NO30G00220, NO30G00220 (gene) Nannochloropsis oceanica

Overview
NameNO30G00220
Unique NameNO30G00220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2803
Alignment locationchr30:95495..98297 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:95495..98297 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
IPR013767PAS_fold
IPR000014PAS
Homology
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BLAST of NO30G00220 vs. NCBI_GenBank
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 92.8 bits (229), Expect = 2.500e-15
Identity = 56/134 (41.79%), Postives = 74/134 (55.22%), Query Frame = 0 
Query:  212 RRATKEDLSGLTAEEKVERRKIRARMYNRLSRYRCNRLHGDLHKDVSRMEMYKNIVEDAPDMICVISPDIQSQVLYINKTARCILHAEPAQLVGSSFWNIVHPEDKMALFGALTAVSAFKSVGKVERLRCRVVT 346
            +RA + DLSG T  EK ERRK RARMY+   R R N     L + V  + +YK +V++AP++  V+S D Q++VLY N          P   VG S W +VH EDK  + GA    SA     +V R RCR+ T
Sbjct:  278 KRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAF--ASAVMEKEEVGRARCRLGT 409
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BLAST of NO30G00220 vs. NCBI_GenBank
Match: EWM23655.1 (pas pac sensor hybrid histidine kinase [Nannochloropsis gaditana])

HSP 1 Score: 78.6 bits (192), Expect = 4.900e-11
Identity = 53/180 (29.44%), Postives = 93/180 (51.67%), Query Frame = 0 
Query:  205 LPSTEKQRRATKEDLSGLTAEEKVERRKIRARMYNRLSRYRCNRLHGDLHKDVSRMEMYKNIVEDAPDMICVISPDIQSQVLYINKTARCILHAEP-----AQLVGSSFWNIVHPEDKMALFGALTAVSAFKSVGKVERLRCRVVTDN----------PGIYVSVRMTLANGMQGIVCVM 370
            L +  K+RRA + D S LT EE+++ +K RAR Y+ ++R R ++    L  +V R+++YK +VE APD + ++S D Q ++L+ NK +  +    P       L G   W  +   D++A+F A+  V   K +  V  + C V   +          P   + V +TL +  QG++ ++
Sbjct:  319 LTTLGKKRRAPRMDFSKLTPEEQIQWKKARARKYSAMARERQSKKEEALRAEVGRLQVYKTLVEAAPDAMLLLSNDAQGRILFANKESEKLFGFIPKGGAEKPLPGRCLWEWLDVTDRVAIFAAIGKVVLCKHL--VRAVPCTVWLPSGSVPKHDARGPQQSLKVLITLRSSAQGLILII 496
The following BLAST results are available for this feature:
BLAST of NO30G00220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23721.12.500e-1541.79conserved unknown protein [Nannochloropsis gaditan... [more]
EWM23655.14.900e-1129.44pas pac sensor hybrid histidine kinase [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR074ncniR074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00220.1NO30G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00220.1NO30G00220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00220 ID=NO30G00220|Name=NO30G00220|organism=Nannochloropsis oceanica|type=gene|length=2803bp
CAATAATAGAGTGCGTCGTCCGCCACACAATGTCGGCCTTTGATTCCGAC
CCCAAAGGATTAGCGGGGCACCCTCCATTTCCTGGAGATATTTGCCGAGC
TAGCTGCAAGCCCTCTCGGTGTATAATCCGACGCAGCAGATTGATTTCCT
TGCTGCCACATGTTCTTGCTTGCTTTCGCTGCCTAAGCATAGCTGGCAGG
CTGGCCACAGACAGACTGGCTGGCTGGCCGCAGACAGACTGGCTGGCTGG
CCACAGACAGACAGTAGCACCACGTGTGTCTTCATGTCGTGCCTGCGCTC
CGCCTATGCCGTCTTAGAGCCATCTCCCAGCTCCCATCTCCAATCCAACT
GCCCATGCATGCAGTGTCACAAATCTCAATCTATCTGAGCTTCTGCTTGC
CCAATGACATTCTCTAATACGTGTTCTCATTCTCCAATCGGGGTTTTTGG
CCCCACTGCTGAGCAGCGGTGGGACCAGAGTCAGCGCGAACTGCCTCCAC
GGAATGAAGGATTCGTTGTCTCTTGACTTAGACGAGAATAAGGCACACGG
CGGCGCGGCAGCCCTGTGCAGCCTAGCAACACTCTCTGCCGCTACTGACC
CGCCTCCCGTCTCCACGCCGTGTTATCCCTCGTCTTGGGCCTCTTCTCTC
GTAGCAGCGAACCACGgtacgtttttggaaggcgattggtgcccattatc
ccccaacttgcctcctctatgcctctatgtacaccttctcctgattaact
acgtacaccatcccccgacttgtacgtggccttgtacatggaagcgtacg
tgcacgacacactccgcataatgtttctttttcatcttttcatttttcat
tttcccgtcgccattatgtgtttggccaccagcatgctgacaaatgcttc
tacgacattgtaagcaaaaagaatatatacacaggtatatcccgccccga
gtcacacacaagcgtctacatgcgcaccagctacatgcagcgcatctatt
cgtagatgcgcacgctcacttcaacatacatacataccccccccccacac
acacagTCTTAGAACTTCAGAAGCAGGTGGTGGACAAATCATTGCAATCC
TTTCTGACCCAGTACCAGCAACAGTTTCACCCGTCGGCCATTCATCAGCA
TGCTATCCTGGATGATAAGATGACCAAGGTACTCTCCCAGGCCTCGCCGT
CTTTTCTAGCACAGCAGCACCACCAGCTCCAGCAGTATTTCAACCAAAGT
CACCTACCACTGCAGCTTCATTACTTCCTAAAATGCCAAATGCAGCCAAT
TGAAAAGCAGCATATGATGGCGTCGACCAAGTGCTTTTCTATGAACGAGT
TACCGCTCACCACCGAGCACGTGGAAGCCAAGATCTACCCACCGATTGCA
CCGCTGAGCGAGACCCCTCTGCTGCTGCAGGAGATTCGAGCTGGTGTGAT
GGGTGTTTCGGTGGGACGGCTGCCTGGCAGATACTCCAAGATCATGGGAA
AGTACCTTCCGgtaagagaacagagagatatgagcatggtgcttgcgtct
tttctcagcctttgttgggaactcactctttgtttgtctccattcactcg
ttctttatctacatcagAGCACAGAGAAGCAGCGACGAGCAACGAAAGAG
GACTTGTCGGGATTAACGGCAGAGGAGAAGGTGGAGCGACGCAAGATTCG
CGCACGCATGTACAATCGCTTGTCTCGCTACCGGTGCAACCGGTTGCATG
GTGACCTGCACAAGGACGTGAGTCGCATGGAAATGTACAAGAACATTGTT
GAAGATGCGCCGGACATGATATGTGTCATCTCCCCCGACATTCAGAGCCA
GGTGCTGTACATCAACAAGACCGCTCGATGCATCCTTCACGCTGAGCCCG
CGCAGCTGGTGGGGTCCAGCTTCTGGAATATTGTCCACCCGGAAGATAAG
ATGGCGCTGTTCGGGGCACTCACTGCCGTCTCCGCCTTCAAGTCGGTCGG
GAAAGTGGAACGGCTACGCTGTCGTGTTGTCACCGACAACCCCGGTATAT
ATGTATCTGTCCGGATGACGCTCGCAAACGGGATGCAGGGCATTGTCTGC
GTAATGTGCCACGAAGACCCTCTGTCTACCGTTTCGCGCGTGTCGCCTGA
TGGACGAGTGTGTCTTATGTAGGACGCTCTATTTTTGGGTACCATGATTA
TCTGACGATGGCTTGTGGAGTACATAAATTACTATCGCGGTGGACACGGC
AGAGGGTGTCCCTTGACTTCTACGGCGACATGATGTGGCCTGATCCGCTA
CTCTCGGGGACAAGGGCATCCGACCGGAACGAGTGGAGAGGCAATGAAAA
CGATACATTTCCGCTTTATGCAGTAGAATCAAATTAGCAGAAAGCTTTCA
GAGGATTCTTCTTTCCCTTGTAGACCGTCTGCTGCGTCTTTCGCGCGACG
TTGACGATTATGTAAACCAGGGAAGGGGAGTCAGGAGGTCCTTTTCACGT
GACAAGTGATGAAACATTTTGGAAATACCGTTACTAAAAGCGGCGACATT
CCTAAAAGTAGCTATACATTGGATGAGGAAAAAGGTCACAAGTTCAAATA
TGATTGATAAAAAAGAAGGGAAAATGTTTGATATGAGATGAATTTTGTTG
AATTACGTAGATAGGAAGAAGAAGACGTGGGGAGAGAGAGAGTGAGTCTG
AGAGATAGATAGAGAGATAGCGATAGAACGATAGAGAGAAAAAGAGAGAG
GAAAAAAAGAGGGCTCGACTTGCCAGGGAAATAATTTCATACATGCTGGT
GCT
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protein sequence of NO30G00220.1

>NO30G00220.1-protein ID=NO30G00220.1-protein|Name=NO30G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MKDSLSLDLDENKAHGGAAALCSLATLSAATDPPPVSTPCYPSSWASSLV
AANHVLELQKQVVDKSLQSFLTQYQQQFHPSAIHQHAILDDKMTKVLSQA
SPSFLAQQHHQLQQYFNQSHLPLQLHYFLKCQMQPIEKQHMMASTKCFSM
NELPLTTEHVEAKIYPPIAPLSETPLLLQEIRAGVMGVSVGRLPGRYSKI
MGKYLPSTEKQRRATKEDLSGLTAEEKVERRKIRARMYNRLSRYRCNRLH
GDLHKDVSRMEMYKNIVEDAPDMICVISPDIQSQVLYINKTARCILHAEP
AQLVGSSFWNIVHPEDKMALFGALTAVSAFKSVGKVERLRCRVVTDNPGI
YVSVRMTLANGMQGIVCVMCHEDPLSTVSRVSPDGRVCLM*
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Synonyms
Publications