NO04G00110, NO04G00110 (gene) Nannochloropsis oceanica

Overview
NameNO04G00110
Unique NameNO04G00110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1917
Alignment locationchr4:54588..56504 -

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Properties
Property NameValue
DescriptionTranslation initiation factor if-3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:54588..56504 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0003743translation initiation factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR036788T_IF-3_C_sf
IPR036787T_IF-3_N_sf
IPR001288Translation_initiation_fac_3
IPR019814Translation_initiation_fac_3_N
IPR019815Translation_initiation_fac_3_C
Homology
BLAST of NO04G00110 vs. NCBI_GenBank
Match: EWM28407.1 (translation initiation factor if-3 [Nannochloropsis gaditana])

HSP 1 Score: 188.0 bits (476), Expect = 4.300e-44
Identity = 99/158 (62.66%), Postives = 124/158 (78.48%), Query Frame = 0
Query:   88 KESAFVINEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQMNLRPQRLLELRNFILDDYFDNKYKVRVD 246
            K+   V+N+AI+A TVRLV K + + GP +S+++SR EALAKA+  GLDLVLVT AS+PWVCKL +A+RE+YQR KKE   K   + LKEISIRGNISDHDLLIKLRRV  FFE G+SVR+II+PTG Q++LRP RL E+ +FIL DY  +KYK  V+
Sbjct:   94 KKGDLVVNKAIQAGTVRLVVKND-AGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKSFVE 250          
BLAST of NO04G00110 vs. NCBI_GenBank
Match: XP_005854203.1 (translation initiation factor if-3 [Nannochloropsis gaditana CCMP526] >EKU22157.1 translation initiation factor if-3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 179.5 bits (454), Expect = 1.500e-41
Identity = 95/158 (60.13%), Postives = 119/158 (75.32%), Query Frame = 0
Query:   88 KESAFVINEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQMNLRPQRLLELRNFILDDYFDNKYKVRVD 246
            K+   V+N+AI+A T         + GP +S+++SR EALAKA+  GLDLVLVT AS+PWVCKL +A+RE+YQR KKE   K   + LKEISIRGNISDHDLLIKLRRV  FFE G+SVR+II+PTG Q++LRP RL E+ +FIL DY  +KYK+R D
Sbjct:   94 KKGDLVVNKAIQAGT-------NDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKLRGD 244          
BLAST of NO04G00110 vs. NCBI_GenBank
Match: WP_081895123.1 (translation initiation factor IF-3 [Mesoaciditoga lauensis])

HSP 1 Score: 92.8 bits (229), Expect = 1.900e-15
Identity = 54/130 (41.54%), Postives = 78/130 (60.00%), Query Frame = 0
Query:   88 KESAFVINEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQM 218
            K++  + NE I++ TVRL+  E    G     +VS++EAL KAKE GLDLVLV+  S P VCK+M+  R  Y++ KK+   K S + LK++  R  I +HD   KL  V  F + G+ VR+ I+  G +M
Sbjct:   14 KKTGPLKNEEIRSSTVRLIGPEGSQFG-----IVSKEEALRKAKEYGLDLVLVSPNSRPPVCKIMDFGRYMYEQSKKQKKNKVSGSVLKQMKFRPKIDEHDYQTKLSHVKRFLQSGNKVRITIMFRGREM 138          
BLAST of NO04G00110 vs. NCBI_GenBank
Match: WP_081944128.1 (translation initiation factor IF-3 [Tissierellia bacterium S5-A11])

HSP 1 Score: 92.8 bits (229), Expect = 1.900e-15
Identity = 54/127 (42.52%), Postives = 77/127 (60.63%), Query Frame = 0
Query:   94 INEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSN--TLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQMN 219
            INE I+AR VRLV ++    G     V+S++EALA A+E GLDLV V     P VC+LMN  +  Y++QK+E   +K     TLKE+ +R NI DHD  +K++    F E G  V+V I+  G +++
Sbjct:    7 INEQIRAREVRLVSEDNEQLG-----VMSQREALAMAEEHGLDLVEVAPQGRPPVCRLMNYGKYRYEQQKREKEARKKQKVITLKEVKLRPNIEDHDFYVKMKNAIRFLEDGSKVKVTIMFRGRELS 128          
BLAST of NO04G00110 vs. NCBI_GenBank
Match: WP_072395347.1 (translation initiation factor IF-3 [Hyphomicrobium sp. CS1GBMeth3])

HSP 1 Score: 92.0 bits (227), Expect = 3.200e-15
Identity = 54/126 (42.86%), Postives = 80/126 (63.49%), Query Frame = 0
Query:   94 INEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSNT--LKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQM 218
            IN+AI+AR VRL+ +   + G     VVS+ +ALA+A+E GLDLV V+  +EP VCK+++  + +YQ QKK    +K   T  +KEI +R  I DHD  +K+R +  FFE+G  V+V +   G +M
Sbjct:   14 INDAIRAREVRLIDENGQNVG-----VVSKLDALARAEEAGLDLVEVSPDAEPPVCKILDFGKYKYQEQKKAAEARKHQKTVEIKEIKMRPGIDDHDYDVKMRAIKRFFEEGDKVKVTLRFRGREM 134          
BLAST of NO04G00110 vs. NCBI_GenBank
Match: WP_023786032.1 (translation initiation factor IF-3 [Hyphomicrobium nitrativorans] >AHB47620.1 translation initiation factor IF-3 [Hyphomicrobium nitrativorans NL23])

HSP 1 Score: 89.7 bits (221), Expect = 1.600e-14
Identity = 53/126 (42.06%), Postives = 80/126 (63.49%), Query Frame = 0
Query:   94 INEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSNT--LKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQM 218
            IN+AI+AR VRL+ +   + G     VVS+ +ALA+A+E GLDLV ++  +EP VCK+++  + +YQ QKK    +K   T  +KEI +R  I DHD  +K+R +  FFE+G  V+V +   G +M
Sbjct:   14 INDAIRARDVRLIDETGQNVG-----VVSKIDALARAEEAGLDLVEISPDAEPPVCKILDYGKFKYQEQKKAAEARKHQKTVEIKEIKMRPGIDDHDYDVKMRAMKRFFEEGDKVKVTLRFRGREM 134          
BLAST of NO04G00110 vs. NCBI_GenBank
Match: WP_075939452.1 (translation initiation factor IF-3 [Negativicoccus massiliensis])

HSP 1 Score: 89.0 bits (219), Expect = 2.700e-14
Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 0
Query:   94 INEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSN--TLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQMN 219
            INE I+AR VRLV ++    G     V+S++EALA A+E GLDLV V     P VC+LMN  +  Y++QK+E   +K     TLKE+ +R NI DHD  +K++    F E    V+V I+  G +++
Sbjct:    3 INEQIRAREVRLVSEDNEQLG-----VMSQREALAIAEEHGLDLVEVAPQGRPPVCRLMNYGKYRYEQQKREKEARKKQKVITLKEVKLRPNIEDHDFYVKMKNAIRFLEDESKVKVTIMFRGRELS 124          
BLAST of NO04G00110 vs. NCBI_GenBank
Match: PMP70994.1 (translation initiation factor IF-3 [Mesoaciditoga sp.] >PMP80357.1 translation initiation factor IF-3 [Mesoaciditoga sp.])

HSP 1 Score: 89.0 bits (219), Expect = 2.700e-14
Identity = 51/129 (39.53%), Postives = 76/129 (58.91%), Query Frame = 0
Query:   89 ESAFVINEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQM 218
            +S F+ NE I   TVRL+  +    G     +V R EAL KA+E G+DLVLV+++S P VCK+M+  +  Y++ KK+   +  S+ LK++  R  I +HD   KL  V  F E G+ VR+ I+  G +M
Sbjct:    5 KSEFLKNEEIHYPTVRLIGPDGAQLG-----IVKRSEALQKAEEYGMDLVLVSSSSNPPVCKIMDFGKYIYEQNKKQKKSRNVSDVLKQMKFRPKIDEHDYQTKLSHVRNFIENGNKVRITIMFRGREM 128          
BLAST of NO04G00110 vs. NCBI_GenBank
Match: WP_020083991.1 (translation initiation factor IF-3 [Hyphomicrobium zavarzinii])

HSP 1 Score: 86.3 bits (212), Expect = 1.700e-13
Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 0
Query:   94 INEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSN--TLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQM 218
            IN+AI+AR VRL+ +   + G     VVS+ +A+A+A+  GLDLV V+  +EP VCK+++  + +YQ QKK    +K      +KEI +R  I DHD  +K+R +  FFE+G  V+V +   G +M
Sbjct:   14 INDAIRAREVRLIDETGQNVG-----VVSKVDAIARAEAAGLDLVEVSPDAEPPVCKILDFGKYKYQEQKKAAEARKHQKIVEIKEIKMRPGIDDHDYDVKMRAIKRFFEEGDKVKVTLRFRGREM 134          
BLAST of NO04G00110 vs. NCBI_GenBank
Match: WP_046847358.1 (translation initiation factor IF-3 [Hyphomicrobium sp. GJ21] >CEJ86969.1 Translation initiation factor IF-3 [Hyphomicrobium sp. GJ21])

HSP 1 Score: 85.9 bits (211), Expect = 2.300e-13
Identity = 49/126 (38.89%), Postives = 80/126 (63.49%), Query Frame = 0
Query:   94 INEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSN--TLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQM 218
            IN+ I+AR VRL+ +   + G     V+++ +ALA+A++VGLDLV ++  +EP VCK+++  + ++Q QKK    +K+     LKEI +R  I DHD  +KLR +  FFE+G  V++ +   G +M
Sbjct:   15 INDQIRAREVRLIDENGQNIG-----VIAKFDALARAEDVGLDLVEISPDAEPPVCKILDFGKFKFQEQKKAAEARKNQKIVELKEIKMRPGIDDHDYDVKLRAIKRFFEEGDKVKITLRFRGREM 135          
The following BLAST results are available for this feature:
BLAST of NO04G00110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28407.14.300e-4462.66translation initiation factor if-3 [Nannochloropsi... [more]
XP_005854203.11.500e-4160.13translation initiation factor if-3 [Nannochloropsi... [more]
WP_081895123.11.900e-1541.54translation initiation factor IF-3 [Mesoaciditoga ... [more]
WP_081944128.11.900e-1542.52translation initiation factor IF-3 [Tissierellia b... [more]
WP_072395347.13.200e-1542.86translation initiation factor IF-3 [Hyphomicrobium... [more]
WP_023786032.11.600e-1442.06translation initiation factor IF-3 [Hyphomicrobium... [more]
WP_075939452.12.700e-1441.73translation initiation factor IF-3 [Negativicoccus... [more]
PMP70994.12.700e-1439.53translation initiation factor IF-3 [Mesoaciditoga ... [more]
WP_020083991.11.700e-1340.48translation initiation factor IF-3 [Hyphomicrobium... [more]
WP_046847358.12.300e-1338.89translation initiation factor IF-3 [Hyphomicrobium... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR085ncniR085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004964NSK004964Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00110.2NO04G00110.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G00110.1NO04G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612087gene_10663Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100088g13gene2166Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00110.2NO04G00110.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G00110.1NO04G00110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00110 ID=NO04G00110|Name=NO04G00110|organism=Nannochloropsis oceanica|type=gene|length=1917bp
AGATCTCTGGCTGAGCCCTGCTCAAGGACAGTGCGCTCCTCCCCGTCACA
AGCATCCCCATCATCGCCTCCCCACTCTCACTCTACAATGCTGCCTCGAG
TGAGCCGTCTCGCCGTCCTCCTCCCTACAGCCATTACACACACCACCGTC
TGCAAAAAAATATGTGCCGTCACAAGCTCAAGAAGGAGGCCAAGGCAAGA
CAACCCTCCCCTCCTGCCGCAGTCGCTCTCCGGACTTGGTGGGGGTGGTG
GGAGGAGCATCAGCACAACCCTTCCGACCGCCGCCCCGGCGCCCAAGCGA
GCCGGTGGCGGTGGTGGCCCTAGAGGGAAAAGCCCGAACAATCTGGCTAA
AGAGAGgtaggtgcagggcgaaagacagtatgggtgagcaagtggtagga
gtagcgtgatgctcctctttccctctctccccctctcaccccgccccttc
cgccctcccttctctcagTGCCTTTGTGATCAACGAGGCCATCAAAGCGC
GTACCGTCCGTCTGGTATTTAAAGAAGAAGGGTCGAGTGGGCCGCCCACC
TCTACCGTTGTCTCTCGACAGGAGGCATTGGCGAAGGCGAAGGAGGTGGG
GCTAGACCTGGTGTTGGgtaaggattggatggaaagagagctgggaaaac
gggagagacagaaaagatgaagaagttctagcccattttcactttttttt
tcatccgttataatattcagcagccgcacctttcactatgcgctaattct
cctctcccaactttcccccctgtccacgctggcagTTACCACGGCCTCGG
AGCCCTGGGTTTGCAAGCTCATGAACGCCCGTCGTGAAGAGTACCAGCGG
CAGAAGAAGGAGAGACGGATGAAGAAGAGCAGCAACACTTTGAAGGAGAT
CAGCATCAGGgtagggaggcagggagggaggaatagagagatgtgaaagc
aagcacgaaggcgaccctgccgtgtcaacgcgcgaaattggccctcaccg
accacaatatctctcccttcctcttccgacatctttcagGGAAACATCTC
GGACCACGATTTGCTGATCAAACTGAGGCGTGTCGACGAGTTCTTCGAGC
AAGGCCACAGCGTCCGGGTCATCATCCTTCCCACTGGCAGCCAGgtatgg
gcggcttcttctcccctcgtccttattccgtattcctgtcgttgatatgc
ctctgttgcgtcgggtggtcgtaggagctgtctttgccataatttgtcgc
aagacgtttgtcgtccgctcacatgccaatatcgtcctccgtccttccct
tcttttctccctttctcccccccccgccccccacttccaccaattcactc
tagATGAATCTCCGCCCCCAGCGCTTGCTCGAGCTTCGAAACTTCATCTT
GGACGATTACTTTGACAACAAGTATAAGgtcagggtagacagatggggag
ggggggagggaggggaagggcgtggaggagagaggacgttgaacgcgcga
cgtgctaaaggtaggatgagcgagggggatcgcaagatagtgatagaaaa
agagaataggatcaatgatccaggaatataatgaagcgcaatcagtattc
actcggtatttccttcgtccctccgctccctttctcctgtcacagAGCGT
GGTCGAGATCCAACCCCCGACCCCGACCTCGGTAAGGAGAGAGATTATCC
TGCACCCCAAGCGCCATCCGTCACCCCCACCAGCGGGGGGAGACGTGCCC
AAACAGATACGAATGAAGTCAATGCCGGAAGAGCTGGGGGAAGAGGAGCG
GGAGGCGACGACAACCACATAGAGATAGGAGGATGTTGACGTGGTGAACG
GTAGCTAGTAACGGAGAGAGGGGAGAGGGGGCCCGCGGGCGAAAGCAAAG
GAAGTGACTGTAAGCAA
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protein sequence of NO04G00110.2

>NO04G00110.2-protein ID=NO04G00110.2-protein|Name=NO04G00110.2|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MLPRVSRLAVLLPTAITHTTVCKKICAVTSSRRRPRQDNPPLLPQSLSGL
GGGGGRSISTTLPTAAPAPKRAGGGGGPRGKSPNNLAKESAFVINEAIKA
RTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCK
LMNARREEYQRQKKERRMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFF
EQGHSVRVIILPTGSQMNLRPQRLLELRNFILDDYFDNKYKVRVDRWGGG
EGGEGRGGERTLNARRAKGRMSEGDRKIVIEKENRINDPGI*
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protein sequence of NO04G00110.1

>NO04G00110.1-protein ID=NO04G00110.1-protein|Name=NO04G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MLPRVSRLAVLLPTAITHTTVCKKICAVTSSRRRPRQDNPPLLPQSLSGL
GGGGGRSISTTLPTAAPAPKRAGGGGGPRGKSPNNLAKESAFVINEAIKA
RTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCK
LMNARREEYQRQKKERRMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFF
EQGHSVRVIILPTGSQMNLRPQRLLELRNFILDDYFDNKYKSVVEIQPPT
PTSVRREIILHPKRHPSPPPAGGDVPKQIRMKSMPEELGEEEREATTTT*
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Synonyms
Publications