NO04G00110.1, NO04G00110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00110.1
Unique NameNO04G00110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1082
Alignment locationchr4:54588..56504 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:54588..56504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00110.1 vs.
Match: EWM28407.1 (translation initiation factor if-3 [Nannochloropsis gaditana])

HSP 1 Score: 224.6 bits (571), Expect = 4.200e-55
Identity = 145/285 (50.88%), Postives = 185/285 (64.91%), Query Frame = 0 
Query:    1 MLPRVSRLAVLLPT--------AITHTTVCKKICA----VTSSRRRPRQDNPPLLPQSLSGLGGGGGRSISTTLPTAAPAPKRAGGGGGPRGKSPNNLAKESAFVINEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKERRMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQMNLRPQRLLELRNFILDDYFDNKYKSVVEIQPPTPTSVRREIILHPKRHPSPPPAGG 274
            MLP + R+   LPT        ++  T     I      VT  R RP+   PPL P ++SG    G  +   TLP    A   A G G     S     K+   V+N+AI+A TVRLV K + + GP +S+++SR EALAKA+  GLDLVLVT AS+PWVCKL +A+RE+YQR KKE++ K   + LKEISIRGNISDHDLLIKLRRV  FFE G+SVR+II+PTG Q++LRP RL E+ +FIL DY  +KYKS VEI+ P+P S+RRE+I+HPKR+ S    GG
Sbjct:    1 MLPLIQRMGPFLPTITKDMCKVSLRSTREIHAIAITGAMVTRRRTRPQPSLPPL-PFAVSGASCRGAMA---TLPAGRAASTNASGSGD--NISTIIPPKKGDLVVNKAIQAGTVRLVVKND-AGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKSFVEIK-PSPGSLRREMIVHPKRNASGGGGGG 277
The following BLAST results are available for this feature:
BLAST of NO04G00110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28407.14.200e-5550.88translation initiation factor if-3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00110NO04G00110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00110.1NO04G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00110.1.cds1NO04G00110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00110.1.cds2NO04G00110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00110.1.cds3NO04G00110.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00110.1.cds4NO04G00110.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00110.1.cds5NO04G00110.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00110.1.cds6NO04G00110.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00110.1 ID=NO04G00110.1|Name=NO04G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1082bp
AGATCTCTGGCTGAGCCCTGCTCAAGGACAGTGCGCTCCTCCCCGTCACA
AGCATCCCCATCATCGCCTCCCCACTCTCACTCTACAATGCTGCCTCGAG
TGAGCCGTCTCGCCGTCCTCCTCCCTACAGCCATTACACACACCACCGTC
TGCAAAAAAATATGTGCCGTCACAAGCTCAAGAAGGAGGCCAAGGCAAGA
CAACCCTCCCCTCCTGCCGCAGTCGCTCTCCGGACTTGGTGGGGGTGGTG
GGAGGAGCATCAGCACAACCCTTCCGACCGCCGCCCCGGCGCCCAAGCGA
GCCGGTGGCGGTGGTGGCCCTAGAGGGAAAAGCCCGAACAATCTGGCTAA
AGAGAGTGCCTTTGTGATCAACGAGGCCATCAAAGCGCGTACCGTCCGTC
TGGTATTTAAAGAAGAAGGGTCGAGTGGGCCGCCCACCTCTACCGTTGTC
TCTCGACAGGAGGCATTGGCGAAGGCGAAGGAGGTGGGGCTAGACCTGGT
GTTGGTTACCACGGCCTCGGAGCCCTGGGTTTGCAAGCTCATGAACGCCC
GTCGTGAAGAGTACCAGCGGCAGAAGAAGGAGAGACGGATGAAGAAGAGC
AGCAACACTTTGAAGGAGATCAGCATCAGGGGAAACATCTCGGACCACGA
TTTGCTGATCAAACTGAGGCGTGTCGACGAGTTCTTCGAGCAAGGCCACA
GCGTCCGGGTCATCATCCTTCCCACTGGCAGCCAGATGAATCTCCGCCCC
CAGCGCTTGCTCGAGCTTCGAAACTTCATCTTGGACGATTACTTTGACAA
CAAGTATAAGAGCGTGGTCGAGATCCAACCCCCGACCCCGACCTCGGTAA
GGAGAGAGATTATCCTGCACCCCAAGCGCCATCCGTCACCCCCACCAGCG
GGGGGAGACGTGCCCAAACAGATACGAATGAAGTCAATGCCGGAAGAGCT
GGGGGAAGAGGAGCGGGAGGCGACGACAACCACATAGAGATAGGAGGATG
TTGACGTGGTGAACGGTAGCTAGTAACGGAGAGAGGGGAGAGGGGGCCCG
CGGGCGAAAGCAAAGGAAGTGACTGTAAGCAA
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protein sequence of NO04G00110.1

>NO04G00110.1-protein ID=NO04G00110.1-protein|Name=NO04G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MLPRVSRLAVLLPTAITHTTVCKKICAVTSSRRRPRQDNPPLLPQSLSGL
GGGGGRSISTTLPTAAPAPKRAGGGGGPRGKSPNNLAKESAFVINEAIKA
RTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCK
LMNARREEYQRQKKERRMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFF
EQGHSVRVIILPTGSQMNLRPQRLLELRNFILDDYFDNKYKSVVEIQPPT
PTSVRREIILHPKRHPSPPPAGGDVPKQIRMKSMPEELGEEEREATTTT*
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mRNA from alignment at chr4:54588..56504-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00110.1 ID=NO04G00110.1|Name=NO04G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp|location=Sequence derived from alignment at chr4:54588..56504- (Nannochloropsis oceanica)
AGATCTCTGGCTGAGCCCTGCTCAAGGACAGTGCGCTCCTCCCCGTCACA
AGCATCCCCATCATCGCCTCCCCACTCTCACTCTACAATGCTGCCTCGAG
TGAGCCGTCTCGCCGTCCTCCTCCCTACAGCCATTACACACACCACCGTC
TGCAAAAAAATATGTGCCGTCACAAGCTCAAGAAGGAGGCCAAGGCAAGA
CAACCCTCCCCTCCTGCCGCAGTCGCTCTCCGGACTTGGTGGGGGTGGTG
GGAGGAGCATCAGCACAACCCTTCCGACCGCCGCCCCGGCGCCCAAGCGA
GCCGGTGGCGGTGGTGGCCCTAGAGGGAAAAGCCCGAACAATCTGGCTAA
AGAGAGGTAGGTGCAGGGCGAAAGACAGTATGGGTGAGCAAGTGGTAGGA
GTAGCGTGATGCTCCTCTTTCCCTCTCTCCCCCTCTCACCCCGCCCCTTC
CGCCCTCCCTTCTCTCAGTGCCTTTGTGATCAACGAGGCCATCAAAGCGC
GTACCGTCCGTCTGGTATTTAAAGAAGAAGGGTCGAGTGGGCCGCCCACC
TCTACCGTTGTCTCTCGACAGGAGGCATTGGCGAAGGCGAAGGAGGTGGG
GCTAGACCTGGTGTTGGGTAAGGATTGGATGGAAAGAGAGCTGGGAAAAC
GGGAGAGACAGAAAAGATGAAGAAGTTCTAGCCCATTTTCACTTTTTTTT
TCATCCGTTATAATATTCAGCAGCCGCACCTTTCACTATGCGCTAATTCT
CCTCTCCCAACTTTCCCCCCTGTCCACGCTGGCAGTTACCACGGCCTCGG
AGCCCTGGGTTTGCAAGCTCATGAACGCCCGTCGTGAAGAGTACCAGCGG
CAGAAGAAGGAGAGACGGATGAAGAAGAGCAGCAACACTTTGAAGGAGAT
CAGCATCAGGGTAGGGAGGCAGGGAGGGAGGAATAGAGAGATGTGAAAGC
AAGCACGAAGGCGACCCTGCCGTGTCAACGCGCGAAATTGGCCCTCACCG
ACCACAATATCTCTCCCTTCCTCTTCCGACATCTTTCAGGGAAACATCTC
GGACCACGATTTGCTGATCAAACTGAGGCGTGTCGACGAGTTCTTCGAGC
AAGGCCACAGCGTCCGGGTCATCATCCTTCCCACTGGCAGCCAGGTATGG
GCGGCTTCTTCTCCCCTCGTCCTTATTCCGTATTCCTGTCGTTGATATGC
CTCTGTTGCGTCGGGTGGTCGTAGGAGCTGTCTTTGCCATAATTTGTCGC
AAGACGTTTGTCGTCCGCTCACATGCCAATATCGTCCTCCGTCCTTCCCT
TCTTTTCTCCCTTTCTCCCCCCCCCGCCCCCCACTTCCACCAATTCACTC
TAGATGAATCTCCGCCCCCAGCGCTTGCTCGAGCTTCGAAACTTCATCTT
GGACGATTACTTTGACAACAAGTATAAGGTCAGGGTAGACAGATGGGGAG
GGGGGGAGGGAGGGGAAGGGCGTGGAGGAGAGAGGACGTTGAACGCGCGA
CGTGCTAAAGGTAGGATGAGCGAGGGGGATCGCAAGATAGTGATAGAAAA
AGAGAATAGGATCAATGATCCAGGAATATAATGAAGCGCAATCAGTATTC
ACTCGGTATTTCCTTCGTCCCTCCGCTCCCTTTCTCCTGTCACAGAGCGT
GGTCGAGATCCAACCCCCGACCCCGACCTCGGTAAGGAGAGAGATTATCC
TGCACCCCAAGCGCCATCCGTCACCCCCACCAGCGGGGGGAGACGTGCCC
AAACAGATACGAATGAAGTCAATGCCGGAAGAGCTGGGGGAAGAGGAGCG
GGAGGCGACGACAACCACATAGAGATAGGAGGATGTTGACGTGGTGAACG
GTAGCTAGTAACGGAGAGAGGGGAGAGGGGGCCCGCGGGCGAAAGCAAAG
GAAGTGACTGTAAGCAA
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Coding sequence (CDS) from alignment at chr4:54588..56504-

>NO04G00110.1 ID=NO04G00110.1|Name=NO04G00110.1|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at chr4:54588..56504- (Nannochloropsis oceanica)
ATGCTGCCTCGAGTGAGCCGTCTCGCCGTCCTCCTCCCTACAGCCATTAC
ACACACCACCGTCTGCAAAAAAATATGTGCCGTCACAAGCTCAAGAAGGA
GGCCAAGGCAAGACAACCCTCCCCTCCTGCCGCAGTCGCTCTCCGGACTT
GGTGGGGGTGGTGGGAGGAGCATCAGCACAACCCTTCCGACCGCCGCCCC
GGCGCCCAAGCGAGCCGGTGGCGGTGGTGGCCCTAGAGGGAAAAGCCCGA
ACAATCTGGCTAAAGAGAGTGCCTTTGTGATCAACGAGGCCATCAAAGCG
CGTACCGTCCGTCTGGTATTTAAAGAAGAAGGGTCGAGTGGGCCGCCCAC
CTCTACCGTTGTCTCTCGACAGGAGGCATTGGCGAAGGCGAAGGAGGTGG
GGCTAGACCTGGTGTTGGTTACCACGGCCTCGGAGCCCTGGGTTTGCAAG
CTCATGAACGCCCGTCGTGAAGAGTACCAGCGGCAGAAGAAGGAGAGACG
GATGAAGAAGAGCAGCAACACTTTGAAGGAGATCAGCATCAGGGGAAACA
TCTCGGACCACGATTTGCTGATCAAACTGAGGCGTGTCGACGAGTTCTTC
GAGCAAGGCCACAGCGTCCGGGTCATCATCCTTCCCACTGGCAGCCAGAT
GAATCTCCGCCCCCAGCGCTTGCTCGAGCTTCGAAACTTCATCTTGGACG
ATTACTTTGACAACAAGTATAAGAGCGTGGTCGAGATCCAACCCCCGACC
CCGACCTCGGTAAGGAGAGAGATTATCCTGCACCCCAAGCGCCATCCGTC
ACCCCCACCAGCGGGGGGAGACGTGCCCAAACAGATACGAATGAAGTCAA
TGCCGGAAGAGCTGGGGGAAGAGGAGCGGGAGGCGACGACAACCACATAG
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Synonyms
Publications