NO04G00110, NO04G00110 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G00110 vs. NCBI_GenBank
Match: EWM28407.1 (translation initiation factor if-3 [Nannochloropsis gaditana]) HSP 1 Score: 188.0 bits (476), Expect = 4.300e-44 Identity = 99/158 (62.66%), Postives = 124/158 (78.48%), Query Frame = 0 Query: 88 KESAFVINEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQMNLRPQRLLELRNFILDDYFDNKYKVRVD 246 K+ V+N+AI+A TVRLV K + + GP +S+++SR EALAKA+ GLDLVLVT AS+PWVCKL +A+RE+YQR KKE K + LKEISIRGNISDHDLLIKLRRV FFE G+SVR+II+PTG Q++LRP RL E+ +FIL DY +KYK V+ Sbjct: 94 KKGDLVVNKAIQAGTVRLVVKND-AGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKSFVE 250
BLAST of NO04G00110 vs. NCBI_GenBank
Match: XP_005854203.1 (translation initiation factor if-3 [Nannochloropsis gaditana CCMP526] >EKU22157.1 translation initiation factor if-3 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 179.5 bits (454), Expect = 1.500e-41 Identity = 95/158 (60.13%), Postives = 119/158 (75.32%), Query Frame = 0 Query: 88 KESAFVINEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQMNLRPQRLLELRNFILDDYFDNKYKVRVD 246 K+ V+N+AI+A T + GP +S+++SR EALAKA+ GLDLVLVT AS+PWVCKL +A+RE+YQR KKE K + LKEISIRGNISDHDLLIKLRRV FFE G+SVR+II+PTG Q++LRP RL E+ +FIL DY +KYK+R D Sbjct: 94 KKGDLVVNKAIQAGT-------NDAGGPASSSILSRDEALAKAQAAGLDLVLVTAASDPWVCKLADAKREKYQRVKKEKKTKNVGSVLKEISIRGNISDHDLLIKLRRVMGFFEHGYSVRIIIVPTGHQLSLRPGRLQEIYDFILKDYLVDKYKLRGD 244
BLAST of NO04G00110 vs. NCBI_GenBank
Match: WP_081895123.1 (translation initiation factor IF-3 [Mesoaciditoga lauensis]) HSP 1 Score: 92.8 bits (229), Expect = 1.900e-15 Identity = 54/130 (41.54%), Postives = 78/130 (60.00%), Query Frame = 0 Query: 88 KESAFVINEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQM 218 K++ + NE I++ TVRL+ E G +VS++EAL KAKE GLDLVLV+ S P VCK+M+ R Y++ KK+ K S + LK++ R I +HD KL V F + G+ VR+ I+ G +M Sbjct: 14 KKTGPLKNEEIRSSTVRLIGPEGSQFG-----IVSKEEALRKAKEYGLDLVLVSPNSRPPVCKIMDFGRYMYEQSKKQKKNKVSGSVLKQMKFRPKIDEHDYQTKLSHVKRFLQSGNKVRITIMFRGREM 138
BLAST of NO04G00110 vs. NCBI_GenBank
Match: WP_081944128.1 (translation initiation factor IF-3 [Tissierellia bacterium S5-A11]) HSP 1 Score: 92.8 bits (229), Expect = 1.900e-15 Identity = 54/127 (42.52%), Postives = 77/127 (60.63%), Query Frame = 0 Query: 94 INEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSN--TLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQMN 219 INE I+AR VRLV ++ G V+S++EALA A+E GLDLV V P VC+LMN + Y++QK+E +K TLKE+ +R NI DHD +K++ F E G V+V I+ G +++ Sbjct: 7 INEQIRAREVRLVSEDNEQLG-----VMSQREALAMAEEHGLDLVEVAPQGRPPVCRLMNYGKYRYEQQKREKEARKKQKVITLKEVKLRPNIEDHDFYVKMKNAIRFLEDGSKVKVTIMFRGRELS 128
BLAST of NO04G00110 vs. NCBI_GenBank
Match: WP_072395347.1 (translation initiation factor IF-3 [Hyphomicrobium sp. CS1GBMeth3]) HSP 1 Score: 92.0 bits (227), Expect = 3.200e-15 Identity = 54/126 (42.86%), Postives = 80/126 (63.49%), Query Frame = 0 Query: 94 INEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSNT--LKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQM 218 IN+AI+AR VRL+ + + G VVS+ +ALA+A+E GLDLV V+ +EP VCK+++ + +YQ QKK +K T +KEI +R I DHD +K+R + FFE+G V+V + G +M Sbjct: 14 INDAIRAREVRLIDENGQNVG-----VVSKLDALARAEEAGLDLVEVSPDAEPPVCKILDFGKYKYQEQKKAAEARKHQKTVEIKEIKMRPGIDDHDYDVKMRAIKRFFEEGDKVKVTLRFRGREM 134
BLAST of NO04G00110 vs. NCBI_GenBank
Match: WP_023786032.1 (translation initiation factor IF-3 [Hyphomicrobium nitrativorans] >AHB47620.1 translation initiation factor IF-3 [Hyphomicrobium nitrativorans NL23]) HSP 1 Score: 89.7 bits (221), Expect = 1.600e-14 Identity = 53/126 (42.06%), Postives = 80/126 (63.49%), Query Frame = 0 Query: 94 INEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSNT--LKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQM 218 IN+AI+AR VRL+ + + G VVS+ +ALA+A+E GLDLV ++ +EP VCK+++ + +YQ QKK +K T +KEI +R I DHD +K+R + FFE+G V+V + G +M Sbjct: 14 INDAIRARDVRLIDETGQNVG-----VVSKIDALARAEEAGLDLVEISPDAEPPVCKILDYGKFKYQEQKKAAEARKHQKTVEIKEIKMRPGIDDHDYDVKMRAMKRFFEEGDKVKVTLRFRGREM 134
BLAST of NO04G00110 vs. NCBI_GenBank
Match: WP_075939452.1 (translation initiation factor IF-3 [Negativicoccus massiliensis]) HSP 1 Score: 89.0 bits (219), Expect = 2.700e-14 Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 0 Query: 94 INEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSN--TLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQMN 219 INE I+AR VRLV ++ G V+S++EALA A+E GLDLV V P VC+LMN + Y++QK+E +K TLKE+ +R NI DHD +K++ F E V+V I+ G +++ Sbjct: 3 INEQIRAREVRLVSEDNEQLG-----VMSQREALAIAEEHGLDLVEVAPQGRPPVCRLMNYGKYRYEQQKREKEARKKQKVITLKEVKLRPNIEDHDFYVKMKNAIRFLEDESKVKVTIMFRGRELS 124
BLAST of NO04G00110 vs. NCBI_GenBank
Match: PMP70994.1 (translation initiation factor IF-3 [Mesoaciditoga sp.] >PMP80357.1 translation initiation factor IF-3 [Mesoaciditoga sp.]) HSP 1 Score: 89.0 bits (219), Expect = 2.700e-14 Identity = 51/129 (39.53%), Postives = 76/129 (58.91%), Query Frame = 0 Query: 89 ESAFVINEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSNTLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQM 218 +S F+ NE I TVRL+ + G +V R EAL KA+E G+DLVLV+++S P VCK+M+ + Y++ KK+ + S+ LK++ R I +HD KL V F E G+ VR+ I+ G +M Sbjct: 5 KSEFLKNEEIHYPTVRLIGPDGAQLG-----IVKRSEALQKAEEYGMDLVLVSSSSNPPVCKIMDFGKYIYEQNKKQKKSRNVSDVLKQMKFRPKIDEHDYQTKLSHVRNFIENGNKVRITIMFRGREM 128
BLAST of NO04G00110 vs. NCBI_GenBank
Match: WP_020083991.1 (translation initiation factor IF-3 [Hyphomicrobium zavarzinii]) HSP 1 Score: 86.3 bits (212), Expect = 1.700e-13 Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 0 Query: 94 INEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSN--TLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQM 218 IN+AI+AR VRL+ + + G VVS+ +A+A+A+ GLDLV V+ +EP VCK+++ + +YQ QKK +K +KEI +R I DHD +K+R + FFE+G V+V + G +M Sbjct: 14 INDAIRAREVRLIDETGQNVG-----VVSKVDAIARAEAAGLDLVEVSPDAEPPVCKILDFGKYKYQEQKKAAEARKHQKIVEIKEIKMRPGIDDHDYDVKMRAIKRFFEEGDKVKVTLRFRGREM 134
BLAST of NO04G00110 vs. NCBI_GenBank
Match: WP_046847358.1 (translation initiation factor IF-3 [Hyphomicrobium sp. GJ21] >CEJ86969.1 Translation initiation factor IF-3 [Hyphomicrobium sp. GJ21]) HSP 1 Score: 85.9 bits (211), Expect = 2.300e-13 Identity = 49/126 (38.89%), Postives = 80/126 (63.49%), Query Frame = 0 Query: 94 INEAIKARTVRLVFKEEGSSGPPTSTVVSRQEALAKAKEVGLDLVLVTTASEPWVCKLMNARREEYQRQKKEXXMKKSSN--TLKEISIRGNISDHDLLIKLRRVDEFFEQGHSVRVIILPTGSQM 218 IN+ I+AR VRL+ + + G V+++ +ALA+A++VGLDLV ++ +EP VCK+++ + ++Q QKK +K+ LKEI +R I DHD +KLR + FFE+G V++ + G +M Sbjct: 15 INDQIRAREVRLIDENGQNIG-----VIAKFDALARAEDVGLDLVEISPDAEPPVCKILDFGKFKFQEQKKAAEARKNQKIVELKEIKMRPGIDDHDYDVKLRAIKRFFEEGDKVKITLRFRGREM 135 The following BLAST results are available for this feature:
BLAST of NO04G00110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20 Position : 0 Zoom : x 1
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G00110 ID=NO04G00110|Name=NO04G00110|organism=Nannochloropsis oceanica|type=gene|length=1917bpback to top protein sequence of NO04G00110.2 >NO04G00110.2-protein ID=NO04G00110.2-protein|Name=NO04G00110.2|organism=Nannochloropsis oceanica|type=polypeptide|length=292bpback to top protein sequence of NO04G00110.1 >NO04G00110.1-protein ID=NO04G00110.1-protein|Name=NO04G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bpback to top Synonyms
Publications
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