NO03G05420, NO03G05420 (gene) Nannochloropsis oceanica

Overview
NameNO03G05420
Unique NameNO03G05420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1105
Alignment locationchr3:1543318..1544422 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1543318..1544422 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G05420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005330NSK005330Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05420.1NO03G05420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667621gene_1757Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100425g4gene643Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05420.1NO03G05420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05420 ID=NO03G05420|Name=NO03G05420|organism=Nannochloropsis oceanica|type=gene|length=1105bp
CGCACGCGACAGCTGGACCTTGTCCCCTTTCCCTTCTCTGCTTGTCCCTA
TGCACAAAGCACTGAATCTGCCTCAAACCCTACGTATAACTCATCACCTC
CTTTACGATACCATGATTGGTTCCTTTGCTTGCCCCCACCCTCGACCTTC
ATGAGTTTTTTCGAGCAACTCCGGTGTCTTCCACTTATGTCACAAATGCA
GTCATCAAGCTGAAGTCCCATTCAAATCCTGCCCATTTACACATCCACAG
CCACACAACTACTGTTCCCTCTTCAACAGAGCATTCCGAGCATGGTCGGT
GCTCTCGTCCTTGGGCGCTACGTGGCCGTCGCAAGCGCAACACGGCCCTT
GACCCTCCTGGCGTTCCCTGCTTACTATACGCGTTCCCTAACTGCCGATG
TGCACCAAAATCCCGCACAAGACCCCGATGAGGCGCATCAGGAGAGAAAA
TCGGCGGAAATGGAGCGGAGAATGCAAGCGCTCAAACGATTTGGTCTCCC
TAAGGCAATGGACGATAAGGTCATGTTGCCACAGGGCAAGCCGGTTGAGG
CAGGCGGGAAAAAGGAGCACGGGAAGGAGGAGGAAACACAGGATTGGAAC
GCGATCTACGGGGATTATATCTGGTACAGGGATAACCAGACGACCAAGGG
ATGGAAGAGCTGAGCAACCAAGGCAAGATTGGAAAGGAGGCATCGAGGAA
GTGAGGGAAGGGAGGCTGGGAGATAGGGGAACAAAGCTTGCATGATAAAT
TGACAACGAGCAGTTGTGACAACGTTGCGCGATACGAGAAATGAGGTCGA
CTCGAAAATTCTTTTGGAATACTGGCAGGGCAAAAATTTATGACTCGAAC
AGATTGGGAACGGTCGCATGAGGGCACGAGTACGAGGGCTGTGTGACATG
TACATGTTGGTGAAAATACGGGCTTGTGGACGGCCACGTAAAAGCAGATC
GGGGTCACGGAGGGCATGATTTGTTCGATACATGTATGATTAAAATTTAT
ATGGTTGTAGTTGAGTGCGAGCGAAGCCGAGAACCGTCGGTTAGCTTTCA
CGAGAGAGTTTAAAGAAATGAAGGAAATCTATAAATCAAAATAATCGAAC
TAGTT
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protein sequence of NO03G05420.1

>NO03G05420.1-protein ID=NO03G05420.1-protein|Name=NO03G05420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MVGALVLGRYVAVASATRPLTLLAFPAYYTRSLTADVHQNPAQDPDEAHQ
ERKSAEMERRMQALKRFGLPKAMDDKVMLPQGKPVEAGGKKEHGKEEETQ
DWNAIYGDYIWYRDNQTTKGWKS*
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Synonyms
Publications