NO29G01030.1, NO29G01030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G01030.1
Unique NameNO29G01030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length267
Alignment locationchr29:353257..353523 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:353257..353523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G01030.1 vs.
Match: EWM21320.1 (small nuclear ribonucleoprotein e [Nannochloropsis gaditana])

HSP 1 Score: 170.6 bits (431), Expect = 2.100e-39
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 0 
Query:    1 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQSSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPKE 89
            MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQ+SVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPK+
Sbjct:   73 MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQTSVRMEGKLIGFDEYMNVVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPKD 160
The following BLAST results are available for this feature:
BLAST of NO29G01030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21320.12.100e-3997.73small nuclear ribonucleoprotein e [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G01030NO29G01030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G01030.1NO29G01030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G01030.1.cds1NO29G01030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G01030.1 ID=NO29G01030.1|Name=NO29G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=267bp
ATGAGCAGCAAGGTGAAGAAAGTGATGACCCAGCCCATCTCGGTCATTTT
TCGGATGCTACAAGGGAAGCAGCGACTGCAAGTGTGGCTCTACGAGCAGT
CCTCTGTGAGGATGGAAGGGAAGTTGATTGGCTTTGACGAGTACATGAAC
GTAGTGTTGGACGAAGCGGAGGAGGTGGATAGCAAGAAAGGGACACGTAA
GGCCTTGGGAAGGATTTTGTTGAAGGGTGATGCTATAACGTTGATTCAAC
ATGCCCCGAAGGAATAG
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protein sequence of NO29G01030.1

>NO29G01030.1-protein ID=NO29G01030.1-protein|Name=NO29G01030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MSSKVKKVMTQPISVIFRMLQGKQRLQVWLYEQSSVRMEGKLIGFDEYMN
VVLDEAEEVDSKKGTRKALGRILLKGDAITLIQHAPKE*
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mRNA from alignment at chr29:353257..353523+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01030.1 ID=NO29G01030.1|Name=NO29G01030.1|organism=Nannochloropsis oceanica|type=mRNA|length=267bp|location=Sequence derived from alignment at chr29:353257..353523+ (Nannochloropsis oceanica)
ATGAGCAGCAAGGTGAAGAAAGTGATGACCCAGCCCATCTCGGTCATTTT
TCGGATGCTACAAGGGAAGCAGCGACTGCAAGTGTGGCTCTACGAGCAGT
CCTCTGTGAGGATGGAAGGGAAGTTGATTGGCTTTGACGAGTACATGAAC
GTAGTGTTGGACGAAGCGGAGGAGGTGGATAGCAAGAAAGGGACACGTAA
GGCCTTGGGAAGGATTTTGTTGAAGGGTGATGCTATAACGTTGATTCAAC
ATGCCCCGAAGGAATAG
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Coding sequence (CDS) from alignment at chr29:353257..353523+

>NO29G01030.1 ID=NO29G01030.1|Name=NO29G01030.1|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at chr29:353257..353523+ (Nannochloropsis oceanica)
ATGAGCAGCAAGGTGAAGAAAGTGATGACCCAGCCCATCTCGGTCATTTT
TCGGATGCTACAAGGGAAGCAGCGACTGCAAGTGTGGCTCTACGAGCAGT
CCTCTGTGAGGATGGAAGGGAAGTTGATTGGCTTTGACGAGTACATGAAC
GTAGTGTTGGACGAAGCGGAGGAGGTGGATAGCAAGAAAGGGACACGTAA
GGCCTTGGGAAGGATTTTGTTGAAGGGTGATGCTATAACGTTGATTCAAC
ATGCCCCGAAGGAATAG
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Synonyms
Publications