NO03G05210.1, NO03G05210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G05210.1
Unique NameNO03G05210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1653
Alignment locationchr3:1486971..1488623 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:1486971..1488623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO03G05210.1 vs.
Match: EWM29964.1 (hypothetical protein Naga_100200g1 [Nannochloropsis gaditana])

HSP 1 Score: 394.0 bits (1011), Expect = 7.400e-106
Identity = 270/570 (47.37%), Postives = 333/570 (58.42%), Query Frame = 0 
Query:    2 TFFQDKHRFDPHYARFVWQLLGAL----SSLPPSSSSSTAAAAHLRAYGAGLRFVLEVLIHGRASSCLPLWFQTLHSLLLQPDEDGDEDEGRRDGGREGRVRRCGLWTLMYLADDPQGRKEGMQALLSCPHLPSRREVVRLVVAAAKEVVQGRGGGAAAAGGGDGGGGIRGLLELREGGRELAHPLARLVAWYLVVITHCAGTDGWLFSPPLTEAEEEAGRREGGPH---TNVFASSSTGMRAGSISF----NITPEVLLLLLELASLGPALRQLLRSLGGIGRLAALVASVNGGDNRHLL--PNFPLLAQEVIALALRLLATLAEDASPNELHSPFHLSTLSSRRFVEMAATLHPQDTSLLLAKFVAMTAPSSSLDPSHLI---IDQQQNVAAATAAVIRVLVDRALEATALVSQPPAPLPAFTSFPNPSPSYAMYMEHQRRLIALGPKPLLRVLQAVLGV----AGEGGREGEEQQTWRLEQSLSLLDQCS---RLMARGRGGVEGRGGGRGEYG--------GEMDLVWGVAKLYFSLAARSPVATKFVRTRVERVVREWRQMMGTM 541
            +F +DKH FDPHYARF+W+LL       SSLPPS   +   +A LRAY AGL++V  VLIH RA S LP W  TL S+L      G E  G R+GGRE    +CGLWTL+Y ADDP GR  G+  LL CP+  +R  +V L+V A  +V +  G  A   G G+GG          E G  LAHPLARL+  YLVV+T  AG DG  F     E     G    GP    T    +   G R G +      +ITPEVLLLL+E A  GP LR LLR+LGGI R+AALV S+NGGDN HL   PN  +  Q +++L+LRLL  L  +A P +L  P HL  LSSRRFVE+AATLHP  TS++LAK   + +  SS  PS L        Q V  A A V+ VLVDR +EA AL  QP A     +S P PS S    + + + L+  G +PLLRVL+AVLG       EGGRE  E + WRLE S+ L+ QCS   R +A GR G  GRG GRG  G        GEMDL+W V +LYF+LAARSPVAT F+  +V   + EWR+++  M
Sbjct:  168 SFCRDKHMFDPHYARFLWELLQVAQPGSSSLPPSLPPALPPSAGLRAYAAGLQYVWNVLIHARALSSLPSWLATLRSILHGEGNGGRE--GGREGGREALSGQCGLWTLLYFADDPDGRTAGLDCLLLCPYPSTRLALVSLIVEAIPQVDK-TGLLAVREGSGEGGS---------EDG--LAHPLARLMGLYLVVVTEAAGVDGRDFFASRWEGISIPGGAPVGPSSWLTGDAGAQGEGGREGGMEMEATPSITPEVLLLLVEAAGQGPDLRALLRTLGGIARVAALVVSLNGGDNAHLFTRPNLLVRGQGILSLSLRLLGMLVAEALPEDLQRPSHLRVLSSRRFVELAATLHPDLTSVILAKLTTVPSLPSSF-PSSLSPRPSSDCQRVRVAIADVVGVLVDRTIEAAAL--QPQA-----SSLPPPSRSSVSLLSYPQSLVVPGARPLLRVLEAVLGPRQGRGREGGRENAEVEQWRLELSMPLIHQCSAVLRRVAEGRRG-GGRGIGRGAGGGASHELSEGEMDLIWQVTRLYFALAARSPVATAFMAAKVGATMTEWRKIIKGM 714
The following BLAST results are available for this feature:
BLAST of NO03G05210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29964.17.400e-10647.37hypothetical protein Naga_100200g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G05210NO03G05210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G05210.1NO03G05210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G05210.1.cds1NO03G05210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G05210.1 ID=NO03G05210.1|Name=NO03G05210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1653bp
ATGACGTTCTTTCAGGACAAGCATCGTTTCGATCCTCACTACGCCCGCTT
TGTCTGGCAGCTCCTCGGTGCCCTCTCCTCCCTCCCTCCCTCGTCCTCCT
CCTCCACGGCAGCAGCTGCTCATTTGAGGGCGTACGGCGCGGGCCTTCGC
TTCGTTTTGGAGGTGTTAATACATGGTCGTGCCTCCTCCTGCCTCCCTCT
CTGGTTTCAAACCCTTCATTCCCTCCTCCTCCAACCCGACGAGGACGGGG
ATGAGGACGAAGGCAGGAGGGACGGCGGGAGGGAGGGAAGGGTGCGGAGG
TGCGGATTGTGGACGTTGATGTACTTGGCAGATGACCCTCAGGGAAGGAA
GGAGGGGATGCAGGCCCTCCTGTCCTGCCCTCATCTCCCCAGTCGTCGGG
AAGTGGTGCGTTTGGTGGTGGCGGCAGCGAAGGAGGTGGTACAAGGAAGA
GGAGGAGGAGCAGCAGCAGCAGGAGGAGGAGACGGAGGGGGAGGAATAAG
AGGGTTGCTGGAATTGAGAGAGGGAGGGAGGGAGTTGGCGCATCCCTTGG
CCAGGTTGGTGGCGTGGTATTTGGTGGTGATCACGCATTGTGCCGGGACA
GATGGTTGGCTCTTCTCGCCTCCGCTTACCGAAGCGGAGGAGGAGGCAGG
AAGGAGGGAGGGAGGGCCTCATACCAATGTATTCGCCTCTTCATCGACAG
GGATGAGGGCAGGAAGCATTTCCTTCAACATTACTCCGGAGGTACTTCTC
CTCCTGCTGGAGCTGGCCTCCCTCGGCCCCGCCCTCCGTCAGCTCCTCCG
CAGCCTGGGAGGAATCGGACGTCTAGCTGCCCTGGTCGCTTCCGTTAATG
GTGGCGATAATCGTCACCTCCTCCCCAACTTTCCCCTGCTTGCCCAGGAG
GTCATCGCTCTCGCCCTTCGTCTCCTTGCTACCTTAGCTGAAGATGCCTC
TCCGAACGAGCTTCACTCCCCCTTCCATCTCTCCACGCTTTCCTCCCGCC
GCTTTGTCGAAATGGCAGCGACGCTCCACCCTCAAGATACCTCCCTCCTC
CTGGCCAAGTTTGTCGCAATGACGGCCCCCTCGTCCTCTCTCGATCCTTC
CCACCTCATCATCGACCAGCAGCAAAACGTCGCGGCCGCTACCGCTGCCG
TCATTCGTGTCCTTGTGGACCGAGCGTTGGAAGCCACTGCGCTTGTCAGT
CAGCCCCCTGCCCCCCTCCCTGCCTTTACATCCTTTCCTAACCCGTCTCC
TTCCTATGCGATGTATATGGAGCACCAACGGCGTCTGATTGCATTAGGGC
CCAAACCACTCCTGCGGGTGTTGCAGGCCGTGCTGGGAGTAGCGGGAGAG
GGAGGGAGGGAGGGAGAGGAGCAGCAGACATGGCGGCTGGAGCAGTCTCT
GTCACTGCTGGACCAATGCTCACGTTTGATGGCTCGAGGACGGGGTGGAG
TGGAAGGGAGGGGGGGAGGGAGGGGGGAATATGGAGGAGAGATGGATTTG
GTATGGGGTGTGGCTAAATTGTATTTTTCTTTGGCGGCACGATCACCCGT
GGCAACGAAATTTGTGCGGACAAGAGTGGAGAGAGTGGTGAGGGAGTGGC
GGCAAATGATGGGGACGATGGGAGGGGGCGGAGGAAGAGGAGGGAAGAGG
TGA
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protein sequence of NO03G05210.1

>NO03G05210.1-protein ID=NO03G05210.1-protein|Name=NO03G05210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=551bp
MTFFQDKHRFDPHYARFVWQLLGALSSLPPSSSSSTAAAAHLRAYGAGLR
FVLEVLIHGRASSCLPLWFQTLHSLLLQPDEDGDEDEGRRDGGREGRVRR
CGLWTLMYLADDPQGRKEGMQALLSCPHLPSRREVVRLVVAAAKEVVQGR
GGGAAAAGGGDGGGGIRGLLELREGGRELAHPLARLVAWYLVVITHCAGT
DGWLFSPPLTEAEEEAGRREGGPHTNVFASSSTGMRAGSISFNITPEVLL
LLLELASLGPALRQLLRSLGGIGRLAALVASVNGGDNRHLLPNFPLLAQE
VIALALRLLATLAEDASPNELHSPFHLSTLSSRRFVEMAATLHPQDTSLL
LAKFVAMTAPSSSLDPSHLIIDQQQNVAAATAAVIRVLVDRALEATALVS
QPPAPLPAFTSFPNPSPSYAMYMEHQRRLIALGPKPLLRVLQAVLGVAGE
GGREGEEQQTWRLEQSLSLLDQCSRLMARGRGGVEGRGGGRGEYGGEMDL
VWGVAKLYFSLAARSPVATKFVRTRVERVVREWRQMMGTMGGGGGRGGKR
*
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mRNA from alignment at chr3:1486971..1488623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G05210.1 ID=NO03G05210.1|Name=NO03G05210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1653bp|location=Sequence derived from alignment at chr3:1486971..1488623+ (Nannochloropsis oceanica)
ATGACGTTCTTTCAGGACAAGCATCGTTTCGATCCTCACTACGCCCGCTT
TGTCTGGCAGCTCCTCGGTGCCCTCTCCTCCCTCCCTCCCTCGTCCTCCT
CCTCCACGGCAGCAGCTGCTCATTTGAGGGCGTACGGCGCGGGCCTTCGC
TTCGTTTTGGAGGTGTTAATACATGGTCGTGCCTCCTCCTGCCTCCCTCT
CTGGTTTCAAACCCTTCATTCCCTCCTCCTCCAACCCGACGAGGACGGGG
ATGAGGACGAAGGCAGGAGGGACGGCGGGAGGGAGGGAAGGGTGCGGAGG
TGCGGATTGTGGACGTTGATGTACTTGGCAGATGACCCTCAGGGAAGGAA
GGAGGGGATGCAGGCCCTCCTGTCCTGCCCTCATCTCCCCAGTCGTCGGG
AAGTGGTGCGTTTGGTGGTGGCGGCAGCGAAGGAGGTGGTACAAGGAAGA
GGAGGAGGAGCAGCAGCAGCAGGAGGAGGAGACGGAGGGGGAGGAATAAG
AGGGTTGCTGGAATTGAGAGAGGGAGGGAGGGAGTTGGCGCATCCCTTGG
CCAGGTTGGTGGCGTGGTATTTGGTGGTGATCACGCATTGTGCCGGGACA
GATGGTTGGCTCTTCTCGCCTCCGCTTACCGAAGCGGAGGAGGAGGCAGG
AAGGAGGGAGGGAGGGCCTCATACCAATGTATTCGCCTCTTCATCGACAG
GGATGAGGGCAGGAAGCATTTCCTTCAACATTACTCCGGAGGTACTTCTC
CTCCTGCTGGAGCTGGCCTCCCTCGGCCCCGCCCTCCGTCAGCTCCTCCG
CAGCCTGGGAGGAATCGGACGTCTAGCTGCCCTGGTCGCTTCCGTTAATG
GTGGCGATAATCGTCACCTCCTCCCCAACTTTCCCCTGCTTGCCCAGGAG
GTCATCGCTCTCGCCCTTCGTCTCCTTGCTACCTTAGCTGAAGATGCCTC
TCCGAACGAGCTTCACTCCCCCTTCCATCTCTCCACGCTTTCCTCCCGCC
GCTTTGTCGAAATGGCAGCGACGCTCCACCCTCAAGATACCTCCCTCCTC
CTGGCCAAGTTTGTCGCAATGACGGCCCCCTCGTCCTCTCTCGATCCTTC
CCACCTCATCATCGACCAGCAGCAAAACGTCGCGGCCGCTACCGCTGCCG
TCATTCGTGTCCTTGTGGACCGAGCGTTGGAAGCCACTGCGCTTGTCAGT
CAGCCCCCTGCCCCCCTCCCTGCCTTTACATCCTTTCCTAACCCGTCTCC
TTCCTATGCGATGTATATGGAGCACCAACGGCGTCTGATTGCATTAGGGC
CCAAACCACTCCTGCGGGTGTTGCAGGCCGTGCTGGGAGTAGCGGGAGAG
GGAGGGAGGGAGGGAGAGGAGCAGCAGACATGGCGGCTGGAGCAGTCTCT
GTCACTGCTGGACCAATGCTCACGTTTGATGGCTCGAGGACGGGGTGGAG
TGGAAGGGAGGGGGGGAGGGAGGGGGGAATATGGAGGAGAGATGGATTTG
GTATGGGGTGTGGCTAAATTGTATTTTTCTTTGGCGGCACGATCACCCGT
GGCAACGAAATTTGTGCGGACAAGAGTGGAGAGAGTGGTGAGGGAGTGGC
GGCAAATGATGGGGACGATGGGAGGGGGCGGAGGAAGAGGAGGGAAGAGG
TGA
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Coding sequence (CDS) from alignment at chr3:1486971..1488623+

>NO03G05210.1 ID=NO03G05210.1|Name=NO03G05210.1|organism=Nannochloropsis oceanica|type=CDS|length=1653bp|location=Sequence derived from alignment at chr3:1486971..1488623+ (Nannochloropsis oceanica)
ATGACGTTCTTTCAGGACAAGCATCGTTTCGATCCTCACTACGCCCGCTT
TGTCTGGCAGCTCCTCGGTGCCCTCTCCTCCCTCCCTCCCTCGTCCTCCT
CCTCCACGGCAGCAGCTGCTCATTTGAGGGCGTACGGCGCGGGCCTTCGC
TTCGTTTTGGAGGTGTTAATACATGGTCGTGCCTCCTCCTGCCTCCCTCT
CTGGTTTCAAACCCTTCATTCCCTCCTCCTCCAACCCGACGAGGACGGGG
ATGAGGACGAAGGCAGGAGGGACGGCGGGAGGGAGGGAAGGGTGCGGAGG
TGCGGATTGTGGACGTTGATGTACTTGGCAGATGACCCTCAGGGAAGGAA
GGAGGGGATGCAGGCCCTCCTGTCCTGCCCTCATCTCCCCAGTCGTCGGG
AAGTGGTGCGTTTGGTGGTGGCGGCAGCGAAGGAGGTGGTACAAGGAAGA
GGAGGAGGAGCAGCAGCAGCAGGAGGAGGAGACGGAGGGGGAGGAATAAG
AGGGTTGCTGGAATTGAGAGAGGGAGGGAGGGAGTTGGCGCATCCCTTGG
CCAGGTTGGTGGCGTGGTATTTGGTGGTGATCACGCATTGTGCCGGGACA
GATGGTTGGCTCTTCTCGCCTCCGCTTACCGAAGCGGAGGAGGAGGCAGG
AAGGAGGGAGGGAGGGCCTCATACCAATGTATTCGCCTCTTCATCGACAG
GGATGAGGGCAGGAAGCATTTCCTTCAACATTACTCCGGAGGTACTTCTC
CTCCTGCTGGAGCTGGCCTCCCTCGGCCCCGCCCTCCGTCAGCTCCTCCG
CAGCCTGGGAGGAATCGGACGTCTAGCTGCCCTGGTCGCTTCCGTTAATG
GTGGCGATAATCGTCACCTCCTCCCCAACTTTCCCCTGCTTGCCCAGGAG
GTCATCGCTCTCGCCCTTCGTCTCCTTGCTACCTTAGCTGAAGATGCCTC
TCCGAACGAGCTTCACTCCCCCTTCCATCTCTCCACGCTTTCCTCCCGCC
GCTTTGTCGAAATGGCAGCGACGCTCCACCCTCAAGATACCTCCCTCCTC
CTGGCCAAGTTTGTCGCAATGACGGCCCCCTCGTCCTCTCTCGATCCTTC
CCACCTCATCATCGACCAGCAGCAAAACGTCGCGGCCGCTACCGCTGCCG
TCATTCGTGTCCTTGTGGACCGAGCGTTGGAAGCCACTGCGCTTGTCAGT
CAGCCCCCTGCCCCCCTCCCTGCCTTTACATCCTTTCCTAACCCGTCTCC
TTCCTATGCGATGTATATGGAGCACCAACGGCGTCTGATTGCATTAGGGC
CCAAACCACTCCTGCGGGTGTTGCAGGCCGTGCTGGGAGTAGCGGGAGAG
GGAGGGAGGGAGGGAGAGGAGCAGCAGACATGGCGGCTGGAGCAGTCTCT
GTCACTGCTGGACCAATGCTCACGTTTGATGGCTCGAGGACGGGGTGGAG
TGGAAGGGAGGGGGGGAGGGAGGGGGGAATATGGAGGAGAGATGGATTTG
GTATGGGGTGTGGCTAAATTGTATTTTTCTTTGGCGGCACGATCACCCGT
GGCAACGAAATTTGTGCGGACAAGAGTGGAGAGAGTGGTGAGGGAGTGGC
GGCAAATGATGGGGACGATGGGAGGGGGCGGAGGAAGAGGAGGGAAGAGG
TGA
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Synonyms
Publications