NO29G01670.1, NO29G01670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01670.1
Unique NameNO29G01670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1377
Alignment locationchr29:524833..526988 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:524833..526988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G01670.1 vs.
Match: XP_005853607.1 (hypothetical protein NGA_0670320 [Nannochloropsis gaditana CCMP526]; EKU22755.1 hypothetical protein NGA_0670320 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 237.7 bits (605), Expect = 5.100e-59
Identity = 145/317 (45.74%), Postives = 188/317 (59.31%), Query Frame = 0 
Query:   10 GHRTLGEVRMAGSLLAALIKETGRRAKTHSEGLLLGATQALTVAVTDDATETTERALLQMDVTGYVCTGCRDSFYQPLTGVVKQEKVAEATAGTNGEHSVVGWFVARHCVTTKPSLRDLAILRQLGEYVNHQRK----------------GQKGENGG-------------------IEEDKQQQEQQEGGRFLCLPLSAPPLSPRPSDGFSRPAFHSLLVKVRAISHDCTAEYQTYTGGYHSSLLSPPSS-SSSSSSTTTTTGLAGMPSMRPGLRELARTVPPPHVTEYELYVDQVLARLHALVDDIQTEEMALSA 291
            G  +LGEVR+AGSLLA LI+  G+RA   +EGLLLG     TVAVTDD  E  +R  LQ+DVTGYV T  +D+FY+PLTG +   K+AEAT+  N  H +VGW+VAR+  +TKPSLRDLAILR LG+Y+    +                 +K  +G                       D +   + +G  + C  LS  P +P  S   +  A+ + L+KVR +SHD TAEYQ YTGG + SLLSP SS  S +S  +       +PSMRPGL + AR +PPPHVTEYELY+DQ+L  LH LVD+I+ EE+ L A
Sbjct:    2 GSISLGEVRIAGSLLATLIQVVGQRAGRRAEGLLLGDALVHTVAVTDDTQEARDRTDLQLDVTGYVSTNQKDAFYEPLTGTMNATKIAEATSEVNRRHRMVGWYVARNTASTKPSLRDLAILRHLGDYLRSTSREDDAEALRGESRTPSEAKKSSSGTTLDRRGKDPALAFPAVLIVFSLDLRSSSEAQGISYACHYLS--PAAPFSSSESASLAYQTHLLKVRNVSHDSTAEYQAYTGGTYPSLLSPHSSLPSRTSQPSARMPSPVIPSMRPGLADFARAIPPPHVTEYELYLDQILEHLHGLVDEIRAEELELRA 316
The following BLAST results are available for this feature:
BLAST of NO29G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853607.15.100e-5945.74hypothetical protein NGA_0670320 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01670NO29G01670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01670.1NO29G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01670.1.cds1NO29G01670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01670.1.cds2NO29G01670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G01670.1.cds3NO29G01670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01670.1 ID=NO29G01670.1|Name=NO29G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1377bp
ATGGTACTCACCACCACCACCGCCGACGGCCATCGTACCCTTGGTGAGGT
TCGCATGGCGGGTTCCCTTTTGGCTGCACTGATAAAGGAAACGGGGCGAA
GAGCAAAAACACACTCGGAGGGGTTGCTGCTGGGGGCGACGCAAGCCTTG
ACTGTGGCAGTTACTGACGACGCCACGGAAACCACGGAGCGGGCATTGTT
GCAGATGGATGTGACAGGTTATGTGTGCACGGGGTGCCGGGATTCGTTTT
ATCAGCCTTTGACAGGAGTGGTGAAACAGGAAAAGGTGGCGGAGGCGACG
GCGGGGACGAATGGGGAGCATAGCGTGGTTGGCTGGTTCGTTGCCCGACA
TTGCGTCACCACCAAGCCCAGCCTACGGGACCTGGCCATCTTGAGACAGC
TGGGGGAATACGTCAATCATCAACGAAAAGGGCAGAAAGGAGAGAATGGC
GGGATAGAAGAGGACAAGCAGCAACAAGAACAACAAGAAGGAGGGCGTTT
CCTATGCCTGCCACTATCTGCCCCCCCCCTCTCTCCACGGCCCTCAGACG
GCTTTTCCCGCCCCGCCTTCCACTCGCTCCTCGTCAAGGTCCGTGCTATC
TCCCACGACTGCACCGCTGAATACCAAACTTACACGGGAGGATATCATTC
CTCCCTCCTTTCTCCCCCGTCCTCCTCCTCTTCCTCCTCCTCTACCACCA
CCACCACCGGTCTGGCCGGGATGCCCTCCATGCGTCCTGGCTTAAGGGAG
CTGGCAAGGACTGTCCCTCCTCCTCACGTCACAGAGTATGAACTGTACGT
GGATCAAGTTTTAGCGCGATTGCACGCCTTGGTGGATGACATTCAGACAG
AAGAGATGGCTTTGAGTGCGTTGAAAGAAAAATGGCGGCAGATGCGGCGA
GTCCTGCGCAAGGAGAAGAGGGCGGAGGGGGAGAAGGAAGGGAAGGAGGG
GTGAAGATGAGAGCGGGAGACAAAAGTACATACACCACAGTATGCGATTC
GTGCGTCGTAGACCGGTTGCTCGATACGCCAACGACATGCTTTGGGCGCC
ACCTTGGCACGCCATCTTCGTTGTGCGCAATGCTTAGCAGGGACATCCTG
GGAGTGAATGGGAACAGGTATGGTATAAATAGTGAAAGTGGGAGGGATGG
GGGTGGGATTCCAAACATAGATACATACACCATACTGTGATTCAAGATAT
AGATAAATAAATCACGCTGTGATTCAAGATATAGATACATGCACCACGCT
GAAATTCAAGACATAGTTATATGCACTACGCTGCGATTCGAGACATAGGT
ACATACACCATACCGAGATACGGACTCTACAGAAAATTATTTTAGTTTTT
TGTTCTTTTGGGGGGAAGGCATGATTC
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protein sequence of NO29G01670.1

>NO29G01670.1-protein ID=NO29G01670.1-protein|Name=NO29G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MVLTTTTADGHRTLGEVRMAGSLLAALIKETGRRAKTHSEGLLLGATQAL
TVAVTDDATETTERALLQMDVTGYVCTGCRDSFYQPLTGVVKQEKVAEAT
AGTNGEHSVVGWFVARHCVTTKPSLRDLAILRQLGEYVNHQRKGQKGENG
GIEEDKQQQEQQEGGRFLCLPLSAPPLSPRPSDGFSRPAFHSLLVKVRAI
SHDCTAEYQTYTGGYHSSLLSPPSSSSSSSSTTTTTGLAGMPSMRPGLRE
LARTVPPPHVTEYELYVDQVLARLHALVDDIQTEEMALSALKEKWRQMRR
VLRKEKRAEGEKEGKEG*
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mRNA from alignment at chr29:524833..526988-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01670.1 ID=NO29G01670.1|Name=NO29G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2156bp|location=Sequence derived from alignment at chr29:524833..526988- (Nannochloropsis oceanica)
ATGGTACTCACCACCACCACCGCCGACGGCCATCGTACCCTTGGTGAGGT
TCGCATGGCGGGTTCCCTTTTGGCTGCACTGATAAAGGAAACGGGGCGAA
GAGCAAAAACACACTCGGAGGGGTTGCTGCTGGGGGCGACGCAAGCCTTG
ACTGTGGCAGTTACTGACGACGCCACGGAAACCACGGAGCGGGCATTGTT
GCAGATGGATGTGACAGGTTATGTGTGCACGGGGTGCCGGGATTCGTTTT
ATCAGCCTTTGACAGGAGTGGTGAAACAGGAAAAGGTGGCGGAGGCGACG
GCGGGGACGAATGGGGAGCATGTACGTAGACGTGCAAGAGGAACGAGGGG
AGAAAGAGGTGTGATAATGTGAAAAATGGGCAAGAACTACATCGAATTAA
CGCGTTTTTGGCCCAAAACTTGTTTCTTATTAAATCCTGCCACACCCATC
CCTCCCTCTATCCCTCACTCCCTTCCTCAGAGCGTGGTTGGCTGGTTCGT
TGCCCGACATTGCGTCACCACCAAGCCCAGCCTACGGGACCTGGCCATCT
TGAGACAGCTGGGGGAATACGTCAATCATCAACGAAAAGGGCAGAAAGGA
GAGAATGGCGGGATAGAAGAGGACAAGCAGCAACAAGAACAACAAGAAGG
AGGGTGCGGAGGAGGCGGCGGAAGCACTCTCCCATCTCCCACCCCCTGGA
CCCCAGTAGTTCTCATCGTCTTCTCCCTCGACCTCCAACCCACATCCGAA
ACCCAAGGCGTTTCCTATGCCTGCCACTATCTGCCCCCCCCCTCTCTCCA
CGGCCCTCAGACGGCTTTTCCCGCCCCGCCTTCCACTCGCTCCTCGTCAA
GGTCCGTGCTATCTCCCACGACTGCACCGCTGAATACCAAACTTACACGG
GAGGATATCATTCCTCCCTCCTTTCTCCCCCGTCCTCCTCCTCTTCCTCC
TCCTCTACCACCACCACCACCGGTCTGGCCGGGATGCCCTCCATGCGTCC
TGGCTTAAGGGAGCTGGCAAGGACTGTCCCTCCTCCTCACGTCACAGAGT
ATGAACTGTACGTGGATCAAGTTTTAGCGCGATTGCACGCCTTGGTGGAT
GACATTCAGACAGAAGAGATGGCTTTGAGTGCGTTGAAAGAAAAATGGCG
GCAGATGCGGCGAGTCCTGCGCAAGGAGAAGAGGGCGGAGGGGGAGAAGG
AAGGGAAGGAGGGGTGAAGATGAGAGCGGGAGACAAAAGTAAGTACAGGT
CATGTCACAGATTGCATACAATAGTGTGTACTAGCAGCGGAAGAAAAGGA
GAAGAGAAGTTTGTGTAACAAGGCAAAGCAGCAAGGCCTCCCACTAGCTC
CTGGGGCCGGGTTTGCCTCTGGCGCTAGAAAAGAATATGTTTGGTTGCAC
ATCGCTGTTTTTAATTTTTGAATTTCATCACCAAGTTTAGAGTTTCCTAA
TGAAGCAGCCCCGGCACAGCTTTGAGCTGCTGGTGATATAGCCCGCGTAT
GCCCCTGTCGTTCGCCTCCTTGTCGAGGCGAAACGACAGGGGCATATGCA
GCGGTCAGACCGTCGGAGACCAGCCTCCCATCATCATGTCTCTCTCTACT
TCCGTCTTTGCCCCATTGCAAGATACGAATGCAGGGAGAGAGTGGCGAAT
GCAGCGGGGCAGCTGTCTTTTGTTCCGCTGTCTTTTGGAAAGGTCATTGT
TGAGTAAAGAGCTCTTCCTCCTCCACCTCCTCCTCCTCCTCCTCCTAAAC
ATAGGTACATACACCACAGTATGCGATTCGTGCGTCGTAGACCGGTTGCT
CGATACGCCAACGACATGCTTTGGGCGCCACCTTGGCACGCCATCTTCGT
TGTGCGCAATGCTTAGCAGGGACATCCTGGGAGTGAATGGGAACAGGTAT
GGTATAAATAGTGAAAGTGGGAGGGATGGGGGTGGGATTCCAAACATAGA
TACATACACCATACTGTGATTCAAGATATAGATAAATAAATCACGCTGTG
ATTCAAGATATAGATACATGCACCACGCTGAAATTCAAGACATAGTTATA
TGCACTACGCTGCGATTCGAGACATAGGTACATACACCATACCGAGATAC
GGACTCTACAGAAAATTATTTTAGTTTTTTGTTCTTTTGGGGGGAAGGCA
TGATTC
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Coding sequence (CDS) from alignment at chr29:524833..526988-

>NO29G01670.1 ID=NO29G01670.1|Name=NO29G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr29:524833..526988- (Nannochloropsis oceanica)
ATGGTACTCACCACCACCACCGCCGACGGCCATCGTACCCTTGGTGAGGT
TCGCATGGCGGGTTCCCTTTTGGCTGCACTGATAAAGGAAACGGGGCGAA
GAGCAAAAACACACTCGGAGGGGTTGCTGCTGGGGGCGACGCAAGCCTTG
ACTGTGGCAGTTACTGACGACGCCACGGAAACCACGGAGCGGGCATTGTT
GCAGATGGATGTGACAGGTTATGTGTGCACGGGGTGCCGGGATTCGTTTT
ATCAGCCTTTGACAGGAGTGGTGAAACAGGAAAAGGTGGCGGAGGCGACG
GCGGGGACGAATGGGGAGCATAGCGTGGTTGGCTGGTTCGTTGCCCGACA
TTGCGTCACCACCAAGCCCAGCCTACGGGACCTGGCCATCTTGAGACAGC
TGGGGGAATACGTCAATCATCAACGAAAAGGGCAGAAAGGAGAGAATGGC
GGGATAGAAGAGGACAAGCAGCAACAAGAACAACAAGAAGGAGGGCGTTT
CCTATGCCTGCCACTATCTGCCCCCCCCCTCTCTCCACGGCCCTCAGACG
GCTTTTCCCGCCCCGCCTTCCACTCGCTCCTCGTCAAGGTCCGTGCTATC
TCCCACGACTGCACCGCTGAATACCAAACTTACACGGGAGGATATCATTC
CTCCCTCCTTTCTCCCCCGTCCTCCTCCTCTTCCTCCTCCTCTACCACCA
CCACCACCGGTCTGGCCGGGATGCCCTCCATGCGTCCTGGCTTAAGGGAG
CTGGCAAGGACTGTCCCTCCTCCTCACGTCACAGAGTATGAACTGTACGT
GGATCAAGTTTTAGCGCGATTGCACGCCTTGGTGGATGACATTCAGACAG
AAGAGATGGCTTTGAGTGCGTTGAAAGAAAAATGGCGGCAGATGCGGCGA
GTCCTGCGCAAGGAGAAGAGGGCGGAGGGGGAGAAGGAAGGGAAGGAGGG
GTGA
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Synonyms
Publications