NO03G05770.1, NO03G05770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05770.1
Unique NameNO03G05770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length597
Alignment locationchr3:1656722..1657474 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1656722..1657474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05770.1 vs.
Match: XP_005854552.1 (exosome complex component RRP41 [Nannochloropsis gaditana CCMP526]; EKU21808.1 exosome complex component RRP41 [Nannochloropsis gaditana CCMP526]; EWM30053.1 exosome complex exonuclease rrp41 [Nannochloropsis gaditana])

HSP 1 Score: 264.6 bits (675), Expect = 2.400e-67
Identity = 144/248 (58.06%), Postives = 171/248 (68.95%), Query Frame = 0 
Query:    3 KRGAGEWVSLAGLRTDGRRPHELRRLRCA----------------------------------------------------LGFDRKKRRATDRASLEVSLTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAGIAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQCESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQLAGAKLALLR 199
            +RGAGEWVSLAGLRTDGRRP+ELRR+ C                                                      GFDRKKRR TDRASLE SL +KQTFE A++R++YPRTQ+DIQVYVLQ DGS LP  INAVSLALVDAG+AMKEMV ACSVALLD Q VLDVTYKEQSSGGAY+PLAAFP H +++L+QCE+RL+G R EE++  A+ G+RQV+ L Q QV+E+T++LAGA+LAL R
Sbjct:    2 RRGAGEWVSLAGLRTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIECEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGSILPTAINAVSLALVDAGVAMKEMVTACSVALLDKQPVLDVTYKEQSSGGAYMPLAAFPIHGEIILIQCEARLEGERLEEMMLTAMEGSRQVSQLFQTQVKEYTRRLAGARLALPR 249
The following BLAST results are available for this feature:
BLAST of NO03G05770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854552.12.400e-6758.06exosome complex component RRP41 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05770NO03G05770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05770.1NO03G05770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05770.1.cds1NO03G05770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO03G05770.1.cds2NO03G05770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05770.1 ID=NO03G05770.1|Name=NO03G05770.1|organism=Nannochloropsis oceanica|type=mRNA|length=597bp
ATGAGCAAGCGCGGCGCGGGGGAATGGGTCTCCCTCGCAGGCCTGCGGAC
AGATGGACGACGCCCGCACGAGCTGCGACGCCTGCGCTGTGCCCTAGGTT
TCGACCGCAAGAAGCGCCGGGCGACAGACCGTGCTAGCTTAGAGGTGTCC
TTGACCGTGAAGCAGACGTTCGAGGCGGCCATCTTGCGGCATATCTACCC
GCGCACGCAAATTGACATTCAGGTGTATGTCCTACAGACGGACGGATCCG
CCCTGCCCGCCGTCATCAACGCCGTTTCCCTCGCTCTAGTGGACGCGGGC
ATTGCCATGAAAGAGATGGTTGCCGCCTGCTCAGTGGCCCTGCTTGACGA
CCAGGCCGTGCTGGACGTGACGTACAAGGAGCAGAGCTCGGGCGGTGCCT
ACCTGCCCCTGGCCGCCTTCCCCGCTCATGATCAGGTGCTGCTCCTGCAG
TGCGAGTCCCGCCTGGACGGTGCACGTTTCGAGGAGCTTATAGGTGTGGC
TTTGGGGGGCACACGGCAGGTGGCGGACCTGATGCAGGCCCAGGTCAGGG
AACACACCAAGCAGTTGGCGGGAGCCAAACTCGCCCTGTTGCGGTAG
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protein sequence of NO03G05770.1

>NO03G05770.1-protein ID=NO03G05770.1-protein|Name=NO03G05770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MSKRGAGEWVSLAGLRTDGRRPHELRRLRCALGFDRKKRRATDRASLEVS
LTVKQTFEAAILRHIYPRTQIDIQVYVLQTDGSALPAVINAVSLALVDAG
IAMKEMVAACSVALLDDQAVLDVTYKEQSSGGAYLPLAAFPAHDQVLLLQ
CESRLDGARFEELIGVALGGTRQVADLMQAQVREHTKQLAGAKLALLR*
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mRNA from alignment at chr3:1656722..1657474+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05770.1 ID=NO03G05770.1|Name=NO03G05770.1|organism=Nannochloropsis oceanica|type=mRNA|length=753bp|location=Sequence derived from alignment at chr3:1656722..1657474+ (Nannochloropsis oceanica)
ATGAGCAAGCGCGGCGCGGGGGAATGGGTCTCCCTCGCAGGCCTGCGGAC
AGATGGACGACGCCCGCACGAGCTGCGACGCCTGCGCTGTGCCCTAGGTA
CGAATCCGCACGCAGATGGCTCGGCGTCTCTGGAGCAGGGGCAGACGCAA
GTCCTTGCCATCGTCCACGGCCCGCACGAGCCGACCCGGCGCAGTGAGGC
CCTTCACGACAAGTGCATCATTGAATGCGAATTCTACAATACACCTTTCG
CAGGTTTCGACCGCAAGAAGCGCCGGGCGACAGACCGTGCTAGCTTAGAG
GTGTCCTTGACCGTGAAGCAGACGTTCGAGGCGGCCATCTTGCGGCATAT
CTACCCGCGCACGCAAATTGACATTCAGGTGTATGTCCTACAGACGGACG
GATCCGCCCTGCCCGCCGTCATCAACGCCGTTTCCCTCGCTCTAGTGGAC
GCGGGCATTGCCATGAAAGAGATGGTTGCCGCCTGCTCAGTGGCCCTGCT
TGACGACCAGGCCGTGCTGGACGTGACGTACAAGGAGCAGAGCTCGGGCG
GTGCCTACCTGCCCCTGGCCGCCTTCCCCGCTCATGATCAGGTGCTGCTC
CTGCAGTGCGAGTCCCGCCTGGACGGTGCACGTTTCGAGGAGCTTATAGG
TGTGGCTTTGGGGGGCACACGGCAGGTGGCGGACCTGATGCAGGCCCAGG
TCAGGGAACACACCAAGCAGTTGGCGGGAGCCAAACTCGCCCTGTTGCGG
TAG
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Coding sequence (CDS) from alignment at chr3:1656722..1657474+

>NO03G05770.1 ID=NO03G05770.1|Name=NO03G05770.1|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at chr3:1656722..1657474+ (Nannochloropsis oceanica)
ATGAGCAAGCGCGGCGCGGGGGAATGGGTCTCCCTCGCAGGCCTGCGGAC
AGATGGACGACGCCCGCACGAGCTGCGACGCCTGCGCTGTGCCCTAGGTT
TCGACCGCAAGAAGCGCCGGGCGACAGACCGTGCTAGCTTAGAGGTGTCC
TTGACCGTGAAGCAGACGTTCGAGGCGGCCATCTTGCGGCATATCTACCC
GCGCACGCAAATTGACATTCAGGTGTATGTCCTACAGACGGACGGATCCG
CCCTGCCCGCCGTCATCAACGCCGTTTCCCTCGCTCTAGTGGACGCGGGC
ATTGCCATGAAAGAGATGGTTGCCGCCTGCTCAGTGGCCCTGCTTGACGA
CCAGGCCGTGCTGGACGTGACGTACAAGGAGCAGAGCTCGGGCGGTGCCT
ACCTGCCCCTGGCCGCCTTCCCCGCTCATGATCAGGTGCTGCTCCTGCAG
TGCGAGTCCCGCCTGGACGGTGCACGTTTCGAGGAGCTTATAGGTGTGGC
TTTGGGGGGCACACGGCAGGTGGCGGACCTGATGCAGGCCCAGGTCAGGG
AACACACCAAGCAGTTGGCGGGAGCCAAACTCGCCCTGTTGCGGTAG
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Synonyms
Publications