NO29G01670, NO29G01670 (gene) Nannochloropsis oceanica

Overview
NameNO29G01670
Unique NameNO29G01670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2156
Alignment locationchr29:524833..526988 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:524833..526988 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023238FAM175
Homology
[Close]
BLAST of NO29G01670 vs. NCBI_GenBank
Match: EWM21337.1 (hypothetical protein Naga_100075g12 [Nannochloropsis gaditana])

HSP 1 Score: 233.4 bits (594), Expect = 9.600e-58
Identity = 147/346 (42.49%), Postives = 191/346 (55.20%), Query Frame = 0 
Query:   10 GHRTLGEVRMAGSLLAALIKETGRRAKTHSEGLLLGATQALTVAVTDDATETTERALLQMDVTGYVCTGCRDSFYQPLTGVVKQEKVAEATAGTNGEHSVVGWFVARHCVTTKPSLRDLAILRQLGEYVNHQRK----------------GQKGENGG-------------------IEXXXXXXXXXXGGRFLCLPLSAPPLSPRPSDGFSRPAFHSLLVKVRAISHDCTAEYQTYTGGXXXXXXXXXXXXXXXXXXXXXXGLAG-MPSMRPGLRELARTVPPPHVTEYELYVDQVLARLHALVDDIQTEEMALSALKEKWRQMRRVLRKEKR----AEGEKEGK 316
            G  +LGEVR+AGSLLA LI+  G+RA   +EGLLLG     TVAVTDD  E  ER  LQ+DVTGYV T  +D+FY+PLTG +   K+AEAT+  N  H +VGW+VAR+  +TKPSLRDLAILR LG+Y+    +                 +K  +G                                G  + C  LS  P +P  S   +  A+ + L+KVR +SHD TAEYQ YTGG                        +  +PSMRPGL + AR +PPPHVTEYELY+DQ+L  LH LVD+I+ EE+ LSAL++K  +++ +LR EK       GE+E K
Sbjct:    2 GSISLGEVRIAGSLLATLIQVVGQRAGRRAEGLLLGDALVHTVAVTDDTQEARERTDLQLDVTGYVSTNQKDAFYEPLTGTMNATKIAEATSEVNRRHRMVGWYVARNTASTKPSLRDLAILRHLGDYLRSTSREDDAEALRGESRTPSEAKKSTSGTTLDRRGKDPALAFPAVLIVFSLDLRSSSEAQGISYACHYLS--PAAPFSSSESASLAYQTHLLKVRNVSHDSTAEYQAYTGGTYPSLLSPHSSLPSRTSQPSARMPSPVIPSMRPGLADFARAIPPPHVTEYELYLDQILEHLHGLVDEIRAEELELSALRKKQGRLKHLLRAEKEKGRGISGEREEK 345
[Close]
BLAST of NO29G01670 vs. NCBI_GenBank
Match: XP_005853607.1 (hypothetical protein NGA_0670320 [Nannochloropsis gaditana CCMP526] >EKU22755.1 hypothetical protein NGA_0670320 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 222.2 bits (565), Expect = 2.200e-54
Identity = 135/317 (42.59%), Postives = 173/317 (54.57%), Query Frame = 0 
Query:   10 GHRTLGEVRMAGSLLAALIKETGRRAKTHSEGLLLGATQALTVAVTDDATETTERALLQMDVTGYVCTGCRDSFYQPLTGVVKQEKVAEATAGTNGEHSVVGWFVARHCVTTKPSLRDLAILRQLGEYVNHQRK----------------GQKGENGG-------------------IEXXXXXXXXXXGGRFLCLPLSAPPLSPRPSDGFSRPAFHSLLVKVRAISHDCTAEYQTYTGGXXXXXXXXXXXXXXXXXXXXXXGLAG-MPSMRPGLRELARTVPPPHVTEYELYVDQVLARLHALVDDIQTEEMALSA 291
            G  +LGEVR+AGSLLA LI+  G+RA   +EGLLLG     TVAVTDD  E  +R  LQ+DVTGYV T  +D+FY+PLTG +   K+AEAT+  N  H +VGW+VAR+  +TKPSLRDLAILR LG+Y+    +                 +K  +G                                G  + C  LS  P +P  S   +  A+ + L+KVR +SHD TAEYQ YTGG                        +  +PSMRPGL + AR +PPPHVTEYELY+DQ+L  LH LVD+I+ EE+ L A
Sbjct:    2 GSISLGEVRIAGSLLATLIQVVGQRAGRRAEGLLLGDALVHTVAVTDDTQEARDRTDLQLDVTGYVSTNQKDAFYEPLTGTMNATKIAEATSEVNRRHRMVGWYVARNTASTKPSLRDLAILRHLGDYLRSTSREDDAEALRGESRTPSEAKKSSSGTTLDRRGKDPALAFPAVLIVFSLDLRSSSEAQGISYACHYLS--PAAPFSSSESASLAYQTHLLKVRNVSHDSTAEYQAYTGGTYPSLLSPHSSLPSRTSQPSARMPSPVIPSMRPGLADFARAIPPPHVTEYELYLDQILEHLHGLVDEIRAEELELRA 316
[Close]
BLAST of NO29G01670 vs. NCBI_GenBank
Match: GAQ84035.1 (hypothetical protein KFL_001730280 [Klebsormidium nitens])

HSP 1 Score: 65.1 bits (157), Expect = 4.500e-7
Identity = 42/123 (34.15%), Postives = 58/123 (47.15%), Query Frame = 0 
Query:   14 LGEVRMAGSLLAALIKETGRRAKTHSEGLLLGATQALTVAVTDDATETTERALLQMDVTGYVCTGCRDSFYQPLTGVVKQE--KVAEATAGTNGEHSVVGWFVARHCVTTKPSLRDLAILRQL 135
            L  V ++G  LA+L+ +    A    +GLL G      V+   D  E T        VTG+ C+G   SFY P   V   +  +VA    G  G   V+GWFVARH    +PS+R+ A+   L
Sbjct:   10 LRAVDISGPTLASLLHDV-LAADRDVDGLLFGRVAQRMVSTVSDQEEATSSQKTTATVTGFCCSGRLFSFYDPSGAVDPPQLARVAGEGIGEGGRDPVIGWFVARHNTPLRPSMREAAVTSSL 131
The following BLAST results are available for this feature:
BLAST of NO29G01670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM21337.19.600e-5842.49hypothetical protein Naga_100075g12 [Nannochlorops... [more]
XP_005853607.12.200e-5442.59hypothetical protein NGA_0670320 [Nannochloropsis ... [more]
GAQ84035.14.500e-734.15hypothetical protein KFL_001730280 [Klebsormidium ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL062nonsL062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR079ngnoR079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005257NSK005257Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01670.1NO29G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|641689gene_8346Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100075g12gene9080Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01670.1NO29G01670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01670 ID=NO29G01670|Name=NO29G01670|organism=Nannochloropsis oceanica|type=gene|length=2156bp
ATGGTACTCACCACCACCACCGCCGACGGCCATCGTACCCTTGGTGAGGT
TCGCATGGCGGGTTCCCTTTTGGCTGCACTGATAAAGGAAACGGGGCGAA
GAGCAAAAACACACTCGGAGGGGTTGCTGCTGGGGGCGACGCAAGCCTTG
ACTGTGGCAGTTACTGACGACGCCACGGAAACCACGGAGCGGGCATTGTT
GCAGATGGATGTGACAGGTTATGTGTGCACGGGGTGCCGGGATTCGTTTT
ATCAGCCTTTGACAGGAGTGGTGAAACAGGAAAAGGTGGCGGAGGCGACG
GCGGGGACGAATGGGGAGCATgtacgtagacgtgcaagaggaacgagggg
agaaagaggtgtgataatgtgaaaaatgggcaagaactacatcgaattaa
cgcgtttttggcccaaaacttgtttcttattaaatcctgccacacccatc
cctccctctatccctcactcccttcctcagAGCGTGGTTGGCTGGTTCGT
TGCCCGACATTGCGTCACCACCAAGCCCAGCCTACGGGACCTGGCCATCT
TGAGACAGCTGGGGGAATACGTCAATCATCAACGAAAAGGGCAGAAAGGA
GAGAATGGCGGGATAGAAGAGGACAAGCAGCAACAAGAACAACAAGAAGG
AGGgtgcggaggaggcggcggaagcactctcccatctcccaccccctgga
ccccagtagttctcatcgtcttctccctcgacctccaacccacatccgaa
acccaagGCGTTTCCTATGCCTGCCACTATCTGCCCCCCCCCTCTCTCCA
CGGCCCTCAGACGGCTTTTCCCGCCCCGCCTTCCACTCGCTCCTCGTCAA
GGTCCGTGCTATCTCCCACGACTGCACCGCTGAATACCAAACTTACACGG
GAGGATATCATTCCTCCCTCCTTTCTCCCCCGTCCTCCTCCTCTTCCTCC
TCCTCTACCACCACCACCACCGGTCTGGCCGGGATGCCCTCCATGCGTCC
TGGCTTAAGGGAGCTGGCAAGGACTGTCCCTCCTCCTCACGTCACAGAGT
ATGAACTGTACGTGGATCAAGTTTTAGCGCGATTGCACGCCTTGGTGGAT
GACATTCAGACAGAAGAGATGGCTTTGAGTGCGTTGAAAGAAAAATGGCG
GCAGATGCGGCGAGTCCTGCGCAAGGAGAAGAGGGCGGAGGGGGAGAAGG
AAGGGAAGGAGGGGTGAAGATGAGAGCGGGAGACAAAAgtaagtacaggt
catgtcacagattgcatacaatagtgtgtactagcagcggaagaaaagga
gaagagaagtttgtgtaacaaggcaaagcagcaaggcctcccactagctc
ctggggccgggtttgcctctggcgctagaaaagaatatgtttggttgcac
atcgctgtttttaatttttgaatttcatcaccaagtttagagtttcctaa
tgaagcagccccggcacagctttgagctgctggtgatatagcccgcgtat
gcccctgtcgttcgcctccttgtcgaggcgaaacgacaggggcatatgca
gcggtcagaccgtcggagaccagcctcccatcatcatgtctctctctact
tccgtctttgccccattgcaagatacgaatgcagggagagagtggcgaat
gcagcggggcagctgtcttttgttccgctgtcttttggaaaggtcattgt
tgagtaaagagctcttcctcctccacctcctcctcctcctcctcctaaac
atagGTACATACACCACAGTATGCGATTCGTGCGTCGTAGACCGGTTGCT
CGATACGCCAACGACATGCTTTGGGCGCCACCTTGGCACGCCATCTTCGT
TGTGCGCAATGCTTAGCAGGGACATCCTGGGAGTGAATGGGAACAGGTAT
GGTATAAATAGTGAAAGTGGGAGGGATGGGGGTGGGATTCCAAACATAGA
TACATACACCATACTGTGATTCAAGATATAGATAAATAAATCACGCTGTG
ATTCAAGATATAGATACATGCACCACGCTGAAATTCAAGACATAGTTATA
TGCACTACGCTGCGATTCGAGACATAGGTACATACACCATACCGAGATAC
GGACTCTACAGAAAATTATTTTAGTTTTTTGTTCTTTTGGGGGGAAGGCA
TGATTC
back to top

protein sequence of NO29G01670.1

>NO29G01670.1-protein ID=NO29G01670.1-protein|Name=NO29G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MVLTTTTADGHRTLGEVRMAGSLLAALIKETGRRAKTHSEGLLLGATQAL
TVAVTDDATETTERALLQMDVTGYVCTGCRDSFYQPLTGVVKQEKVAEAT
AGTNGEHSVVGWFVARHCVTTKPSLRDLAILRQLGEYVNHQRKGQKGENG
GIEEDKQQQEQQEGGRFLCLPLSAPPLSPRPSDGFSRPAFHSLLVKVRAI
SHDCTAEYQTYTGGYHSSLLSPPSSSSSSSSTTTTTGLAGMPSMRPGLRE
LARTVPPPHVTEYELYVDQVLARLHALVDDIQTEEMALSALKEKWRQMRR
VLRKEKRAEGEKEGKEG*
back to top
Synonyms
Publications