGVGGDGLRGGSAPQHHQQQQQHQHQQQ
QHQQQQQQQQQQQQQQQHQQQQQAVGYWPGPAGPGMVYGGGGGGSGGGGN
GSDSDSSDDGSLVRTAGGGPRVRRKYLTNASREASELEKRLKKNAREQKR
ANKINDQIAIMKTILESVGLRPPATKSSILSEGIQLIRSLLAQIGPEGKA
PGAEPSQAEPYWLLFRKSATPLAMCRPDGNGRFLDCNTRFCEVFKCTAEE
LQKETPLSYTRDHDADNTQRVLSLVSQPGLLDESTPLEVVLTNKHHQRFL
VRVSSLTDDYHKPRFLLFTPKAMLRGITGHDPSAIPSSNSSSSVGSASAH
PHPHHSQPPPHPHHQQAPPHQQSQQHAVGLSGPVAPSLLPSSSSYPPPTV
SALPLRAEHSVAPPLLPLPSNHHIHPSSYPQQHQHQHLHHHQQQQQQQQQ
QQQQQQQHQQQQQQQQQQQQQPHQQQQPQPRQQQQQQQQQQPQQQQQPPP
PPPPQQQQLLQQLAHKSETSSPPSQQFQRAQQQQQQQSLEQDAAPSSLPP
PPPPGREKSFNLSCPVKDSLSPATSSSSSSSSSSSVSGAASSSAGPAEPS
LESGRKAQEMSS*
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protein sequence of NO04G02130.1

>NO04G02130.1-protein ID=NO04G02130.1-protein|Name=NO04G02130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=723bp
MDAEIARSYAGQPPGVPGNHMQPQPQGGGWASSNQMYPSGPSGPPPPSGP
LPPPPPHSVGPYYYPTAPLPGNNPTAPAAATAQQYAQQQQGVGPQWANGG
GGGNGAPGGAVGGGAGGGGLRGGRNGVGSAASGGVGGDGLRGGSAPQHHQ
QQQQHQHQQQQHQQQQQQQQQQQQQQQHQQQQQAVGYWPGPAGPGMVYGG
GGGGSGGGGNGSDSDSSDDGSLVRTAGGGPRVRRKYLTNASREASELEKR
LKKNAREQKRANKINDQIAIMKTILESVGLRPPATKSSILSEGIQLIRSL
LAQIGPEGKAPGAEPSQAEPYWLLFRKSATPLAMCRPDGNGRFLDCNTRF
CEVFKCTAEELQKETPLSYTRDHDADNTQRVLSLVSQPGLLDESTPLEVV
LTNKHHQRFLVRVSSLTDDYHKPRFLLFTPKAMLRGITGHDPSAIPSSNS
SSSVGSASAHPHPHHSQPPPHPHHQQAPPHQQSQQHAVGLSGPVAPSLLP
SSSSYPPPTVSALPLRAEHSVAPPLLPLPSNHHIHPSSYPQQHQHQHLHH
HQQQQQQQQQQQQQQQQHQQQQQQQQQQQQQPHQQQQPQPRQQQQQQQQQ
QPQQQQQPPPPPPPQQQQLLQQLAHKSETSSPPSQQFQRAQQQQQQQSLE
QDAAPSSLPPPPPPGREKSFNLSCPVKDSLSPATSSSSSSSSSSSVSGAA
SSSAGPAEPSLESGRKAQEMSS*
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Synonyms
Publications