NO03G00520.1, NO03G00520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO03G00520.1
Unique NameNO03G00520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1437
Alignment locationchr3:161811..163247 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr3genomechr3:161811..163247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO03G00520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO03G00520NO03G00520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO03G00520.1NO03G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO03G00520.1.cds1NO03G00520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO03G00520.1 ID=NO03G00520.1|Name=NO03G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp
AACAGGCGCACCCCGCGCCATCCTGCGCTCTCCTCCCACCTTCCATCGCC
TTCAGTACTACAACCATTACCATGGGTCGTCCTACCCTAATCAAAGGCGT
CATTCTCGATCTATCCCTGCTGCTCCGCCTGAGTAGCGGCGGTTTGCCCT
TGGTTCGCACAGCTACCCCTGCTGCGGGTGTTGATTCATCTGCGCTATCT
TCACGACAACGGCCACTCCTCCCTGAGGACGAATTGGAACGACGCATTCG
CTTGGAGATGTTTGGATCTGGTTTCGCTGGAGAAAGAGGAGGAGGGGCGG
TGGGGAGGGGAGGCGGACTGGGATCGCAAATGCAGCAGCAGGAGGCGGAG
GGAAAGACGGACATGATCAGCACACTGGCAAGGACTTTGGGGGTGACGGG
GTTTGAGTCTGGAGGAGGGGGAGGGAGGGATCCACGTGAGGCATTTTCCT
CTGCCATAATAGCTTCCTCCTCTACCGTCACATCCACTGCCTCTTCCCTT
GACCCTGTCTGCTTTCCTGGAGCCCCCGCTCATTCCCTCTTTCCCTTTTC
CTCCTCCGCCTCCTTCGCCTCCTCCTCCTCCTCCTCCTCCTCCCCCACCG
CAGATGTCCGCAACAAGTATCTAGCCCGGCTTCGTGCGAAAGGACAAAAT
CAAAAACACAACAACAGCAGCAACAACAGCAGCAGCAGCAATGGTAGTAG
GGACAACAACGATCTTGCTATCCGACATAATCGTGTGCGCCGGTTGATGG
AAGCGAGGGACGGCGGGAGGGACGGCGGGAGGGAGGGTGGGAGTGAGGGT
GGCAGGAAGGGTGGATTGCTGACGTCGTCGGTGATGGACGTGTTGGATTA
CATGACTTGGCGGGGATTACGTTTAGGGTTAATACCGAGGGGGAGGAAGG
GACTAACGAGCGAGGTGCTGATGGGGGCTAGGCAGGGAGGGAAGGAAGGA
GGGATGGAGGGAGGGAGGGTGCGTTTTGAGGCAATTCCAGCTTTGGGAGA
GGGGGAGGAGGAGGAGGACGAGGAGGAGGAGCATGAGGAGGGAGAAACGA
GGAGGAGGAGGAGGGAGAGGGAGGAGGTGCGGTGGTTGTGCGAGGAGCTG
GGAATAATACCGCGAGAAATGTTGATGGTGACGGCCGAGTCGACCTTGGT
TGAGGTGGGGAGGAGTGAGGGGTGTTTTACGTGCCTGGTCAGCGCCAGGA
AGGGAGAGGGGAAGGGAGGGGGGAGAGGGGAGGAGCATTATCAGGTGACG
GCGTGGGAGGAGTTGCAGTGGGTGATTGAAGATTTGAATGGGATTTCCTA
CAGACAGAGGTGAGAAGGAGGAGGAGGATCAGGAGGAGGAGGAAAAGTAT
CGCGAGAAGGTGGAAGGGAGGCAGAAAAGGGCAAGTAATTGAGCCTTAAG
AAAGTAAATGAGCGTGACATCTAAAGCGAGATGAGAC
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protein sequence of NO03G00520.1

>NO03G00520.1-protein ID=NO03G00520.1-protein|Name=NO03G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MGRPTLIKGVILDLSLLLRLSSGGLPLVRTATPAAGVDSSALSSRQRPLL
PEDELERRIRLEMFGSGFAGERGGGAVGRGGGLGSQMQQQEAEGKTDMIS
TLARTLGVTGFESGGGGGRDPREAFSSAIIASSSTVTSTASSLDPVCFPG
APAHSLFPFSSSASFASSSSSSSSPTADVRNKYLARLRAKGQNQKHNNSS
NNSSSSNGSRDNNDLAIRHNRVRRLMEARDGGRDGGREGGSEGGRKGGLL
TSSVMDVLDYMTWRGLRLGLIPRGRKGLTSEVLMGARQGGKEGGMEGGRV
RFEAIPALGEGEEEEDEEEEHEEGETRRRRREREEVRWLCEELGIIPREM
LMVTAESTLVEVGRSEGCFTCLVSARKGEGKGGGRGEEHYQVTAWEELQW
VIEDLNGISYRQR*
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mRNA from alignment at chr3:161811..163247+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO03G00520.1 ID=NO03G00520.1|Name=NO03G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1437bp|location=Sequence derived from alignment at chr3:161811..163247+ (Nannochloropsis oceanica)
AACAGGCGCACCCCGCGCCATCCTGCGCTCTCCTCCCACCTTCCATCGCC
TTCAGTACTACAACCATTACCATGGGTCGTCCTACCCTAATCAAAGGCGT
CATTCTCGATCTATCCCTGCTGCTCCGCCTGAGTAGCGGCGGTTTGCCCT
TGGTTCGCACAGCTACCCCTGCTGCGGGTGTTGATTCATCTGCGCTATCT
TCACGACAACGGCCACTCCTCCCTGAGGACGAATTGGAACGACGCATTCG
CTTGGAGATGTTTGGATCTGGTTTCGCTGGAGAAAGAGGAGGAGGGGCGG
TGGGGAGGGGAGGCGGACTGGGATCGCAAATGCAGCAGCAGGAGGCGGAG
GGAAAGACGGACATGATCAGCACACTGGCAAGGACTTTGGGGGTGACGGG
GTTTGAGTCTGGAGGAGGGGGAGGGAGGGATCCACGTGAGGCATTTTCCT
CTGCCATAATAGCTTCCTCCTCTACCGTCACATCCACTGCCTCTTCCCTT
GACCCTGTCTGCTTTCCTGGAGCCCCCGCTCATTCCCTCTTTCCCTTTTC
CTCCTCCGCCTCCTTCGCCTCCTCCTCCTCCTCCTCCTCCTCCCCCACCG
CAGATGTCCGCAACAAGTATCTAGCCCGGCTTCGTGCGAAAGGACAAAAT
CAAAAACACAACAACAGCAGCAACAACAGCAGCAGCAGCAATGGTAGTAG
GGACAACAACGATCTTGCTATCCGACATAATCGTGTGCGCCGGTTGATGG
AAGCGAGGGACGGCGGGAGGGACGGCGGGAGGGAGGGTGGGAGTGAGGGT
GGCAGGAAGGGTGGATTGCTGACGTCGTCGGTGATGGACGTGTTGGATTA
CATGACTTGGCGGGGATTACGTTTAGGGTTAATACCGAGGGGGAGGAAGG
GACTAACGAGCGAGGTGCTGATGGGGGCTAGGCAGGGAGGGAAGGAAGGA
GGGATGGAGGGAGGGAGGGTGCGTTTTGAGGCAATTCCAGCTTTGGGAGA
GGGGGAGGAGGAGGAGGACGAGGAGGAGGAGCATGAGGAGGGAGAAACGA
GGAGGAGGAGGAGGGAGAGGGAGGAGGTGCGGTGGTTGTGCGAGGAGCTG
GGAATAATACCGCGAGAAATGTTGATGGTGACGGCCGAGTCGACCTTGGT
TGAGGTGGGGAGGAGTGAGGGGTGTTTTACGTGCCTGGTCAGCGCCAGGA
AGGGAGAGGGGAAGGGAGGGGGGAGAGGGGAGGAGCATTATCAGGTGACG
GCGTGGGAGGAGTTGCAGTGGGTGATTGAAGATTTGAATGGGATTTCCTA
CAGACAGAGGTGAGAAGGAGGAGGAGGATCAGGAGGAGGAGGAAAAGTAT
CGCGAGAAGGTGGAAGGGAGGCAGAAAAGGGCAAGTAATTGAGCCTTAAG
AAAGTAAATGAGCGTGACATCTAAAGCGAGATGAGAC
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Coding sequence (CDS) from alignment at chr3:161811..163247+

>NO03G00520.1 ID=NO03G00520.1|Name=NO03G00520.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr3:161811..163247+ (Nannochloropsis oceanica)
ATGGGTCGTCCTACCCTAATCAAAGGCGTCATTCTCGATCTATCCCTGCT
GCTCCGCCTGAGTAGCGGCGGTTTGCCCTTGGTTCGCACAGCTACCCCTG
CTGCGGGTGTTGATTCATCTGCGCTATCTTCACGACAACGGCCACTCCTC
CCTGAGGACGAATTGGAACGACGCATTCGCTTGGAGATGTTTGGATCTGG
TTTCGCTGGAGAAAGAGGAGGAGGGGCGGTGGGGAGGGGAGGCGGACTGG
GATCGCAAATGCAGCAGCAGGAGGCGGAGGGAAAGACGGACATGATCAGC
ACACTGGCAAGGACTTTGGGGGTGACGGGGTTTGAGTCTGGAGGAGGGGG
AGGGAGGGATCCACGTGAGGCATTTTCCTCTGCCATAATAGCTTCCTCCT
CTACCGTCACATCCACTGCCTCTTCCCTTGACCCTGTCTGCTTTCCTGGA
GCCCCCGCTCATTCCCTCTTTCCCTTTTCCTCCTCCGCCTCCTTCGCCTC
CTCCTCCTCCTCCTCCTCCTCCCCCACCGCAGATGTCCGCAACAAGTATC
TAGCCCGGCTTCGTGCGAAAGGACAAAATCAAAAACACAACAACAGCAGC
AACAACAGCAGCAGCAGCAATGGTAGTAGGGACAACAACGATCTTGCTAT
CCGACATAATCGTGTGCGCCGGTTGATGGAAGCGAGGGACGGCGGGAGGG
ACGGCGGGAGGGAGGGTGGGAGTGAGGGTGGCAGGAAGGGTGGATTGCTG
ACGTCGTCGGTGATGGACGTGTTGGATTACATGACTTGGCGGGGATTACG
TTTAGGGTTAATACCGAGGGGGAGGAAGGGACTAACGAGCGAGGTGCTGA
TGGGGGCTAGGCAGGGAGGGAAGGAAGGAGGGATGGAGGGAGGGAGGGTG
CGTTTTGAGGCAATTCCAGCTTTGGGAGAGGGGGAGGAGGAGGAGGACGA
GGAGGAGGAGCATGAGGAGGGAGAAACGAGGAGGAGGAGGAGGGAGAGGG
AGGAGGTGCGGTGGTTGTGCGAGGAGCTGGGAATAATACCGCGAGAAATG
TTGATGGTGACGGCCGAGTCGACCTTGGTTGAGGTGGGGAGGAGTGAGGG
GTGTTTTACGTGCCTGGTCAGCGCCAGGAAGGGAGAGGGGAAGGGAGGGG
GGAGAGGGGAGGAGCATTATCAGGTGACGGCGTGGGAGGAGTTGCAGTGG
GTGATTGAAGATTTGAATGGGATTTCCTACAGACAGAGGTGA
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Synonyms
Publications