NO29G01790, NO29G01790 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO29G01790 vs. NCBI_GenBank
Match: OHT04840.1 (Myb-like DNA-binding domain containing protein [Tritrichomonas foetus]) HSP 1 Score: 127.9 bits (320), Expect = 2.400e-25 Identity = 60/163 (36.81%), Postives = 91/163 (55.83%), Query Frame = 0
Query: 470 WTAVDDAKLLRVMNDESCIQWSHVFPFFPGRSSSSCMRRWKEIKSDARSNRLSRRKWTKLEDLLLFQHVLAYMAQQQPVDWKRLADLRPFRSKKECLHRWTNFLDPNLNKSKWTPAEDRALIDFKLRHGSTWKNISAFFPGRPVYAIKNRWYGRLRHDLSRGE 633
WT +D KL+R+ + S I WS + FP +++ RW+++ + + L + WT+ ED + ++ Y+ Q DW +LA+L P R K+C RW N LDPN+ KS WT ED+ LID +G+ W I++FF GR +KNRW ++ L R E
Sbjct: 40 WTEEEDQKLIRIASQSSTIAWSAIAKLFPNKTAPQIAGRWEKVLNPS----LVKGSWTREED----EMIINYVKQHGDKDWAKLAELLPGRIGKQCRERWKNHLDPNVQKSGWTEEEDQKLIDMHKLYGNAWTRIASFFEGRTDNCVKNRWNSTIKRRLERME 194
BLAST of NO29G01790 vs. NCBI_GenBank
Match: XP_001583662.1 (Myb-like DNA-binding domain containing protein [Trichomonas vaginalis G3] >EAY22676.1 Myb-like DNA-binding domain containing protein [Trichomonas vaginalis G3]) HSP 1 Score: 125.2 bits (313), Expect = 1.500e-24 Identity = 56/159 (35.22%), Postives = 91/159 (57.23%), Query Frame = 0
Query: 470 WTAVDDAKLLRVMNDESCIQWSHVFPFFPGRSSSSCMRRWKEIKSDARSNRLSRRKWTKLEDLLLFQHVLAYMAQQQPVDWKRLADLRPFRSKKECLHRWTNFLDPNLNKSKWTPAEDRALIDFKLRHGSTWKNISAFFPGRPVYAIKNRWYGRLRHDL 629
W+A DDA L ++M +E W + P+FPG++++ RW ++ +L + WT+ ED + ++ ++ + +WK+LA++ P R K+C RW N LDPN+N+S WTP ED+ LI ++G+ W IS F GR +KNRW L+ +
Sbjct: 23 WSAEDDALLQKLMTEEPTDNWPSLLPYFPGKTATQIGERWCKVLDP----KLIKGSWTREED----EMIIKFVQENGTKNWKKLAEILPGRLGKQCRERWRNHLDPNVNRSPWTPEEDKLLIQLHEKYGNQWVKISEMFNGRSDNCVKNRWNSTLKKQI 173
BLAST of NO29G01790 vs. NCBI_GenBank
Match: CAD36018.1 (c-myb like protein [Sterkiella histriomuscorum]) HSP 1 Score: 119.8 bits (299), Expect = 6.500e-23 Identity = 62/161 (38.51%), Postives = 85/161 (52.80%), Query Frame = 0
Query: 470 WTAVDDAKLLRVMNDESCIQWSHVFPFFPGRSSSSCMRRWKEIKSDARSNRLSRRKWTKLEDLLLFQHVLAYMAQQQPVDWKRLADLRPFRSKKECLHRWTNFLDPNLNKSKWTPAEDRALIDFKLRHGSTWKNISAFFPGRPVYAIKNRWYGRLRHDLSR 631
WT DDAKLL+ + +W+ + F RS C RW E+K +S+ WTK ED +L Q V + P +W +A P R K+C RW N LDPN+ K KW+P EDR ++ L G+ W I+ PGR AIKNR+ +L+ +SR
Sbjct: 95 WTPFDDAKLLKYVEKFGDQKWNKISKFMRDRSEIQCFNRWLELKDTC---FVSKGPWTKEEDEILRQMVETH----GPRNWSTIAAALPGRIGKQCRERWHNHLDPNIKKEKWSPEEDRIILKMHLEMGNRWCEIAKLLPGRTDNAIKNRFNSKLKKQISR 248
BLAST of NO29G01790 vs. NCBI_GenBank
Match: CAD36016.1 (c-myb like protein [Sterkiella histriomuscorum]) HSP 1 Score: 119.8 bits (299), Expect = 6.500e-23 Identity = 62/161 (38.51%), Postives = 85/161 (52.80%), Query Frame = 0
Query: 470 WTAVDDAKLLRVMNDESCIQWSHVFPFFPGRSSSSCMRRWKEIKSDARSNRLSRRKWTKLEDLLLFQHVLAYMAQQQPVDWKRLADLRPFRSKKECLHRWTNFLDPNLNKSKWTPAEDRALIDFKLRHGSTWKNISAFFPGRPVYAIKNRWYGRLRHDLSR 631
WT DDAKLL+ + +W+ + F RS C RW E+K +S+ WTK ED +L Q V + P +W +A P R K+C RW N LDPN+ K KW+P EDR ++ L G+ W I+ PGR AIKNR+ +L+ +SR
Sbjct: 95 WTPFDDAKLLKYVEKFGDQKWNKISKFMRDRSEIQCFNRWLELKDTC---FVSKGPWTKEEDEILRQMVETH----GPRNWSTIAAALPGRIGKQCRERWHNHLDPNIKKEKWSPEEDRIILKMHLEMGNRWCEIAKLLPGRTDNAIKNRFNSKLKKQISR 248
BLAST of NO29G01790 vs. NCBI_GenBank
Match: OHS96390.1 (Myb-like DNA-binding domain containing protein [Tritrichomonas foetus]) HSP 1 Score: 117.1 bits (292), Expect = 4.200e-22 Identity = 54/159 (33.96%), Postives = 89/159 (55.97%), Query Frame = 0
Query: 470 WTAVDDAKLLRVMNDESCIQWSHVFPFFPGRSSSSCMRRWKEIKSDARSNRLSRRKWTKLEDLLLFQHVLAYMAQQQPVDWKRLADLRPFRSKKECLHRWTNFLDPNLNKSKWTPAEDRALIDFKLRHGSTWKNISAFFPGRPVYAIKNRWYGRLRHDL 629
W++ +DA L+++MN++ WS +FPG++ RW+++ + A L + WT+ ED + ++ ++ Q +W +LA L P R K+C RW N LDP++N+ WT ED LI+ + G+ W I+ + PGR +IKNRW L+ L
Sbjct: 27 WSSEEDALLIQLMNEKPNTNWSEYVHYFPGKTGQQVAERWEKVLNPA----LIKGSWTREED----ETIIEFVKQYGTKNWTKLATLLPGRIGKQCRERWRNHLDPDVNRDPWTEEEDNILIEMHEKIGNQWVKIAEYLPGRSDNSIKNRWNSTLKKRL 177
BLAST of NO29G01790 vs. NCBI_GenBank
Match: EJY83564.1 (C-myb like protein (macronuclear) [Oxytricha trifallax]) HSP 1 Score: 114.0 bits (284), Expect = 3.600e-21 Identity = 59/161 (36.65%), Postives = 84/161 (52.17%), Query Frame = 0
Query: 470 WTAVDDAKLLRVMNDESCIQWSHVFPFFPGRSSSSCMRRWKEIKSDARSNRLSRRKWTKLEDLLLFQHVLAYMAQQQPVDWKRLADLRPFRSKKECLHRWTNFLDPNLNKSKWTPAEDRALIDFKLRHGSTWKNISAFFPGRPVYAIKNRWYGRLRHDLSR 631
WT DDAKLL+ + +W+ + F RS C RW E+K +S+ WT+ ED +L Q V Q P +W +A P R K+C RW N LDP++ K KW+ EDR ++ L G+ W I+ + PGR AIKNR+ +L+ + R
Sbjct: 90 WTPFDDAKLLKYVEKFGDQKWNKISKFMRDRSEIQCFNRWLELKDTC---FVSKGPWTREEDEILRQMV----ETQGPRNWSTVAAALPGRIGKQCRERWHNHLDPSIKKEKWSQEEDRIILQMHLDMGNRWCEIAKYLPGRTDNAIKNRFNSKLKKQIQR 243
BLAST of NO29G01790 vs. NCBI_GenBank
Match: OHT05782.1 (Myb-like DNA-binding domain containing protein [Tritrichomonas foetus]) HSP 1 Score: 114.0 bits (284), Expect = 3.600e-21 Identity = 56/163 (34.36%), Postives = 85/163 (52.15%), Query Frame = 0
Query: 469 VWTAVDDAKLLRVMNDESC-------IQWSHVFPFFPGRSSSSCMRRWKEIKSDARSNRLSRRKWTKLEDLLLFQHVLAYMAQQQPVDWKRLADLRPFRSKKECLHRWTNFLDPNLNKSKWTPAEDRALIDFKLRHGSTWKNISAFFPGRPVYAIKNRWYGRL 625
VW+ +DAKL+R++N + I W +V FFP ++ + RW ++ L + W++ ED + ++ ++ + P W +LA + P R K+ RW N LDPN+N+ WTP ED +ID +HG+ W IS P R AIKNRW L
Sbjct: 25 VWSEAEDAKLIRIVNSITMNKSPMTPINWFNVASFFPNKTQTQVTDRWVKVLDPT----LVKGSWSREED----EKIIDFVQENGPKHWAKLASMLPGRLGKQVRERWVNHLDPNVNRGPWTPEEDEIIIDLHQKHGNHWTYISTHLPTRSDNAIKNRWNSTL 179
BLAST of NO29G01790 vs. NCBI_GenBank
Match: OHT14697.1 (Myb-like DNA-binding domain containing protein [Tritrichomonas foetus]) HSP 1 Score: 114.0 bits (284), Expect = 3.600e-21 Identity = 54/156 (34.62%), Postives = 82/156 (52.56%), Query Frame = 0
Query: 470 WTAVDDAKLLRVMNDESCIQWSHVFPFFPGRSSSSCMRRWKEIKSDARSNRLSRRKWTKLEDLLLFQHVLAYMAQQQPVDWKRLADLRPFRSKKECLHRWTNFLDPNLNKSKWTPAEDRALIDFKLRHGSTWKNISAFFPGRPVYAIKNRWYGRLR 626
WT +D LL ++ + + W+ + P FPG+++ RW ++ + L + WT+ ED + + ++AQ +W +LA L P R K+C RW N LDPN S WTP ED L+ +G++W I+ F PGR IKNRW L+
Sbjct: 30 WTQKEDTLLLNLVQNSMHVSWTELAPQFPGKTAQQISERWSKVVDPS----LIKGGWTREED----ETITNFVAQYGVKNWTKLAQLLPGRIGKQCRERWRNHLDPNNKSSPWTPDEDNLLLQLHQEYGNSWVKIANFMPGRSDNCIKNRWNSTLK 177
BLAST of NO29G01790 vs. NCBI_GenBank
Match: OHS93756.1 (hypothetical protein TRFO_11536 [Tritrichomonas foetus]) HSP 1 Score: 113.6 bits (283), Expect = 4.600e-21 Identity = 57/156 (36.54%), Postives = 81/156 (51.92%), Query Frame = 0
Query: 470 WTAVDDAKLLRVMNDESCIQWSHVFPFFPGRSSSSCMRRWKEIKSDARSNRLSRRKWTKLEDLLLFQHVLAYMAQQQPVDWKRLADLRPFRSKKECLHRWTNFLDPNLNKSKWTPAEDRALIDFKLRHGSTWKNISAFFPGRPVYAIKNRWYGRLR 626
WT DD L R++ D W + +FPG+ + RW+++ + +L + WT+ ED Q ++ ++A+ +WK+LA L P R K+C RW N LDP +N S WT ED LI G+ W IS PGR AIKNRW L+
Sbjct: 52 WTKEDDELLFRLLKDVDNPNWPFIAKYFPGKVTQQVTERWEKVLNP----KLIKGSWTREED----QTIINFVAENGSKNWKQLATLLPGRIGKQCRERWRNHLDPAINHSMWTSEEDFLLISLHETFGNAWVKISQHMPGRSDNAIKNRWNSTLK 199
BLAST of NO29G01790 vs. NCBI_GenBank
Match: OHT09987.1 (Myb-like DNA-binding domain containing protein [Tritrichomonas foetus]) HSP 1 Score: 112.8 bits (281), Expect = 7.900e-21 Identity = 57/166 (34.34%), Postives = 87/166 (52.41%), Query Frame = 0
Query: 467 SPVWTAVDDAKLLRVMNDESCIQWSHVFPFFPGRSSSSCMRRWKEIKSDARSNRLSRRKWTKLEDLLLFQHVLAYMAQQQPVDWKRLADLRPFRSKKECLHRWTNFLDPNLNKSKWTPAEDRALIDFKLRHGSTWKNISAFFPGRPVYAIKNRWYGRLRHDLSRGE 633
+P WT +D +L +++ +W + FPG+ + RW ++ + + L + WT ED ++ ++A+ P +W LA L P R K+C RW N L P++NK WTP ED+ LID + G+ W I+A PGR A+KNRW L+ L R E
Sbjct: 33 NPNWTQEEDMRLTELISKYPEPKWQEITRHFPGKGAHQVADRWAKVLNPS----LVKGSWTGEED----AKIVKWVAENGPKNWGALAALLPGRISKQCRERWHNHLSPDVNKKDWTPEEDKILIDRQKLWGNKWSQIAADLPGRTDNAVKNRWNSSLKRRLERIE 190 The following BLAST results are available for this feature:
BLAST of NO29G01790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO29G01790 ID=NO29G01790|Name=NO29G01790|organism=Nannochloropsis oceanica|type=gene|length=7641bpback to top protein sequence of NO29G01790.1 >NO29G01790.1-protein ID=NO29G01790.1-protein|Name=NO29G01790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1325bpback to top Synonyms
Publications
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