NO29G01030, NO29G01030 (gene) Nannochloropsis oceanica

Overview
NameNO29G01030
Unique NameNO29G01030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length267
Alignment locationchr29:353257..353523 +

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Properties
Property NameValue
DescriptionSmall nuclear ribonucleoprotein e
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:353257..353523 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO:0016043cellular component organization
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR027078snRNP-E
IPR001163Ribonucl_LSM
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Homology
[Close]
BLAST of NO29G01030 vs. NCBI_GenBank
Match: EWM21320.1 (small nuclear ribonucleoprotein e [Nannochloropsis gaditana])

HSP 1 Score: 170.6 bits (431), Expect = 2.100e-39
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0 
Query:    1 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQSSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPKE 89
            MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQ+SVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK+
Sbjct:   73 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPKD 160
[Close]
BLAST of NO29G01030 vs. NCBI_GenBank
Match: XP_005650459.1 (small nuclear ribonucleo protein E [Coccomyxa subellipsoidea C-169] >EIE25915.1 small nuclear ribonucleo protein E [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 125.9 bits (315), Expect = 6.100e-26
Identity = 58/83 (69.88%), Postives = 76/83 (91.57%), Query Frame = 0 
Query:    1 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQSSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQ 84
            M++KVK++MTQPI++IFR LQ +Q++Q+WLYEQ+ +R+EG++IGFDEYMN+VLDEAEEV  K+ TRKALGRILLKGD ITL+Q
Sbjct:    1 MATKVKRIMTQPINLIFRFLQSRQKVQIWLYEQTDLRIEGRIIGFDEYMNLVLDEAEEVSMKRKTRKALGRILLKGDNITLMQ 83
[Close]
BLAST of NO29G01030 vs. NCBI_GenBank
Match: XP_021989873.1 (small nuclear ribonucleoprotein E-like [Helianthus annuus] >OTG12614.1 putative small nuclear ribonucleoprotein family protein [Helianthus annuus])

HSP 1 Score: 125.6 bits (314), Expect = 7.900e-26
Identity = 59/87 (67.82%), Postives = 76/87 (87.36%), Query Frame = 0 
Query:    1 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQSSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 88
            M++KV+++MTQPI++IFR LQ K R+Q+WL+EQ  +R+EG++IGFDEYMN+VLDEAEEV  KK TRKALGRILLKGD ITL+ +A K
Sbjct:    1 MATKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSIKKKTRKALGRILLKGDNITLMMNAGK 87
[Close]
BLAST of NO29G01030 vs. NCBI_GenBank
Match: XP_005845956.1 (hypothetical protein CHLNCDRAFT_36210 [Chlorella variabilis] >EFN53854.1 hypothetical protein CHLNCDRAFT_36210 [Chlorella variabilis])

HSP 1 Score: 124.4 bits (311), Expect = 1.800e-25
Identity = 58/85 (68.24%), Postives = 74/85 (87.06%), Query Frame = 0 
Query:    1 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQSSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHA 86
            M  KVK++MTQPI++IFR LQ +Q++Q+WLYE + +R+EG++IGFDEYMN+VLDEAEEV  K+ TRKALGRILLKGD ITL+Q A
Sbjct:    1 MPPKVKRIMTQPINLIFRFLQSRQKIQIWLYEHNDLRIEGRIIGFDEYMNLVLDEAEEVSVKRKTRKALGRILLKGDTITLMQAA 85
[Close]
BLAST of NO29G01030 vs. NCBI_GenBank
Match: XP_008223535.1 (PREDICTED: small nuclear ribonucleoprotein E [Prunus mume])

HSP 1 Score: 124.4 bits (311), Expect = 1.800e-25
Identity = 58/86 (67.44%), Postives = 74/86 (86.05%), Query Frame = 0 
Query:    2 SSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQSSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 88
            S+KV+++MTQPI++IFR LQ K R+Q+WL+EQ  +R+EG++IGFDEYMN+VLDEAEEV  KK TRKALGRILLKGD ITL+ +  K
Sbjct:    3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSIKKNTRKALGRILLKGDNITLMMNTGK 88
[Close]
BLAST of NO29G01030 vs. NCBI_GenBank
Match: KXZ43545.1 (hypothetical protein GPECTOR_87g407 [Gonium pectorale])

HSP 1 Score: 124.4 bits (311), Expect = 1.800e-25
Identity = 57/83 (68.67%), Postives = 76/83 (91.57%), Query Frame = 0 
Query:    1 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQSSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQ 84
            M++KV+K+MTQPI+++FR LQ KQ++Q+WLY+Q+ +R+EG++IGFDEYMN+VLD+AEEV  K+ TRKALGRILLKGD ITLIQ
Sbjct:    1 MATKVQKIMTQPINLMFRFLQSKQKVQIWLYDQADLRVEGRIIGFDEYMNLVLDDAEEVSMKRKTRKALGRILLKGDNITLIQ 83
[Close]
BLAST of NO29G01030 vs. NCBI_GenBank
Match: XP_012834353.1 (PREDICTED: small nuclear ribonucleoprotein E-like [Erythranthe guttata])

HSP 1 Score: 124.0 bits (310), Expect = 2.300e-25
Identity = 58/86 (67.44%), Postives = 74/86 (86.05%), Query Frame = 0 
Query:    2 SSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQSSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 88
            S+KV+++MTQPI++IFR LQ K R+Q+WL+EQ  VR+EG++IGFDEYMN+VLDEAEEV+ KK TRK LGRILLKGD ITL+ +  K
Sbjct:    3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDVRIEGRIIGFDEYMNLVLDEAEEVNVKKNTRKELGRILLKGDNITLMMNTGK 88
[Close]
BLAST of NO29G01030 vs. NCBI_GenBank
Match: PNH04852.1 (Small nuclear ribonucleoprotein E [Tetrabaena socialis])

HSP 1 Score: 124.0 bits (310), Expect = 2.300e-25
Identity = 57/83 (68.67%), Postives = 75/83 (90.36%), Query Frame = 0 
Query:    1 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQSSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQ 84
            M++KV+K+MTQPI+++FR LQ KQ++Q+WLY+Q+ +R+EG++IGFDEYMN+VLDEAEEV  K+ TRK LGRILLKGD ITLIQ
Sbjct:    8 MATKVQKIMTQPINLMFRFLQSKQKVQIWLYDQTDLRVEGRIIGFDEYMNLVLDEAEEVSMKRKTRKVLGRILLKGDNITLIQ 90
[Close]
BLAST of NO29G01030 vs. NCBI_GenBank
Match: XP_007223835.1 (probable small nuclear ribonucleoprotein E [Prunus persica] >XP_021829825.1 probable small nuclear ribonucleoprotein E [Prunus avium] >XP_021803142.1 probable small nuclear ribonucleoprotein E [Prunus avium] >ONI27556.1 hypothetical protein PRUPE_1G094500 [Prunus persica])

HSP 1 Score: 123.2 bits (308), Expect = 3.900e-25
Identity = 57/86 (66.28%), Postives = 74/86 (86.05%), Query Frame = 0 
Query:    2 SSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQSSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 88
            S+KV+++MTQPI++IFR LQ K R+Q+WL+EQ  +R+EG++IGFDEYMN+VLDEAEEV  KK TRK+LGRILLKGD ITL+ +  K
Sbjct:    3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSIKKNTRKSLGRILLKGDNITLMMNTGK 88
[Close]
BLAST of NO29G01030 vs. NCBI_GenBank
Match: GAQ86756.1 (small nuclear ribonucleoprotein E [Klebsormidium nitens])

HSP 1 Score: 123.2 bits (308), Expect = 3.900e-25
Identity = 57/86 (66.28%), Postives = 76/86 (88.37%), Query Frame = 0 
Query:    2 SSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQSSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK 88
            S+KV+++MTQPI++IFR LQ K R+Q+WL+EQS +R+EG++IGFDEYMN+VLD+AEEV  K+ TRK+LGRILLKGD ITL+Q+  K
Sbjct:    3 STKVQRIMTQPINLIFRFLQSKARIQIWLFEQSDLRIEGRIIGFDEYMNLVLDDAEEVSVKRKTRKSLGRILLKGDNITLMQNIGK 88
The following BLAST results are available for this feature:
BLAST of NO29G01030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21320.12.100e-3997.73small nuclear ribonucleoprotein e [Nannochloropsis... [more]
XP_005650459.16.100e-2669.88small nuclear ribonucleo protein E [Coccomyxa sube... [more]
XP_021989873.17.900e-2667.82small nuclear ribonucleoprotein E-like [Helianthus... [more]
XP_005845956.11.800e-2568.24hypothetical protein CHLNCDRAFT_36210 [Chlorella v... [more]
XP_008223535.11.800e-2567.44PREDICTED: small nuclear ribonucleoprotein E [Prun... [more]
KXZ43545.11.800e-2568.67hypothetical protein GPECTOR_87g407 [Gonium pector... [more]
XP_012834353.12.300e-2567.44PREDICTED: small nuclear ribonucleoprotein E-like ... [more]
PNH04852.12.300e-2568.67Small nuclear ribonucleoprotein E [Tetrabaena soci... [more]
XP_007223835.13.900e-2566.28probable small nuclear ribonucleoprotein E [Prunus... [more]
GAQ86756.13.900e-2566.28small nuclear ribonucleoprotein E [Klebsormidium n... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005224NSK005224Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G01030.1NO29G01030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601419gene_8277Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100214g4gene9103Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G01030.1NO29G01030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G01030 ID=NO29G01030|Name=NO29G01030|organism=Nannochloropsis oceanica|type=gene|length=267bp
ATGAGCAGCAAGGTGAAGAAAGTGATGACCCAGCCCATCTCGGTCATTTT
TCGGATGCTACAAGGGAAGCAGCGACTGCAAGTGTGGCTCTACGAGCAGT
CCTCTGTGAGGATGGAAGGGAAGTTGATTGGCTTTGACGAGTACATGAAC
GTAGTGTTGGACGAAGCGGAGGAGGTGGATAGCAAGAAAGGGACACGTAA
GGCCTTGGGAAGGATTTTGTTGAAGGGTGATGCTATAACGTTGATTCAAC
ATGCCCCGAAGGAATAG
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protein sequence of NO29G01030.1

>NO29G01030.1-protein ID=NO29G01030.1-protein|Name=NO29G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQSSVRMEGKLIGFDEYMN
VVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPKE*
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Synonyms
Publications