NO03G05210, NO03G05210 (gene) Nannochloropsis oceanica

Overview
NameNO03G05210
Unique NameNO03G05210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1653
Alignment locationchr3:1486971..1488623 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1486971..1488623 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO03G05210 vs. NCBI_GenBank
Match: EWM29964.1 (hypothetical protein Naga_100200g1 [Nannochloropsis gaditana])

HSP 1 Score: 338.6 bits (867), Expect = 3.700e-89
Identity = 262/561 (46.70%), Postives = 314/561 (55.97%), Query Frame = 0 
Query:    2 TFFQDKHRFDPHYARFVWQLLGAL----SSLPXXXXXXXXXXXHLRAYGAGLRFVLEVLIHGRASSCLPLWFQTLHSLLLQPDEDGDEDEGRRDGGREGRVRRCGLWTLMYLADDPQGRKEGMQALLSCPHLPSRREVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRGLLELREGGRE------LAHPLARLVAWYLVVITHCAGTDGWLFSPPLTEAEEEAGRREGGPH---TNVFASSSTGMRAGSISF----NITPEVLLLLLELASLGPALRQLLRSLGGIGRLAALVASVNGGDNRHLL--PNFPLLAQEVIALALRLLATLAEDASPNELHSPFHLSTLSSRRFVEMAATLHPQDTSLLLAKFVAMTAPSSSLDPSHLI---IDQQQNVAAATAAVIRVLVDRALEATALVSQPPAPLPAFTSFPNPSPSYAMYMEHQRRLIALGPKPLLRVLQAVLGV----AGEGGREGEEQQTWRLEQSLSLLDQCSRLMAR----------XXXXXXXXXXXXXXXXXXMDLVWGVAKLYFSLAARSPVATKFVRTRV 527
            +F +DKH FDPHYARF+W+LL       SSLPXXXXXXXXXXX LRAY AGL++V  VLIH RA S LP W  TL S+L    E                  +CGLWTL+Y ADDP GR  G+  LL CP+ PS R                                  GLL +REG  E      LAHPLARL+  YLVV+T  AG DG  F     E     G    GP    T    +   G R G +      +ITPEVLLLL+E A  GP LR LLR+LGGI R+AALV S+NGGDN HL   PN  +  Q +++L+LRLL  L  +A P +L  P HL  LSSRRFVE+AATLHP  TS++LAK   + +  SS  PS L        Q V  A A V+ VLVDR +EA AL  QP A     +S P PS S    + + + L+  G +PLLRVL+AVLG       EGGRE  E + WRLE S+ L+ QCS ++ R          XXXXXXXXXXXX      MDL+W V +LYF+LAARSPVAT F+  +V
Sbjct:  168 SFCRDKHMFDPHYARFLWELLQVAQPGSSSLPXXXXXXXXXXXGLRAYAAGLQYVWNVLIHARALSSLPSWLATLRSIL--HGEXXXXXXXXXXXXXXXLSGQCGLWTLLYFADDPDGRTAGLDCLLLCPY-PSTRLALVSLIVEAIPQVDK-----------------TGLLAVREGSGEGGSEDGLAHPLARLMGLYLVVVTEAAGVDGRDFFASRWEGISIPGGAPVGPSSWLTGDAGAQGEGGREGGMEMEATPSITPEVLLLLVEAAGQGPDLRALLRTLGGIARVAALVVSLNGGDNAHLFTRPNLLVRGQGILSLSLRLLGMLVAEALPEDLQRPSHLRVLSSRRFVELAATLHPDLTSVILAKLTTVPSLPSSF-PSSLSPRPSSDCQRVRVAIADVVGVLVDRTIEAAAL--QPQA-----SSLPPPSRSSVSLLSYPQSLVVPGARPLLRVLEAVLGPRQGRGREGGRENAEVEQWRLELSMPLIHQCSAVLRRVAEGRRGXXXXXXXXXXXXXXXELSEGEMDLIWQVTRLYFALAARSPVATAFMAAKV 700
The following BLAST results are available for this feature:
BLAST of NO03G05210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29964.13.700e-8946.70hypothetical protein Naga_100200g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL069nonsL069Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR054ngnoR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G05210.1NO03G05210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|627025gene_1733Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100200g1gene680Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G05210.1NO03G05210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G05210 ID=NO03G05210|Name=NO03G05210|organism=Nannochloropsis oceanica|type=gene|length=1653bp
ATGACGTTCTTTCAGGACAAGCATCGTTTCGATCCTCACTACGCCCGCTT
TGTCTGGCAGCTCCTCGGTGCCCTCTCCTCCCTCCCTCCCTCGTCCTCCT
CCTCCACGGCAGCAGCTGCTCATTTGAGGGCGTACGGCGCGGGCCTTCGC
TTCGTTTTGGAGGTGTTAATACATGGTCGTGCCTCCTCCTGCCTCCCTCT
CTGGTTTCAAACCCTTCATTCCCTCCTCCTCCAACCCGACGAGGACGGGG
ATGAGGACGAAGGCAGGAGGGACGGCGGGAGGGAGGGAAGGGTGCGGAGG
TGCGGATTGTGGACGTTGATGTACTTGGCAGATGACCCTCAGGGAAGGAA
GGAGGGGATGCAGGCCCTCCTGTCCTGCCCTCATCTCCCCAGTCGTCGGG
AAGTGGTGCGTTTGGTGGTGGCGGCAGCGAAGGAGGTGGTACAAGGAAGA
GGAGGAGGAGCAGCAGCAGCAGGAGGAGGAGACGGAGGGGGAGGAATAAG
AGGGTTGCTGGAATTGAGAGAGGGAGGGAGGGAGTTGGCGCATCCCTTGG
CCAGGTTGGTGGCGTGGTATTTGGTGGTGATCACGCATTGTGCCGGGACA
GATGGTTGGCTCTTCTCGCCTCCGCTTACCGAAGCGGAGGAGGAGGCAGG
AAGGAGGGAGGGAGGGCCTCATACCAATGTATTCGCCTCTTCATCGACAG
GGATGAGGGCAGGAAGCATTTCCTTCAACATTACTCCGGAGGTACTTCTC
CTCCTGCTGGAGCTGGCCTCCCTCGGCCCCGCCCTCCGTCAGCTCCTCCG
CAGCCTGGGAGGAATCGGACGTCTAGCTGCCCTGGTCGCTTCCGTTAATG
GTGGCGATAATCGTCACCTCCTCCCCAACTTTCCCCTGCTTGCCCAGGAG
GTCATCGCTCTCGCCCTTCGTCTCCTTGCTACCTTAGCTGAAGATGCCTC
TCCGAACGAGCTTCACTCCCCCTTCCATCTCTCCACGCTTTCCTCCCGCC
GCTTTGTCGAAATGGCAGCGACGCTCCACCCTCAAGATACCTCCCTCCTC
CTGGCCAAGTTTGTCGCAATGACGGCCCCCTCGTCCTCTCTCGATCCTTC
CCACCTCATCATCGACCAGCAGCAAAACGTCGCGGCCGCTACCGCTGCCG
TCATTCGTGTCCTTGTGGACCGAGCGTTGGAAGCCACTGCGCTTGTCAGT
CAGCCCCCTGCCCCCCTCCCTGCCTTTACATCCTTTCCTAACCCGTCTCC
TTCCTATGCGATGTATATGGAGCACCAACGGCGTCTGATTGCATTAGGGC
CCAAACCACTCCTGCGGGTGTTGCAGGCCGTGCTGGGAGTAGCGGGAGAG
GGAGGGAGGGAGGGAGAGGAGCAGCAGACATGGCGGCTGGAGCAGTCTCT
GTCACTGCTGGACCAATGCTCACGTTTGATGGCTCGAGGACGGGGTGGAG
TGGAAGGGAGGGGGGGAGGGAGGGGGGAATATGGAGGAGAGATGGATTTG
GTATGGGGTGTGGCTAAATTGTATTTTTCTTTGGCGGCACGATCACCCGT
GGCAACGAAATTTGTGCGGACAAGAGTGGAGAGAGTGGTGAGGGAGTGGC
GGCAAATGATGGGGACGATGGGAGGGGGCGGAGGAAGAGGAGGGAAGAGG
TGA
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protein sequence of NO03G05210.1

>NO03G05210.1-protein ID=NO03G05210.1-protein|Name=NO03G05210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=551bp
MTFFQDKHRFDPHYARFVWQLLGALSSLPPSSSSSTAAAAHLRAYGAGLR
FVLEVLIHGRASSCLPLWFQTLHSLLLQPDEDGDEDEGRRDGGREGRVRR
CGLWTLMYLADDPQGRKEGMQALLSCPHLPSRREVVRLVVAAAKEVVQGR
GGGAAAAGGGDGGGGIRGLLELREGGRELAHPLARLVAWYLVVITHCAGT
DGWLFSPPLTEAEEEAGRREGGPHTNVFASSSTGMRAGSISFNITPEVLL
LLLELASLGPALRQLLRSLGGIGRLAALVASVNGGDNRHLLPNFPLLAQE
VIALALRLLATLAEDASPNELHSPFHLSTLSSRRFVEMAATLHPQDTSLL
LAKFVAMTAPSSSLDPSHLIIDQQQNVAAATAAVIRVLVDRALEATALVS
QPPAPLPAFTSFPNPSPSYAMYMEHQRRLIALGPKPLLRVLQAVLGVAGE
GGREGEEQQTWRLEQSLSLLDQCSRLMARGRGGVEGRGGGRGEYGGEMDL
VWGVAKLYFSLAARSPVATKFVRTRVERVVREWRQMMGTMGGGGGRGGKR
*
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Synonyms
Publications