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Properties
| Property Name | Value |
|---|
| Description | Transcription intermediary factor 1-alpha |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr29 | genome | chr29:505370..511573 + |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000228 | nuclear chromosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006338 | chromatin remodeling |
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006939 | SNF5 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
Homology
BLAST of NO29G01620 vs. NCBI_GenBank
Match: EWM21344.1 (transcription intermediary factor 1-alpha [Nannochloropsis gaditana]) HSP 1 Score: 253.4 bits (646), Expect = 2.200e-63 Identity = 228/470 (48.51%), Postives = 266/470 (56.60%), Query Frame = 0
Query: 242 LKDHLDPVIDSVLPLLPFQLHLLLEALSREAQRVCRHLLPHTPAGLIQKQQCCHGCKHAQEKLLSYCPRGYLSHALCELHFRRHHHDMSHEEGLALFEEQGQPRLRLDE---------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATHPLCVVCTLQCPCKPCRRASVRRALDVLRRTLNLKAGRAATDDGDLLSLLTSHPHALSRTGPLEVEHSLFAEDVWRVFTGQAEEGSVFRTTTKNLLKHSVDPALLPPLGGSRPTHATAAAPAGTAVTTRGPASFPALLLPSLDLPLLLTLQAYLQAINKASRGVPPPPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYPFPPSLHPQHYPSFIAD---VANAVA 688
+KDHLD ++ VLPL+P QLH++LEALSREAQRVC HL PHTP GLIQ +QCCHGCKHAQ+KL++YCPRGY SHALCELHF RHH ++S EGLALF +GQPRL +++ XXXXXXXXXXXXXXXXXXXXXX + HPLC+VC+LQCPCKPCRR ++RRALD+LRR LNLKAGRAAT+DGDLL +L SHP AL+R+G L V HSL +DV R GQ EE ++ ++ +K T L TL AYL AI+KA+RGVP P R XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYPFPPSL + YP+F+ ANA+A
Sbjct: 1 MKDHLDVALEPVLPLIPLQLHVILEALSREAQRVCLHLAPHTPQGLIQSKQCCHGCKHAQDKLVAYCPRGYQSHALCELHFSRHHQNLSQREGLALFRARGQPRLSVEQKVEGAVKEEMREEAGGSREAARGGKGVEGXXXXXXXXXXXXXXXXXXXXXXEETARVTLEAIREKLQPSASSLLASSSMKPSDSPVGGVGPLQSLGGLAAALTSSSTTPAGSLHPLCLVCSLQCPCKPCRRQTLRRALDILRRALNLKAGRAATEDGDLLDVLGSHPLALARSG-LSVAHSLLEDDVRRGLRGQMEEKALAKSASK--------------------TMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQTLLAYLGAIDKAARGVPAPARALPSARLSPDERKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYPFPPSLQLRDYPAFLTTAMAAANALA 449
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO29G01620 ID=NO29G01620|Name=NO29G01620|organism=Nannochloropsis oceanica|type=gene|length=6204bp
CTAGGAATCAATTAGACTTCCAGTAGTCACACCCTTAACTTTTCCTTTTC
GGTAGGCACGGCAGAGTCTGTGTCCATGGCACGGCTTGTGCTCACAATAC
CGACCGCTCACTCTCTCTCTGTCTCTCTTCCTCTGGTCTCCTTCCTGAAT
TAACTAGATTTCTCGATATTTCATCTTGAATAAATGGACACCGTGACTCT
TCCTTGCTGCTATCTCTAAAGTTCCAATCAACAAAGTCTGCTATACATTT
TACAAATCTGCCTCCCCTTCCTTCCTCCCTGTCTACGTCGACAGGGCCAA
TGGCTCTGAAAGAGGAGCTGCTCCCTCCTCCTCATCCCCCTTTGCCCTTG
CAGATGCTACTGCAGCTGTTGCTGTGACCATAACTTGTGGCAATGATGCT
TCTTCCACTCTCAGGAAAGACGTCATAGGCTTACCAGCAGCCGCAGCAGC
AGAGGAGGGAGGAGAGGAGGGCGGGAGGGAGAAGGCGGCGTGGAAGGCAC
GGAACTTGGCTGCTTCTCGGGCCAGAGGTCCTTCGAGGTACCGGCCCCAT
TGAGTGAGGATGGCGGCGGGGAGGAGGTCGACGTAGGCGTAGGCCAGCTT
TTATTGAAAAAAGGTGCAACGAGAGGGTGAGGGTTTTGTGCGTTGGGGGA
GGGGTGAGACGAGGAGACGGAGTGTGACCTCATGAAGACACGAGAGAAAG
AGGGAACTGGCCTATCTAGACTCGCAATGCAGGCCCCTCCCCTCGAACAA
CCGACGACCACTGCACGGACAAACACCCGGTACCCCCGAGTGAGTGAGGG
AGCACGTACGTACCTGTAGCGCCGTGGGGGCGTACGGGGCCTGCAAGAGC
CTCATGTTGATCTTGCCCAACTCCTCCACCCGCAGAGACCCCTTCCGGCT
GTTGCACCGCATGCAGGCGCTCGCCAGGTTCTCCCAGCTATCCTCCCCCC
CCAGGCACTTGGGAACTACGTGGTCCAAGGTGAGTGTCCTGTACGACAGG
CGGCACCCGCAGAAGCAACACCGGTATCCGTCTCTCAATGCCACGTTCCG
TCTAAACGGCCTCGGGATGCGCCACGCATGTAAGGCCTCTCCCCCTACGC
CCGCCGCACCCTCCACACCCGGCATCCGCCACGCAGATAGGGTGTCTTCC
CCCACGCCCGCTGCCCCCTCCACACCACTCCAACCACAACTGCTGCTGGT
ACTACCATTACTGCTCCTATTACTAGTATTTCTACTAGTACTTGTACTCG
TACTAGTGCTTGTACTACGACGAGTGCTACTGCTACTACTACTGCTACTA
CTTTGTGCATCAGGAGTAGCGGCAGAAGCGGCAGGAGCATCATCATAATG
CTTGTGGCTATAGCTAGGGGTCTGTAACCGGGTCAAGGCCACTACGGATG
GGAGTTGATGCAAGGCATGCGTCGATCTAACCCGCCTGTCGTAACTTTCC
AACACGCTTACTCGACCGCGCAGGGTACTGCGGATCGCAGACCACCACGG
CGCGATGGTGAGGGGGAAGAGGGTAAGAGGGGTGAGGTCTTGATTAAGGA
CGAGAGCGGGACATCGCAGGTTGGGCTGGCCGAGGCGCCGCCGGACAATG
CCTTCTTCTGCGGCTGCTGCCGTTGCTGCTGCTGCTGCTGTCATACCCGT
GTGCGGATGACTTTCTTTGTGGATGCCATAGTCGTTGATAGAGCTGGCAG
CTGCGAAGAGATTAAGGGATGCATGAGGCCTCAACCGACGCAAGTGGCCT
TCCGCCTCCCATACCTCCTCATTCTCCTCCTCCTCCTCCTCCTCTGCGTG
TCGCTTTTCCCTACGTCTCCCCGCCACTCGTTCTTGCTGCTCCTCTTCCT
CTGCTTGGATTTCCCAGTCTCCATCGTATTGGGGTTGAGGAAGCATGGTT
TGAGCTTCGCGCGCTTCCTCGGGTCTCCAGGAAGACGAGGACGAGGAGGG
TTGTGGGGACGTGGAGGCGACGCCGCGCAAGAAATCCTCCACGGCCGCAG
TCGACGAGAGGGCACGGGTCATGAGCGGAGATGAGGATCGCCGTCGTTTT
GCTGTCGTAGTGATAGTCGTGGTGGTTGCCCGGGGCGTCCGTTGCTGCAA
GCGTCTCAGCAGCATTTCTGTACTGTGTGCCTCAGGGAGGGCGATAATAG
GACTCGACGGCTCGACGGCACTTACTGGATCGGTGCGTTGCGTACCCTAC
CAGCAGTCGAAAGCGTCACCTGGGCGTGAGTGTGTGGACGACGAGTTGAG
TATGGGCTTTCAAAGCGGGTTTAAGCCTTCAGAAATTAAATAAATCGGTC
CTTGCGATGTGAGGGAGAGCAGCCGGGCGACAAATGGGACGGAGGAGCTC
ACGATCGTGGCACAATAAACTTTTCAGCCCTGCCTGTATGATTGCTGTGC
CAGAGGCGGGGCCGTGAGCGTGTGGGGTTTGTGGGCACTATAGTGTGGGA
AGACCTCGTACTGCTGCAGAGGAGCATCATCGTTCGCCAAGCGTCGCAGA
CCGCGATGAAGGCATGATGAAAGAGGGCTGTACGACCGATTTCTTCTCGT
GGACTCGTGGACAAACTAGCACCTCACACAGCAATTTACTACCACACGCA
CACGACCTCACAGGAAACTACCCAAGATAGGGCTGCGGTAAAATTTCCAG
CAGGAGCGCTTATCTGGCCCTTCCTCCCCGCCCATCGAGGCAGCGCACGT
CGCTCTCCCTCGCTTATTCCTTGCTTCCGCGCACGGACAGCACCCCTAAA
TAGTCAGGATCGTAACCTTTGTGTGCGGCAGTAACCATGGTGCAACTTCG
ACCCAAAGGATGGGGATGGGCAGCTATTGgtacgtttaagttgtatgtga
aaagagcttgaccacccctccagcctcccctccctctccccctccccctc
catctcctcccttggttgtcattacttcctctttctcactcttccccccg
ctcctttccaacctacactcacagGACCCATTCACGACATGAATTTGCCC
AAGTCTGCCGCATTTGTTGAAGCGAAGAAGGGTTCCTCCTCGCCCACGCC
CACCCCACTGCCCGAGGTGCGGGTGCATGTCAAGGTGCAGCTGGCGGAAG
GCAGTGAAGACTACTTTGAGGACGACATTGAGTGGGACGTGACCGATACA
CACTTGCCTGAGCCCGAAGCGTGAGTGCCAGGGGGGAGAAGGAGAAAAGG
GAGGAAGGGTTGGGATGCTGGAGGGGTATGGTGGTGGGATGTCTTTGGAT
GCACGTGTCTTGTGTTCGTCCAAGGCAGGCTAGTCTTGACCGAACCACTT
TCCTTGATTTTCTCTCTTGATAATTGGCCGTTATCCATCCTCAAAATTTG
TTTCTCAACCGCTCTCTCCCACCCTCCCTCCCTCCTCCCTTCCAGCTTCG
CCGCCAGTATCGGGCACGAGCTGGGCCTGACGCTGCGGCAAGTGACCTGC
CTCAGCCAGTCCGTCACGGAGCAACTTAAAGCCCTCGCGGCCGCCCATCC
CGAGGCGCTGGAACTGCACTACTCGTACCAAGAGCAGACGCAGCAAGAGA
CTGCGGAGCAGGCCCGGCGGGCGGCCGAGGAGAAAGCCTTGATGATGGCC
GCGGCGAGGCAGACACAGGGGGAGTGGTTTGGGAGGGGGGGAAGAGGGGG
GGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAA
GCGAGTCGGGCGATTGgtacgtttttgggaaggggagggagggagagaag
gagggaaggaggaatggagggagggaggaggggcggggcgtacctgatgg
aggcttcctttcccctccacccgctcactcacaaacactttcgtttgttt
gtcaagaatagagaggtttgggtgttgtcttattctaccactacctctac
tactgctaaatttactagtactactgctattaccactacgatcaccacct
taactaccacctactaccacatcttctcgtcactcatttatctttctcac
tctttttcttcctcccccaccttttcctcttctccttttccttcttcctt
ttcttctttttcttcttctttttcttttgcttgacgttcttcttcttatc
tctctcgctctgtttttttccaacagGAGCCCGGAAGCTGAGGGCGGGGC
AGACGCTGAGTACACGGCCAAGCAGCCGCAGCAACAGCAGCAGCAGCAGC
AGCAACAGCAGCAGCTCTTGTTGTTGCAGGCCCAGCAGGCGGCGGCCAAG
GCAGCCAGGAAGGCTGCTAAGACCATCGgtaggtagcgaagatggcccct
gcgtgtccccttcagggttgtgggaggaaggggagaagaagaaaggagag
ttggtggcagataggaagaagcgtggcatttgcccttcctcgcaactcgc
aacgatggcctgtttctctccgtctcacttcctttccttcctccctgtct
cctgcctagATGTCGGCCTTTTGAAGGACCACTTGGACCCGGTGATCGAT
AGCGTCCTTCCCCTTCTCCCCTTCCAGCTCCACCTCCTCCTCGAGGCGCT
CTCCCGGGAGGCGCAACGTGTCTGCCGCCACCTCCTCCCCCACACTCCAG
CGGGGCTTATTCAGAAGCAGCAGTGTTGCCACGGCTGTAAGCATGCACAg
tgagtggcagggaagaagggggggagggaggggggagggggaaaaagggc
agacaaggactgcagaggaagggcaccttaccctctctcccacctccctc
cctcctcccctcccacgcccctcagAGAGAAATTGCTGTCGTACTGCCCC
CGGGGCTACCTGTCGCATGCCTTGTGTGAGCTGCACTTCAGGCGGCACCA
CCACGACATGAGCCATGAAGAGGGGTTGGCCCTGTTTGAGGAGCAGGGCC
AGCCGCGCTTGAGGCTGGACGAGGAGGAAGAGGAGGAGGGGCGAAAGAAG
AAGAAAGAGTCGAAGGAGGGAAAGGAAGGTGACGATGGTGATGAGGATGG
AGGGAGTGGAAGAGGAGAAAAAGGAGGGGCCAACGAGGACCGAGGGTCCT
CTTCCTCCCCTCTTCGCTCCTCTTCTTCTTCTCCTCCTCCGGGAAGCACC
ACCAAAGGAACGGCAAAAGCAGCAGCAACAGCAAAAATATCCAGAGCCAG
CTTCAGCACCATCTCTTCTCCTCCTCCCCCTCGTCCTCCCACCGCCACCC
ACCCCCTGTGCGTGGTGTGCACCCTCCAATGTCCCTGCAAGCCCTGTCGC
CGTGCCTCCGTCCGTCGGGCCCTCGACGTCCTCCGTCGCACCCTCAATCT
CAAGGCCGGCCGGGCCGCCACAGATGACGGGGACTTACTCTCCCTCCTCA
CCTCCCATCCCCACGCACTCTCCCGCACTGGCCCCCTTGAGGTGGAACAC
TCCCTCTTTGCTGAGGATGTCTGGAGGGTCTTCACGGGCCAGGCGGAGGA
GGGGAGCGTCTTCCGGACGACCACCAAGAACCTGCTCAAACACAGCGTTG
ACCCCGCTCTTCTCCCCCCCCTGGGCGGTTCCCGTCCCACTCATGCCACG
GCTGCTGCGCCTGCTGGTACTGCTGTCACGACTCGGGGCCCTGCTTCCTT
CCCCGCCCTCCTCCTCCCCTCCCTGGACTTACCCCTTCTCCTCACTCTCC
AGGCCTACCTGCAAGCCATCAACAAAGCCTCCCGCGGCGTCCCACCCCCT
CCTCGCCCCATTCCCACCTCCCGCCTAACCCCCGCCGCGAAGAAAGAAGC
GCGCCTTGCCTCAAGGCTCAGGCAGCGGGCCACGGCTAAAGCCAATCGGC
AGGCCAAGCGGCAGGCGAAGCAGGCAGCCCGGATCTTGGCGCACGCAGCT
GTCGCGGCAGGGTATCCGTTTCCTCCCTCCCTTCACCCCCAGCACTATCC
GTCATTCATCGCGGACGTGGCAAATGCTGTTGCGGGCGGGAATGGGAAGC
CCTTCCCTCCCTCCCTCCCTCCCTTCCCTCCCGGGTTCGAAGGCGGGAAG
TACCTGGCGTCGATGGAGAGAGCAATGGCGGAGGCGCGGGGAGCAGCAGG
GGGAGGAGGGGCAGCAGGAGGGGCAGGAGGTCTGGAGGAAGATAGTGCGG
CGAGCTTGGCGTTGATCTTACAGGGGGTCAAGCCGGGCTTCGATCCTCTG
AGTCGCGCAGGGGGGGAGGAGGGGGAGGGAATGGGTGGGGGGGGAAGAGG
GTGA back to topprotein sequence of NO29G01620.1 >NO29G01620.1-protein ID=NO29G01620.1-protein|Name=NO29G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=777bp
MVQLRPKGWGWAAIGPIHDMNLPKSAAFVEAKKGSSSPTPTPLPEVRVHV
KVQLAEGSEDYFEDDIEWDVTDTHLPEPEAFAASIGHELGLTLRQVTCLS
QSVTEQLKALAAAHPEALELHYSYQEQTQQETAEQARRAAEEKALMMAAA
RQTQGEWFGRGGRGGGGGGGGGGGGGGGGGGSESGDWSPEAEGGADAEYT
AKQPQQQQQQQQQQQQLLLLQAQQAAAKAARKAAKTIDVGLLKDHLDPVI
DSVLPLLPFQLHLLLEALSREAQRVCRHLLPHTPAGLIQKQQCCHGCKHA
QEKLLSYCPRGYLSHALCELHFRRHHHDMSHEEGLALFEEQGQPRLRLDE
EEEEEGRKKKKESKEGKEGDDGDEDGGSGRGEKGGANEDRGSSSSPLRSS
SSSPPPGSTTKGTAKAAATAKISRASFSTISSPPPPRPPTATHPLCVVCT
LQCPCKPCRRASVRRALDVLRRTLNLKAGRAATDDGDLLSLLTSHPHALS
RTGPLEVEHSLFAEDVWRVFTGQAEEGSVFRTTTKNLLKHSVDPALLPPL
GGSRPTHATAAAPAGTAVTTRGPASFPALLLPSLDLPLLLTLQAYLQAIN
KASRGVPPPPRPIPTSRLTPAAKKEARLASRLRQRATAKANRQAKRQAKQ
AARILAHAAVAAGYPFPPSLHPQHYPSFIADVANAVAGGNGKPFPPSLPP
FPPGFEGGKYLASMERAMAEARGAAGGGGAAGGAGGLEEDSAASLALILQ
GVKPGFDPLSRAGGEEGEGMGGGGRG* back to topprotein sequence of NO29G01620.2 >NO29G01620.2-protein ID=NO29G01620.2-protein|Name=NO29G01620.2|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MMAAARQTQGEWFGRGGRGGGGGGGGGGGGGGGGGGSESGDWSPEAEGGA
DAEYTAKQPQQQQQQQQQQQQLLLLQAQQAAAKAARKAAKTIDVGLLKDH
LDPVIDSVLPLLPFQLHLLLEALSREAQRVCRHLLPHTPAGLIQKQQCCH
GCKHAQEKLLSYCPRGYLSHALCELHFRRHHHDMSHEEGLALFEEQGQPR
LRLDEEEEEEGRKKKKESKEGKEGDDGDEDGGSGRGEKGGANEDRGSSSS
PLRSSSSSPPPGSTTKGTAKAAATAKISRASFSTISSPPPPRPPTATHPL
CVVCTLQCPCKPCRRASVRRALDVLRRTLNLKAGRAATDDGDLLSLLTSH
PHALSRTGPLEVEHSLFAEDVWRVFTGQAEEGSVFRTTTKNLLKHSVDPA
LLPPLGGSRPTHATAAAPAGTAVTTRGPASFPALLLPSLDLPLLLTLQAY
LQAINKASRGVPPPPRPIPTSRLTPAAKKEARLASRLRQRATAKANRQAK
RQAKQAARILAHAAVAAGYPFPPSLHPQHYPSFIADVANAVAGGNGKPFP
PSLPPFPPGFEGGKYLASMERAMAEARGAAGGGGAAGGAGGLEEDSAASL
ALILQGVKPGFDPLSRAGGEEGEGMGGGGRG* back to top
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