NO03G00520, NO03G00520 (gene) Nannochloropsis oceanica

Overview
NameNO03G00520
Unique NameNO03G00520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1437
Alignment locationchr3:161811..163247 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:161811..163247 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G00520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL065nonsL065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR000ncniR000Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR050ngnoR050Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005878NSK005878Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO03G00520.1NO03G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO03G00520.1NO03G00520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO03G00520 ID=NO03G00520|Name=NO03G00520|organism=Nannochloropsis oceanica|type=gene|length=1437bp
AACAGGCGCACCCCGCGCCATCCTGCGCTCTCCTCCCACCTTCCATCGCC
TTCAGTACTACAACCATTACCATGGGTCGTCCTACCCTAATCAAAGGCGT
CATTCTCGATCTATCCCTGCTGCTCCGCCTGAGTAGCGGCGGTTTGCCCT
TGGTTCGCACAGCTACCCCTGCTGCGGGTGTTGATTCATCTGCGCTATCT
TCACGACAACGGCCACTCCTCCCTGAGGACGAATTGGAACGACGCATTCG
CTTGGAGATGTTTGGATCTGGTTTCGCTGGAGAAAGAGGAGGAGGGGCGG
TGGGGAGGGGAGGCGGACTGGGATCGCAAATGCAGCAGCAGGAGGCGGAG
GGAAAGACGGACATGATCAGCACACTGGCAAGGACTTTGGGGGTGACGGG
GTTTGAGTCTGGAGGAGGGGGAGGGAGGGATCCACGTGAGGCATTTTCCT
CTGCCATAATAGCTTCCTCCTCTACCGTCACATCCACTGCCTCTTCCCTT
GACCCTGTCTGCTTTCCTGGAGCCCCCGCTCATTCCCTCTTTCCCTTTTC
CTCCTCCGCCTCCTTCGCCTCCTCCTCCTCCTCCTCCTCCTCCCCCACCG
CAGATGTCCGCAACAAGTATCTAGCCCGGCTTCGTGCGAAAGGACAAAAT
CAAAAACACAACAACAGCAGCAACAACAGCAGCAGCAGCAATGGTAGTAG
GGACAACAACGATCTTGCTATCCGACATAATCGTGTGCGCCGGTTGATGG
AAGCGAGGGACGGCGGGAGGGACGGCGGGAGGGAGGGTGGGAGTGAGGGT
GGCAGGAAGGGTGGATTGCTGACGTCGTCGGTGATGGACGTGTTGGATTA
CATGACTTGGCGGGGATTACGTTTAGGGTTAATACCGAGGGGGAGGAAGG
GACTAACGAGCGAGGTGCTGATGGGGGCTAGGCAGGGAGGGAAGGAAGGA
GGGATGGAGGGAGGGAGGGTGCGTTTTGAGGCAATTCCAGCTTTGGGAGA
GGGGGAGGAGGAGGAGGACGAGGAGGAGGAGCATGAGGAGGGAGAAACGA
GGAGGAGGAGGAGGGAGAGGGAGGAGGTGCGGTGGTTGTGCGAGGAGCTG
GGAATAATACCGCGAGAAATGTTGATGGTGACGGCCGAGTCGACCTTGGT
TGAGGTGGGGAGGAGTGAGGGGTGTTTTACGTGCCTGGTCAGCGCCAGGA
AGGGAGAGGGGAAGGGAGGGGGGAGAGGGGAGGAGCATTATCAGGTGACG
GCGTGGGAGGAGTTGCAGTGGGTGATTGAAGATTTGAATGGGATTTCCTA
CAGACAGAGGTGAGAAGGAGGAGGAGGATCAGGAGGAGGAGGAAAAGTAT
CGCGAGAAGGTGGAAGGGAGGCAGAAAAGGGCAAGTAATTGAGCCTTAAG
AAAGTAAATGAGCGTGACATCTAAAGCGAGATGAGAC
back to top

protein sequence of NO03G00520.1

>NO03G00520.1-protein ID=NO03G00520.1-protein|Name=NO03G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MGRPTLIKGVILDLSLLLRLSSGGLPLVRTATPAAGVDSSALSSRQRPLL
PEDELERRIRLEMFGSGFAGERGGGAVGRGGGLGSQMQQQEAEGKTDMIS
TLARTLGVTGFESGGGGGRDPREAFSSAIIASSSTVTSTASSLDPVCFPG
APAHSLFPFSSSASFASSSSSSSSPTADVRNKYLARLRAKGQNQKHNNSS
NNSSSSNGSRDNNDLAIRHNRVRRLMEARDGGRDGGREGGSEGGRKGGLL
TSSVMDVLDYMTWRGLRLGLIPRGRKGLTSEVLMGARQGGKEGGMEGGRV
RFEAIPALGEGEEEEDEEEEHEEGETRRRRREREEVRWLCEELGIIPREM
LMVTAESTLVEVGRSEGCFTCLVSARKGEGKGGGRGEEHYQVTAWEELQW
VIEDLNGISYRQR*
back to top
Synonyms
Publications