NO03G05770, NO03G05770 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO03G05770 vs. NCBI_GenBank
Match: XP_005854552.1 (exosome complex component RRP41 [Nannochloropsis gaditana CCMP526] >EKU21808.1 exosome complex component RRP41 [Nannochloropsis gaditana CCMP526] >EWM30053.1 exosome complex exonuclease rrp41 [Nannochloropsis gaditana]) HSP 1 Score: 266.9 bits (681), Expect = 4.900e-68 Identity = 145/248 (58.47%), Postives = 172/248 (69.35%), Query Frame = 0 Query: 3 KRGAGEWVSLAGLRTDGRRPHELRRLRCAL----------------------------------------------------GFDRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQLAGAKLALLR 199 +RGAGEWVSLAGLRTDGRRP+ELRR+ C L GFDRKKRR TDRASLE SL +KQTFE A++R++YPRTQ+DIQVYVLQ DGS LP INAVSLALVDAG+AMKEMV ACSVALLD Q VLDVTYKEQSSGGAY+PLAAFP H +++L+QCE+RL+G R EE++ A+ G+RQV+ L Q QV+E+T++LAGA+LAL R Sbjct: 2 RRGAGEWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGARLALPR 249
BLAST of NO03G05770 vs. NCBI_GenBank
Match: CBJ26180.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 162.9 bits (411), Expect = 1.000e-36 Identity = 94/239 (39.33%), Postives = 132/239 (55.23%), Query Frame = 0 Query: 8 EWVSLAGLRTDGRRPHELRRLRCALGF----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQLAGAKL 195 +++SLAGLR DGRR E+RR+R G +RKKRR T+R +E++L VK+ FE AI+ H+YPRTQIDI ++V+Q+DG LP INA SLALVDAG+AM ++V ACS LD V+D+ Y EQ+ GG YLP+A P D++LL + ESRL FEE++ A +QV ++++A V+EH L +++ Sbjct: 6 DFISLAGLRPDGRRGREIRRVRSRFGVFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIVNCEYNVAPFSGSERKKRRPTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGGVLPVGINAASLALVDAGVAMSDLVVACSAGYLDGMPVMDLNYVEQALGGPYLPVAVLPEKDKLLLAKMESRLPLEIFEEVLRAATDACQQVHEVLRAAVKEHAGALLSSQI 244
BLAST of NO03G05770 vs. NCBI_GenBank
Match: XP_013418239.1 (exosome complex component RRP41 [Lingula anatina]) HSP 1 Score: 141.0 bits (354), Expect = 4.100e-30 Identity = 85/231 (36.80%), Postives = 121/231 (52.38%), Query Frame = 0 Query: 8 EWVSLAGLRTDGRRPHELRRLRCALGF-----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREH 186 E +S G R DGRRPHELRR++C +G +RK+R DR S E++ ++QTFEAA+L H+YPR+QIDI V VLQ+DG A +NA +LA++DAGI MK+ V ACS + ++D V+D+ Y E+SSG A L +A P +Q++LLQ SRL +++ +A G + V ++ VREH Sbjct: 5 ELLSDQGFRIDGRRPHELRRIQCRMGVFGQAEGSAYVEQGNTKVLAAVYGPHEIRGSRGKMQPDKVLINCQYSMATFSTGERKRRPRGDRKSQEMTKHLQQTFEAAVLTHLYPRSQIDIFVEVLQSDGGNYCASVNAATLAIIDAGIPMKDYVCACSASYIEDNPVVDINYLEESSGSAELIMAMLPKSEQIVLLQMNSRLHEDNLSKVMDMATQGCKDVHSILDTAVREH 235
BLAST of NO03G05770 vs. NCBI_GenBank
Match: GAQ84546.1 (3'-5'-exoribonuclease family protein [Klebsormidium nitens]) HSP 1 Score: 139.4 bits (350), Expect = 1.200e-29 Identity = 86/235 (36.60%), Postives = 125/235 (53.19%), Query Frame = 0 Query: 8 EWVSLAGLRTDGRRPHELRRLRCALGF----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQLA 191 E+VS GLR DGRRP E+R+L+C L +R++R DR S+E+SL ++Q+ EAAIL H+ PRTQIDI V VLQ DG A INA +LAL DAG+ M+++VA+C+ L+ +LD+ Y E S+GG L +A P ++V LLQ +S+L FE ++G+A+ G + +A M+ + EHT++ A Sbjct: 2 EYVSPEGLRLDGRRPKEVRQLKCELAVLHRADGSAYLEMGNTKVLATVYGPHEVSQRSQSLHDRALVHCEYSMATFSTGERRRRPKGDRRSVELSLVIRQSMEAAILTHLLPRTQIDIYVQVLQADGGTRAACINAATLALADAGVPMRDLVASCAAGYLNGTPLLDLNYVEDSAGGPDLTVALLPKAEKVTLLQMDSKLPLDTFEAVLGLAMDGCKAIAAHMRQALLEHTRKQA 236
BLAST of NO03G05770 vs. NCBI_GenBank
Match: PRP80920.1 (hypothetical protein PROFUN_11361 [Planoprotostelium fungivorum]) HSP 1 Score: 138.7 bits (348), Expect = 2.000e-29 Identity = 84/234 (35.90%), Postives = 121/234 (51.71%), Query Frame = 0 Query: 8 EWVSLAGLRTDGRRPHELRRLRCALGF----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQL 190 E++S GLR DGRRP ELRR+RC L +RKKR DR S E+SL +K+TFE+ I+ ++PR+QIDI V VLQ DG A INA +LAL+DAGI MK+ V AC+ ++ +LD+ Y E S+GG +PLA P + +LQ +S+L FE+++ +A+ G + + ++ +V +HTK L Sbjct: 385 EYISPDGLRLDGRRPEELRRIRCQLAVFSRANGSAYFEQGNTKVIAAVYGPRDVGNKTKALHDRAIINCEYSMATFSTGERKKRSKGDRRSAEISLVIKKTFESVIVTTLFPRSQIDIFVQVLQADGGTRCASINAATLALIDAGIPMKDFVCACAAGCIEGTPLLDLNYIEDSAGGPDVPLALLPQTQTIAMLQMDSKLPIETFEKVMALAMEGCKAIHKVLSEEVMKHTKHL 618
BLAST of NO03G05770 vs. NCBI_GenBank
Match: XP_002736568.1 (PREDICTED: exosome complex component RRP41-like [Saccoglossus kowalevskii]) HSP 1 Score: 136.7 bits (343), Expect = 7.700e-29 Identity = 81/241 (33.61%), Postives = 125/241 (51.87%), Query Frame = 0 Query: 8 EWVSLAGLRTDGRRPHELRRLRCALGF-----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQLAGAKLA 196 E +S G R DGRRPHELR++RC +G +RK R DR S E+S+ +++TF+AAIL H+YPR+QIDI V VLQ+DG A +NA +LA++DAGI M++ V AC+ +LL+D V+D++Y E+S G + +A P +Q++L Q SRL E+++ + + G V ++ VREH +++ ++ Sbjct: 5 ELLSDQGFRADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRSKALHDKVLLNCQYSMATFSTGERKTRPKGDRRSQEMSMNLRRTFQAAILTHLYPRSQIDIYVQVLQSDGGNYCACVNAATLAVIDAGIPMRDYVCACTSSLLEDTPVVDISYLEESVGSPEMVVALLPKSEQIVLFQQNSRLHVDNLEKVLDMGIKGCTDVYGILDQSVREHVTEVSNLMMS 245
BLAST of NO03G05770 vs. NCBI_GenBank
Match: XP_020625302.1 (exosome complex component RRP41-like [Orbicella faveolata]) HSP 1 Score: 136.7 bits (343), Expect = 7.700e-29 Identity = 82/233 (35.19%), Postives = 123/233 (52.79%), Query Frame = 0 Query: 8 EWVSLAGLRTDGRRPHELRRLRCALGF----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQ 189 E +S GLR DGRRPHELR++ C +G +RKKR DR S E S+ +++TFEAAIL +YPR+QIDI V +LQ DGS A INA +LAL+DAGI MK+ V+AC+V ++D+ ++D+ Y E+S GG L LA P ++++ Q +SRL E+++ +A G + L++ V +++++ Sbjct: 81 EILSPEGLRLDGRRPHELRKIVCRMGVFKQADGSAYIEMGNTKALATVYGPHEVTNKAKILHDRVLLNCQFSMATFSTGERKKRPKGDRRSTETSMLIRRTFEAAILTQLYPRSQIDIYVQILQADGSNQSACINAATLALIDAGIPMKDYVSACTVGFINDKPLMDINYLEESFGGPQLGLAVLPKSGKIVMFQMDSRLHVDNLEKVLDLAKKGCTDIHILLRQTVHDYSQE 313
BLAST of NO03G05770 vs. NCBI_GenBank
Match: XP_002677284.1 (predicted protein [Naegleria gruberi] >EFC44540.1 predicted protein [Naegleria gruberi]) HSP 1 Score: 136.3 bits (342), Expect = 1.000e-28 Identity = 80/238 (33.61%), Postives = 122/238 (51.26%), Query Frame = 0 Query: 8 EWVSLAGLRTDGRRPHELRRLRCALGF----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQLAGAK 194 E++S GLR DGRR HE+R ++ L +RK++ DR S E+S+ ++QTFE+ IL H+YPRTQIDI + VLQ DG A INA +LAL+DAGI MK+ V +C+ + + D+ Y E +GG +P+A P HD+V LLQ +S+L +FE+++ A+ G +Q+ ++ Q+++HT L + Sbjct: 6 EYISPEGLRVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAIINCEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVLQADGGTRCACINAATLALLDAGIPMKDFVVSCAAGFIQGSPLTDLNYIEDCAGGPDVPIALLPKHDKVTLLQMDSKLSLDQFEKVLEHAIEGCKQIHKVIDEQLKKHTYALVNKR 243
BLAST of NO03G05770 vs. NCBI_GenBank
Match: XP_022796306.1 (exosome complex component RRP41-like isoform X1 [Stylophora pistillata] >XP_022796307.1 exosome complex component RRP41-like isoform X2 [Stylophora pistillata]) HSP 1 Score: 136.3 bits (342), Expect = 1.000e-28 Identity = 81/233 (34.76%), Postives = 123/233 (52.79%), Query Frame = 0 Query: 8 EWVSLAGLRTDGRRPHELRRLRCALGF----------------------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQ 189 E +S GLR DGRRPHELR++ C +G +RKKR DR S E S+ +++TF+AAIL +YPR+QIDI V +LQ DGS A INA +LAL+DAGI MK+ ++AC+V+ ++D ++D+ Y E+S GG L LA P +++ Q +SRL E+++ +A G + L++ VR+++++ Sbjct: 5 EILSPEGLRLDGRRPHELRKMVCRMGVFKQAGGSAYIEMGNTKALATVYGPHEVTNKSKILHDRVLLNCQFSMATFSTGERKKRPKGDRRSTETSMLIRRTFDAAILTQLYPRSQIDIYVQILQADGSNQSACINAATLALIDAGIPMKDYISACTVSFVNDTPLMDINYLEESFGGPQLSLAVLPKSGNIVMFQMDSRLHVDNLEKVLDLAKKGCSDIHILLRQTVRDYSQE 237
BLAST of NO03G05770 vs. NCBI_GenBank
Match: BAT92754.1 (hypothetical protein VIGAN_07158100 [Vigna angularis var. angularis]) HSP 1 Score: 135.6 bits (340), Expect = 1.700e-28 Identity = 83/221 (37.56%), Postives = 121/221 (54.75%), Query Frame = 0 Query: 8 EWVSLAGLRTDGRRPHELRRLRCALGF---------------------------------------DRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQL 190 E+VS GLR DGRRP E+R++R +G DR ++ DR S E+SL ++QT EA+IL H+ PR+QIDI V VLQ DG A INA +LAL DAGI M+++V +CS L+ ++LD+ Y E S+GG + L P D+V LLQ +S+L E ++ +A+ G + +A+ ++ + E+TKQL Sbjct: 2 EYVSPEGLRLDGRRPMEMRQIRAEIGAVSKADGSAMFEMGNTKVIAAVYGPREVRCEYSMANFSTRDRMRKSKGDRRSTEISLVIRQTMEASILTHLLPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTSLLDLNYVEDSAGGPDVTLGILPKLDKVTLLQMDSKLPIDILENVMQLAIEGCKAIANYIREILLENTKQL 222 The following BLAST results are available for this feature:
BLAST of NO03G05770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO03G05770 ID=NO03G05770|Name=NO03G05770|organism=Nannochloropsis oceanica|type=gene|length=753bpback to top protein sequence of NO03G05770.1 >NO03G05770.1-protein ID=NO03G05770.1-protein|Name=NO03G05770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=199bpback to top Synonyms
Publications
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