NSK009587, NSK009587 (gene) Nannochloropsis salina | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NSK009587
Unique Name	NSK009587
Type	gene
Organism	Nannochloropsis salina (N. salina CCMP1776)
Alignment location	scaffold7:701512..704394 +

Properties

Mutants

The following records are associated with this feature:


Title	Method	Accession date	Last modified date
Transcriptional factor-basic helix loop helix 2	Overexpression	2019-05-10	2020-04-01

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold7	supercontig	scaffold7:701512..704394 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
RNA-seq profiling for N. salina CCMP1776 under high salt and nitrogen limitation	2019-10-29
RNA_seq analysis for N. salina CCMP1776 v2 under N starvation	2019-10-10
GO annotation for N. salina CCMP1776 v2	2019-10-09
Gene prediction for N. salina CCMP1776 (version 2)	2019-10-08

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity
GO:0003674	molecular_function

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsR079	nonsR079	Nannochloropsis salina (N. salina CCMP1776)	syntenic_region

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
NO04G02130	NO04G02130	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NSK009587t	NSK009587t	Nannochloropsis salina (N. salina CCMP1776)	mRNA

Sequences

The following sequences are available for this feature:

Synonyms

Publications


Year	Publication
2015	Kang NK, Jeon S, Kwon S, Koh HG, Shin SE, Lee B, Choi GG, Yang JW, Jeong BR, Chang YK. Effects of overexpression of a bHLH transcription factor on biomass and lipid production in Nannochloropsis salina. Biotechnology for biofuels. 2015; 8:200.