NO03G05770, NO03G05770 (gene) Nannochloropsis oceanica

Overview
NameNO03G05770
Unique NameNO03G05770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length753
Alignment locationchr3:1656722..1657474 +

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Properties
Property NameValue
DescriptionExosome complex component RRP41
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1656722..1657474 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036345ExoRNase_PH_dom2_sf
IPR020568Ribosomal_S5_D2-typ_fold
IPR001247ExoRNase_PH_dom1
IPR015847ExoRNase_PH_dom2
Homology
BLAST of NO03G05770 vs. NCBI_GenBank
Match: XP_005854552.1 (exosome complex component RRP41 [Nannochloropsis gaditana CCMP526] >EKU21808.1 exosome complex component RRP41 [Nannochloropsis gaditana CCMP526] >EWM30053.1 exosome complex exonuclease rrp41 [Nannochloropsis gaditana])

HSP 1 Score: 266.9 bits (681), Expect = 4.900e-68
Identity = 145/248 (58.47%), Postives = 172/248 (69.35%), Query Frame = 0
Query:    3 KRGAGEWVSLAGLRTDGRRPHELRRLRCAL----------------------------------------------------GFDRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQLAGAKLALLR 199
            +RGAGEWVSLAGLRTDGRRP+ELRR+ C L                                                    GFDRKKRR TDRASLE SL +KQTFE A++R++YPRTQ+DIQVYVLQ DGS LP  INAVSLALVDAG+AMKEMV ACSVALLD Q VLDVTYKEQSSGGAY+PLAAFP H +++L+QCE+RL+G R EE++  A+ G+RQV+ L Q QV+E+T++LAGA+LAL R
Sbjct:    2 RRGAGEWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGARLALPR 249          
BLAST of NO03G05770 vs. NCBI_GenBank
Match: CBJ26180.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 162.9 bits (411), Expect = 1.000e-36
Identity = 94/239 (39.33%), Postives = 132/239 (55.23%), Query Frame = 0
Query:    8 EWVSLAGLRTDGRRPHELRRLRCALGF----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQLAGAKL 195
            +++SLAGLR DGRR  E+RR+R   G                                                     +RKKRR T+R  +E++L VK+ FE AI+ H+YPRTQIDI ++V+Q+DG  LP  INA SLALVDAG+AM ++V ACS   LD   V+D+ Y EQ+ GG YLP+A  P  D++LL + ESRL    FEE++  A    +QV ++++A V+EH   L  +++
Sbjct:    6 DFISLAGLRPDGRRGREIRRVRSRFGVFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIVNCEYNVAPFSGSERKKRRPTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVKEHAGALLSSQI 244          
BLAST of NO03G05770 vs. NCBI_GenBank
Match: XP_013418239.1 (exosome complex component RRP41 [Lingula anatina])

HSP 1 Score: 141.0 bits (354), Expect = 4.100e-30
Identity = 85/231 (36.80%), Postives = 121/231 (52.38%), Query Frame = 0
Query:    8 EWVSLAGLRTDGRRPHELRRLRCALGF-----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREH 186
            E +S  G R DGRRPHELRR++C +G                                                      +RK+R   DR S E++  ++QTFEAA+L H+YPR+QIDI V VLQ+DG    A +NA +LA++DAGI MK+ V ACS + ++D  V+D+ Y E+SSG A L +A  P  +Q++LLQ  SRL      +++ +A  G + V  ++   VREH
Sbjct:    5 ELLSDQGFRIDGRRPHELRRIQCRMGVFGQAEGSAYVEQGNTKVLAAVYGPHEIRGSRGKMQPDKVLINCQYSMATFSTGERKRRPRGDRKSQEMTKHLQQTFEAAVLTHLYPRSQIDIFVEVLQSDGGNYCASVNAATLAIIDAGIPMKDYVCACSASYIEDNPVVDINYLEESSGSAELIMAMLPKSEQIVLLQMNSRLHEDNLSKVMDMATQGCKDVHSILDTAVREH 235          
BLAST of NO03G05770 vs. NCBI_GenBank
Match: GAQ84546.1 (3'-5'-exoribonuclease family protein [Klebsormidium nitens])

HSP 1 Score: 139.4 bits (350), Expect = 1.200e-29
Identity = 86/235 (36.60%), Postives = 125/235 (53.19%), Query Frame = 0
Query:    8 EWVSLAGLRTDGRRPHELRRLRCALGF----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQLA 191
            E+VS  GLR DGRRP E+R+L+C L                                                      +R++R   DR S+E+SL ++Q+ EAAIL H+ PRTQIDI V VLQ DG    A INA +LAL DAG+ M+++VA+C+   L+   +LD+ Y E S+GG  L +A  P  ++V LLQ +S+L    FE ++G+A+ G + +A  M+  + EHT++ A
Sbjct:    2 EYVSPEGLRLDGRRPKEVRQLKCELAVLHRADGSAYLEMGNTKVLATVYGPHEVSQRSQSLHDRALVHCEYSMATFSTGERRRRPKGDRRSVELSLVIRQSMEAAILTHLLPRTQIDIYVQVLQADGGTRAACINAATLALADAGVPMRDLVASCAAGYLNGTPLLDLNYVEDSAGGPDLTVALLPKAEKVTLLQMDSKLPLDTFEAVLGLAMDGCKAIAAHMRQALLEHTRKQA 236          
BLAST of NO03G05770 vs. NCBI_GenBank
Match: PRP80920.1 (hypothetical protein PROFUN_11361 [Planoprotostelium fungivorum])

HSP 1 Score: 138.7 bits (348), Expect = 2.000e-29
Identity = 84/234 (35.90%), Postives = 121/234 (51.71%), Query Frame = 0
Query:    8 EWVSLAGLRTDGRRPHELRRLRCALGF----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQL 190
            E++S  GLR DGRRP ELRR+RC L                                                      +RKKR   DR S E+SL +K+TFE+ I+  ++PR+QIDI V VLQ DG    A INA +LAL+DAGI MK+ V AC+   ++   +LD+ Y E S+GG  +PLA  P    + +LQ +S+L    FE+++ +A+ G + +  ++  +V +HTK L
Sbjct:  385 EYISPDGLRLDGRRPEELRRIRCQLAVFSRANGSAYFEQGNTKVIAAVYGPRDVGNKTKALHDRAIINCEYSMATFSTGERKKRSKGDRRSAEISLVIKKTFESVIVTTLFPRSQIDIFVQVLQADGGTRCASINAATLALIDAGIPMKDFVCACAAGCIEGTPLLDLNYIEDSAGGPDVPLALLPQTQTIAMLQMDSKLPIETFEKVMALAMEGCKAIHKVLSEEVMKHTKHL 618          
BLAST of NO03G05770 vs. NCBI_GenBank
Match: XP_002736568.1 (PREDICTED: exosome complex component RRP41-like [Saccoglossus kowalevskii])

HSP 1 Score: 136.7 bits (343), Expect = 7.700e-29
Identity = 81/241 (33.61%), Postives = 125/241 (51.87%), Query Frame = 0
Query:    8 EWVSLAGLRTDGRRPHELRRLRCALGF-----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQLAGAKLA 196
            E +S  G R DGRRPHELR++RC +G                                                      +RK R   DR S E+S+ +++TF+AAIL H+YPR+QIDI V VLQ+DG    A +NA +LA++DAGI M++ V AC+ +LL+D  V+D++Y E+S G   + +A  P  +Q++L Q  SRL     E+++ + + G   V  ++   VREH  +++   ++
Sbjct:    5 ELLSDQGFRADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRSKALHDKVLLNCQYSMATFSTGERKTRPKGDRRSQEMSMNLRRTFQAAILTHLYPRSQIDIYVQVLQSDGGNYCACVNAATLAVIDAGIPMRDYVCACTSSLLEDTPVVDISYLEESVGSPEMVVALLPKSEQIVLFQQNSRLHVDNLEKVLDMGIKGCTDVYGILDQSVREHVTEVSNLMMS 245          
BLAST of NO03G05770 vs. NCBI_GenBank
Match: XP_020625302.1 (exosome complex component RRP41-like [Orbicella faveolata])

HSP 1 Score: 136.7 bits (343), Expect = 7.700e-29
Identity = 82/233 (35.19%), Postives = 123/233 (52.79%), Query Frame = 0
Query:    8 EWVSLAGLRTDGRRPHELRRLRCALGF----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQ 189
            E +S  GLR DGRRPHELR++ C +G                                                     +RKKR   DR S E S+ +++TFEAAIL  +YPR+QIDI V +LQ DGS   A INA +LAL+DAGI MK+ V+AC+V  ++D+ ++D+ Y E+S GG  L LA  P   ++++ Q +SRL     E+++ +A  G   +  L++  V +++++
Sbjct:   81 EILSPEGLRLDGRRPHELRKIVCRMGVFKQADGSAYIEMGNTKALATVYGPHEVTNKAKILHDRVLLNCQFSMATFSTGERKKRPKGDRRSTETSMLIRRTFEAAILTQLYPRSQIDIYVQILQADGSNQSACINAATLALIDAGIPMKDYVSACTVGFINDKPLMDINYLEESFGGPQLGLAVLPKSGKIVMFQMDSRLHVDNLEKVLDLAKKGCTDIHILLRQTVHDYSQE 313          
BLAST of NO03G05770 vs. NCBI_GenBank
Match: XP_002677284.1 (predicted protein [Naegleria gruberi] >EFC44540.1 predicted protein [Naegleria gruberi])

HSP 1 Score: 136.3 bits (342), Expect = 1.000e-28
Identity = 80/238 (33.61%), Postives = 122/238 (51.26%), Query Frame = 0
Query:    8 EWVSLAGLRTDGRRPHELRRLRCALGF----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQLAGAK 194
            E++S  GLR DGRR HE+R ++  L                                                      +RK++   DR S E+S+ ++QTFE+ IL H+YPRTQIDI + VLQ DG    A INA +LAL+DAGI MK+ V +C+   +    + D+ Y E  +GG  +P+A  P HD+V LLQ +S+L   +FE+++  A+ G +Q+  ++  Q+++HT  L   +
Sbjct:    6 EYISPEGLRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAIINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVLQADGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGSPLTDLNYIEDCAGGPDVPIALLPKHDKVTLLQMDSKLSLDQFEKVLEHAIEGCKQIHKVIDEQLKKHTYALVNKR 243          
BLAST of NO03G05770 vs. NCBI_GenBank
Match: XP_022796306.1 (exosome complex component RRP41-like isoform X1 [Stylophora pistillata] >XP_022796307.1 exosome complex component RRP41-like isoform X2 [Stylophora pistillata])

HSP 1 Score: 136.3 bits (342), Expect = 1.000e-28
Identity = 81/233 (34.76%), Postives = 123/233 (52.79%), Query Frame = 0
Query:    8 EWVSLAGLRTDGRRPHELRRLRCALGF----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQ 189
            E +S  GLR DGRRPHELR++ C +G                                                     +RKKR   DR S E S+ +++TF+AAIL  +YPR+QIDI V +LQ DGS   A INA +LAL+DAGI MK+ ++AC+V+ ++D  ++D+ Y E+S GG  L LA  P    +++ Q +SRL     E+++ +A  G   +  L++  VR+++++
Sbjct:    5 EILSPEGLRLDGRRPHELRKMVCRMGVFKQAGGSAYIEMGNTKALATVYGPHEVTNKSKILHDRVLLNCQFSMATFSTGERKKRPKGDRRSTETSMLIRRTFDAAILTQLYPRSQIDIYVQILQADGSNQSACINAATLALIDAGIPMKDYISACTVSFVNDTPLMDINYLEESFGGPQLSLAVLPKSGNIVMFQMDSRLHVDNLEKVLDLAKKGCSDIHILLRQTVRDYSQE 237          
BLAST of NO03G05770 vs. NCBI_GenBank
Match: BAT92754.1 (hypothetical protein VIGAN_07158100 [Vigna angularis var. angularis])

HSP 1 Score: 135.6 bits (340), Expect = 1.700e-28
Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = 0
Query:    8 EWVSLAGLRTDGRRPHELRRLRCALGF---------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQL 190
            E+VS  GLR DGRRP E+R++R  +G                                        DR ++   DR S E+SL ++QT EA+IL H+ PR+QIDI V VLQ DG    A INA +LAL DAGI M+++V +CS   L+  ++LD+ Y E S+GG  + L   P  D+V LLQ +S+L     E ++ +A+ G + +A+ ++  + E+TKQL
Sbjct:    2 EYVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAMFEMGNTKVIAAVYGPREVRCEYSMANFSTRDRMRKSKGDRRSTEISLVIRQTMEASILTHLLPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTSLLDLNYVEDSAGGPDVTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREILLENTKQL 222          
The following BLAST results are available for this feature:
BLAST of NO03G05770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854552.14.900e-6858.47exosome complex component RRP41 [Nannochloropsis g... [more]
CBJ26180.11.000e-3639.33conserved unknown protein [Ectocarpus siliculosus][more]
XP_013418239.14.100e-3036.80exosome complex component RRP41 [Lingula anatina][more]
GAQ84546.11.200e-2936.603'-5'-exoribonuclease family protein [Klebsormidiu... [more]
PRP80920.12.000e-2935.90hypothetical protein PROFUN_11361 [Planoprotosteli... [more]
XP_002736568.17.700e-2933.61PREDICTED: exosome complex component RRP41-like [S... [more]
XP_020625302.17.700e-2935.19exosome complex component RRP41-like [Orbicella fa... [more]
XP_002677284.11.000e-2833.61predicted protein [Naegleria gruberi] >EFC44540.1 ... [more]
XP_022796306.11.000e-2834.76exosome complex component RRP41-like isoform X1 [S... [more]
BAT92754.11.700e-2837.56hypothetical protein VIGAN_07158100 [Vigna angular... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005288NSK005288Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05770.1NO03G05770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573494gene_1790Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100225g3gene596Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05770.1NO03G05770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05770 ID=NO03G05770|Name=NO03G05770|organism=Nannochloropsis oceanica|type=gene|length=753bp
ATGAGCAAGCGCGGCGCGGGGGAATGGGTCTCCCTCGCAGGCCTGCGGAC
AGATGGACGACGCCCGCACGAGCTGCGACGCCTGCGCTGTGCCCTAGgta
cgaatccgcacgcagatggctcggcgtctctggagcaggggcagacgcaa
gtccttgccatcgtccacggcccgcacgagccgacccggcgcagtgaggc
ccttcacgacaagtgcatcattgaatgcgaattctacaatacacctttcg
cagGTTTCGACCGCAAGAAGCGCCGGGCGACAGACCGTGCTAGCTTAGAG
GTGTCCTTGACCGTGAAGCAGACGTTCGAGGCGGCCATCTTGCGGCATAT
CTACCCGCGCACGCAAATTGACATTCAGGTGTATGTCCTACAGACGGACG
GATCCGCCCTGCCCGCCGTCATCAACGCCGTTTCCCTCGCTCTAGTGGAC
GCGGGCATTGCCATGAAAGAGATGGTTGCCGCCTGCTCAGTGGCCCTGCT
TGACGACCAGGCCGTGCTGGACGTGACGTACAAGGAGCAGAGCTCGGGCG
GTGCCTACCTGCCCCTGGCCGCCTTCCCCGCTCATGATCAGGTGCTGCTC
CTGCAGTGCGAGTCCCGCCTGGACGGTGCACGTTTCGAGGAGCTTATAGG
TGTGGCTTTGGGGGGCACACGGCAGGTGGCGGACCTGATGCAGGCCCAGG
TCAGGGAACACACCAAGCAGTTGGCGGGAGCCAAACTCGCCCTGTTGCGG
TAG
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protein sequence of NO03G05770.1

>NO03G05770.1-protein ID=NO03G05770.1-protein|Name=NO03G05770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MSKRGAGEWVSLAGLRTDGRRPHELRRLRCALGFDRKKRRATDRASLEVS
LTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAG
IAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQ
CESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQLAGAKLALLR*
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Synonyms
Publications