NO30G00220.1, NO30G00220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00220.1
Unique NameNO30G00220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2307
Alignment locationchr30:95495..98297 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:95495..98297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00220.1 vs.
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 96.3 bits (238), Expect = 2.300e-16
Identity = 64/178 (35.96%), Postives = 88/178 (49.44%), Query Frame = 0 
Query:  212 RRATKEDLSGLTAEEKVERRKIRARMYNRLSRYRCNRLHGDLHKDVSRMEMYKNIVEDAPDMICVISPDIQSQVLYINKTARCILHAEPAQLVGSSFWNIVHPEDKMALFGALTAVSAFKSVGKVERLRCRVVTDN----------------PGIYVSVRMTLANGMQGIVCVMCHED 374
            +RA + DLSG T  EK ERRK RARMY+   R R N     L + V  + +YK +V++AP++  V+S D Q++VLY N          P   VG S W +VH EDK  + GA    SA     +V R RCR+ T                      V V +++  G QG++ V+  ED
Sbjct:  278 KRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAF--ASAVMEKEEVGRARCRLGTSKGQGSKEAGGAGREVPVAVSEVPVAVSVRRGTQGLILVIRRED 453
The following BLAST results are available for this feature:
BLAST of NO30G00220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23721.12.300e-1635.96conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00220NO30G00220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00220.1NO30G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00220.1.cds1NO30G00220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00220.1.cds2NO30G00220.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00220.1.cds3NO30G00220.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00220.1 ID=NO30G00220.1|Name=NO30G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2307bp
CAATAATAGAGTGCGTCGTCCGCCACACAATGTCGGCCTTTGATTCCGAC
CCCAAAGGATTAGCGGGGCACCCTCCATTTCCTGGAGATATTTGCCGAGC
TAGCTGCAAGCCCTCTCGGTGTATAATCCGACGCAGCAGATTGATTTCCT
TGCTGCCACATGTTCTTGCTTGCTTTCGCTGCCTAAGCATAGCTGGCAGG
CTGGCCACAGACAGACTGGCTGGCTGGCCGCAGACAGACTGGCTGGCTGG
CCACAGACAGACAGTAGCACCACGTGTGTCTTCATGTCGTGCCTGCGCTC
CGCCTATGCCGTCTTAGAGCCATCTCCCAGCTCCCATCTCCAATCCAACT
GCCCATGCATGCAGTGTCACAAATCTCAATCTATCTGAGCTTCTGCTTGC
CCAATGACATTCTCTAATACGTGTTCTCATTCTCCAATCGGGGTTTTTGG
CCCCACTGCTGAGCAGCGGTGGGACCAGAGTCAGCGCGAACTGCCTCCAC
GGAATGAAGGATTCGTTGTCTCTTGACTTAGACGAGAATAAGGCACACGG
CGGCGCGGCAGCCCTGTGCAGCCTAGCAACACTCTCTGCCGCTACTGACC
CGCCTCCCGTCTCCACGCCGTGTTATCCCTCGTCTTGGGCCTCTTCTCTC
GTAGCAGCGAACCACGTCTTAGAACTTCAGAAGCAGGTGGTGGACAAATC
ATTGCAATCCTTTCTGACCCAGTACCAGCAACAGTTTCACCCGTCGGCCA
TTCATCAGCATGCTATCCTGGATGATAAGATGACCAAGGTACTCTCCCAG
GCCTCGCCGTCTTTTCTAGCACAGCAGCACCACCAGCTCCAGCAGTATTT
CAACCAAAGTCACCTACCACTGCAGCTTCATTACTTCCTAAAATGCCAAA
TGCAGCCAATTGAAAAGCAGCATATGATGGCGTCGACCAAGTGCTTTTCT
ATGAACGAGTTACCGCTCACCACCGAGCACGTGGAAGCCAAGATCTACCC
ACCGATTGCACCGCTGAGCGAGACCCCTCTGCTGCTGCAGGAGATTCGAG
CTGGTGTGATGGGTGTTTCGGTGGGACGGCTGCCTGGCAGATACTCCAAG
ATCATGGGAAAGTACCTTCCGAGCACAGAGAAGCAGCGACGAGCAACGAA
AGAGGACTTGTCGGGATTAACGGCAGAGGAGAAGGTGGAGCGACGCAAGA
TTCGCGCACGCATGTACAATCGCTTGTCTCGCTACCGGTGCAACCGGTTG
CATGGTGACCTGCACAAGGACGTGAGTCGCATGGAAATGTACAAGAACAT
TGTTGAAGATGCGCCGGACATGATATGTGTCATCTCCCCCGACATTCAGA
GCCAGGTGCTGTACATCAACAAGACCGCTCGATGCATCCTTCACGCTGAG
CCCGCGCAGCTGGTGGGGTCCAGCTTCTGGAATATTGTCCACCCGGAAGA
TAAGATGGCGCTGTTCGGGGCACTCACTGCCGTCTCCGCCTTCAAGTCGG
TCGGGAAAGTGGAACGGCTACGCTGTCGTGTTGTCACCGACAACCCCGGT
ATATATGTATCTGTCCGGATGACGCTCGCAAACGGGATGCAGGGCATTGT
CTGCGTAATGTGCCACGAAGACCCTCTGTCTACCGTTTCGCGCGTGTCGC
CTGATGGACGAGTGTGTCTTATGTAGGACGCTCTATTTTTGGGTACCATG
ATTATCTGACGATGGCTTGTGGAGTACATAAATTACTATCGCGGTGGACA
CGGCAGAGGGTGTCCCTTGACTTCTACGGCGACATGATGTGGCCTGATCC
GCTACTCTCGGGGACAAGGGCATCCGACCGGAACGAGTGGAGAGGCAATG
AAAACGATACATTTCCGCTTTATGCAGTAGAATCAAATTAGCAGAAAGCT
TTCAGAGGATTCTTCTTTCCCTTGTAGACCGTCTGCTGCGTCTTTCGCGC
GACGTTGACGATTATGTAAACCAGGGAAGGGGAGTCAGGAGGTCCTTTTC
ACGTGACAAGTGATGAAACATTTTGGAAATACCGTTACTAAAAGCGGCGA
CATTCCTAAAAGTAGCTATACATTGGATGAGGAAAAAGGTCACAAGTTCA
AATATGATTGATAAAAAAGAAGGGAAAATGTTTGATATGAGATGAATTTT
GTTGAATTACGTAGATAGGAAGAAGAAGACGTGGGGAGAGAGAGAGTGAG
TCTGAGAGATAGATAGAGAGATAGCGATAGAACGATAGAGAGAAAAAGAG
AGAGGAAAAAAAGAGGGCTCGACTTGCCAGGGAAATAATTTCATACATGC
TGGTGCT
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protein sequence of NO30G00220.1

>NO30G00220.1-protein ID=NO30G00220.1-protein|Name=NO30G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MKDSLSLDLDENKAHGGAAALCSLATLSAATDPPPVSTPCYPSSWASSLV
AANHVLELQKQVVDKSLQSFLTQYQQQFHPSAIHQHAILDDKMTKVLSQA
SPSFLAQQHHQLQQYFNQSHLPLQLHYFLKCQMQPIEKQHMMASTKCFSM
NELPLTTEHVEAKIYPPIAPLSETPLLLQEIRAGVMGVSVGRLPGRYSKI
MGKYLPSTEKQRRATKEDLSGLTAEEKVERRKIRARMYNRLSRYRCNRLH
GDLHKDVSRMEMYKNIVEDAPDMICVISPDIQSQVLYINKTARCILHAEP
AQLVGSSFWNIVHPEDKMALFGALTAVSAFKSVGKVERLRCRVVTDNPGI
YVSVRMTLANGMQGIVCVMCHEDPLSTVSRVSPDGRVCLM*
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mRNA from alignment at chr30:95495..98297+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00220.1 ID=NO30G00220.1|Name=NO30G00220.1|organism=Nannochloropsis oceanica|type=mRNA|length=2803bp|location=Sequence derived from alignment at chr30:95495..98297+ (Nannochloropsis oceanica)
CAATAATAGAGTGCGTCGTCCGCCACACAATGTCGGCCTTTGATTCCGAC
CCCAAAGGATTAGCGGGGCACCCTCCATTTCCTGGAGATATTTGCCGAGC
TAGCTGCAAGCCCTCTCGGTGTATAATCCGACGCAGCAGATTGATTTCCT
TGCTGCCACATGTTCTTGCTTGCTTTCGCTGCCTAAGCATAGCTGGCAGG
CTGGCCACAGACAGACTGGCTGGCTGGCCGCAGACAGACTGGCTGGCTGG
CCACAGACAGACAGTAGCACCACGTGTGTCTTCATGTCGTGCCTGCGCTC
CGCCTATGCCGTCTTAGAGCCATCTCCCAGCTCCCATCTCCAATCCAACT
GCCCATGCATGCAGTGTCACAAATCTCAATCTATCTGAGCTTCTGCTTGC
CCAATGACATTCTCTAATACGTGTTCTCATTCTCCAATCGGGGTTTTTGG
CCCCACTGCTGAGCAGCGGTGGGACCAGAGTCAGCGCGAACTGCCTCCAC
GGAATGAAGGATTCGTTGTCTCTTGACTTAGACGAGAATAAGGCACACGG
CGGCGCGGCAGCCCTGTGCAGCCTAGCAACACTCTCTGCCGCTACTGACC
CGCCTCCCGTCTCCACGCCGTGTTATCCCTCGTCTTGGGCCTCTTCTCTC
GTAGCAGCGAACCACGGTACGTTTTTGGAAGGCGATTGGTGCCCATTATC
CCCCAACTTGCCTCCTCTATGCCTCTATGTACACCTTCTCCTGATTAACT
ACGTACACCATCCCCCGACTTGTACGTGGCCTTGTACATGGAAGCGTACG
TGCACGACACACTCCGCATAATGTTTCTTTTTCATCTTTTCATTTTTCAT
TTTCCCGTCGCCATTATGTGTTTGGCCACCAGCATGCTGACAAATGCTTC
TACGACATTGTAAGCAAAAAGAATATATACACAGGTATATCCCGCCCCGA
GTCACACACAAGCGTCTACATGCGCACCAGCTACATGCAGCGCATCTATT
CGTAGATGCGCACGCTCACTTCAACATACATACATACCCCCCCCCCACAC
ACACAGTCTTAGAACTTCAGAAGCAGGTGGTGGACAAATCATTGCAATCC
TTTCTGACCCAGTACCAGCAACAGTTTCACCCGTCGGCCATTCATCAGCA
TGCTATCCTGGATGATAAGATGACCAAGGTACTCTCCCAGGCCTCGCCGT
CTTTTCTAGCACAGCAGCACCACCAGCTCCAGCAGTATTTCAACCAAAGT
CACCTACCACTGCAGCTTCATTACTTCCTAAAATGCCAAATGCAGCCAAT
TGAAAAGCAGCATATGATGGCGTCGACCAAGTGCTTTTCTATGAACGAGT
TACCGCTCACCACCGAGCACGTGGAAGCCAAGATCTACCCACCGATTGCA
CCGCTGAGCGAGACCCCTCTGCTGCTGCAGGAGATTCGAGCTGGTGTGAT
GGGTGTTTCGGTGGGACGGCTGCCTGGCAGATACTCCAAGATCATGGGAA
AGTACCTTCCGGTAAGAGAACAGAGAGATATGAGCATGGTGCTTGCGTCT
TTTCTCAGCCTTTGTTGGGAACTCACTCTTTGTTTGTCTCCATTCACTCG
TTCTTTATCTACATCAGAGCACAGAGAAGCAGCGACGAGCAACGAAAGAG
GACTTGTCGGGATTAACGGCAGAGGAGAAGGTGGAGCGACGCAAGATTCG
CGCACGCATGTACAATCGCTTGTCTCGCTACCGGTGCAACCGGTTGCATG
GTGACCTGCACAAGGACGTGAGTCGCATGGAAATGTACAAGAACATTGTT
GAAGATGCGCCGGACATGATATGTGTCATCTCCCCCGACATTCAGAGCCA
GGTGCTGTACATCAACAAGACCGCTCGATGCATCCTTCACGCTGAGCCCG
CGCAGCTGGTGGGGTCCAGCTTCTGGAATATTGTCCACCCGGAAGATAAG
ATGGCGCTGTTCGGGGCACTCACTGCCGTCTCCGCCTTCAAGTCGGTCGG
GAAAGTGGAACGGCTACGCTGTCGTGTTGTCACCGACAACCCCGGTATAT
ATGTATCTGTCCGGATGACGCTCGCAAACGGGATGCAGGGCATTGTCTGC
GTAATGTGCCACGAAGACCCTCTGTCTACCGTTTCGCGCGTGTCGCCTGA
TGGACGAGTGTGTCTTATGTAGGACGCTCTATTTTTGGGTACCATGATTA
TCTGACGATGGCTTGTGGAGTACATAAATTACTATCGCGGTGGACACGGC
AGAGGGTGTCCCTTGACTTCTACGGCGACATGATGTGGCCTGATCCGCTA
CTCTCGGGGACAAGGGCATCCGACCGGAACGAGTGGAGAGGCAATGAAAA
CGATACATTTCCGCTTTATGCAGTAGAATCAAATTAGCAGAAAGCTTTCA
GAGGATTCTTCTTTCCCTTGTAGACCGTCTGCTGCGTCTTTCGCGCGACG
TTGACGATTATGTAAACCAGGGAAGGGGAGTCAGGAGGTCCTTTTCACGT
GACAAGTGATGAAACATTTTGGAAATACCGTTACTAAAAGCGGCGACATT
CCTAAAAGTAGCTATACATTGGATGAGGAAAAAGGTCACAAGTTCAAATA
TGATTGATAAAAAAGAAGGGAAAATGTTTGATATGAGATGAATTTTGTTG
AATTACGTAGATAGGAAGAAGAAGACGTGGGGAGAGAGAGAGTGAGTCTG
AGAGATAGATAGAGAGATAGCGATAGAACGATAGAGAGAAAAAGAGAGAG
GAAAAAAAGAGGGCTCGACTTGCCAGGGAAATAATTTCATACATGCTGGT
GCT
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Coding sequence (CDS) from alignment at chr30:95495..98297+

>NO30G00220.1 ID=NO30G00220.1|Name=NO30G00220.1|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at chr30:95495..98297+ (Nannochloropsis oceanica)
ATGAAGGATTCGTTGTCTCTTGACTTAGACGAGAATAAGGCACACGGCGG
CGCGGCAGCCCTGTGCAGCCTAGCAACACTCTCTGCCGCTACTGACCCGC
CTCCCGTCTCCACGCCGTGTTATCCCTCGTCTTGGGCCTCTTCTCTCGTA
GCAGCGAACCACGTCTTAGAACTTCAGAAGCAGGTGGTGGACAAATCATT
GCAATCCTTTCTGACCCAGTACCAGCAACAGTTTCACCCGTCGGCCATTC
ATCAGCATGCTATCCTGGATGATAAGATGACCAAGGTACTCTCCCAGGCC
TCGCCGTCTTTTCTAGCACAGCAGCACCACCAGCTCCAGCAGTATTTCAA
CCAAAGTCACCTACCACTGCAGCTTCATTACTTCCTAAAATGCCAAATGC
AGCCAATTGAAAAGCAGCATATGATGGCGTCGACCAAGTGCTTTTCTATG
AACGAGTTACCGCTCACCACCGAGCACGTGGAAGCCAAGATCTACCCACC
GATTGCACCGCTGAGCGAGACCCCTCTGCTGCTGCAGGAGATTCGAGCTG
GTGTGATGGGTGTTTCGGTGGGACGGCTGCCTGGCAGATACTCCAAGATC
ATGGGAAAGTACCTTCCGAGCACAGAGAAGCAGCGACGAGCAACGAAAGA
GGACTTGTCGGGATTAACGGCAGAGGAGAAGGTGGAGCGACGCAAGATTC
GCGCACGCATGTACAATCGCTTGTCTCGCTACCGGTGCAACCGGTTGCAT
GGTGACCTGCACAAGGACGTGAGTCGCATGGAAATGTACAAGAACATTGT
TGAAGATGCGCCGGACATGATATGTGTCATCTCCCCCGACATTCAGAGCC
AGGTGCTGTACATCAACAAGACCGCTCGATGCATCCTTCACGCTGAGCCC
GCGCAGCTGGTGGGGTCCAGCTTCTGGAATATTGTCCACCCGGAAGATAA
GATGGCGCTGTTCGGGGCACTCACTGCCGTCTCCGCCTTCAAGTCGGTCG
GGAAAGTGGAACGGCTACGCTGTCGTGTTGTCACCGACAACCCCGGTATA
TATGTATCTGTCCGGATGACGCTCGCAAACGGGATGCAGGGCATTGTCTG
CGTAATGTGCCACGAAGACCCTCTGTCTACCGTTTCGCGCGTGTCGCCTG
ATGGACGAGTGTGTCTTATGTAG
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Synonyms
Publications