NO29G00410, NO29G00410 (gene) Nannochloropsis oceanica

Overview
NameNO29G00410
Unique NameNO29G00410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4453
Alignment locationchr29:162893..167345 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:162893..167345 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO29G00410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL061nonsL061Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR038ncniR038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR081ngnoR081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005139NSK005139Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO29G00410.1NO29G00410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673185gene_8213Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO29G00410.1NO29G00410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO29G00410 ID=NO29G00410|Name=NO29G00410|organism=Nannochloropsis oceanica|type=gene|length=4453bp
GGAGGCGTTCTGAGCACGTCCTTGCAAGATATTTCTTCACAATAACATCT
TACTGAGAAAGCTGTCTAAGGTGTTTCCCACACCGCCACCGCCAGACATG
CACGCATTGAATTATTTGCTTCGTGTCTTGGTACTTGGTTTAATTTGTGG
CACAGTTTTAAGTCTTTGGGATCCACCAGGGAGGCTAGCAGCAGGGATCA
AGCAACCGACTTTTGATGGGCCACAGAGCTTGTTACGAAGGACCGGCCCA
CACTCATCCATCCCGCACATCGCCTCTTGCAGTCTCATGCCTTGGGCGTC
GCCTGCCAAACTTTCAGGCAGTTTTTTTGCACATGTCTATCTTTCTTGTG
TCTCCTGGTCATTGAAGCGGATCGGAGGGCGGCCCTGTGTCGCGGCACAC
GCTGGTGAAGTGGGAGAAAAGAAGGGCATGGCCATGCGAATGCTAGCATG
CACCACACGTCAGGATCCAACCCCTTGTGTCCCCTCCCTCGGGCTGTGCG
CCCACCAACCCAAGCTCACCTACCCAAACATATCTATTCTACTTACAGCT
TTGGTGGTTTGGTGCGTCCGCTGCACCTGCCTTTGCCAATCAACACTCAA
GCAGAAGAGCAACACAGGGGGAAGAGTCGAAAGAAAAAAGAAGTGATGCC
CGTCGCCGCTGTGAATGGCACTGGCTCCGCCCCCGGCGGAGGGGGGGGAG
GAGAAATGgtacgtaacttttgggcatcctatgtgtatatcgcatgtggc
ctgggggattgggattgctggatgcgttgcctgagtgttgtgaccggccc
agacaagcatggcccgcccggcaagcgcagaaaaaatcttttccccccct
catggcctcttcaccgatgcccgcaagcctaacgatgcctttgcgcccac
caacccacactacatcttcccaccacatttatgcatgtgtttgagtgccc
cctgtggttgtcaccgtgtccaggaccgcgggaaaaaaatattcatccct
gcccatatattcacttactgctcccttcctccctccctccctcccactgc
gcacaaccacactgaccaccgaccagtactatacactcacctatatttat
tattacacaacaagcacgacaagtaactattccttatttttacctgtcgg
cctcacttcgctttctcttctctacctcaccttcaacactacctccctcc
atccctccctcctttccactcttcccacagGACCCCGAACTCGCTCATGC
TGAGGAGACGCTGCTGATGATGAAGAAGGCTCCAGCCGCTGCCGCTGCTG
CGGGCGCCGCCGGTCGGAAAGGTGCTTTTCACATTCCTCCAATGACGCCC
ACCGGGGCTGCGTTTCAAGGACGTCGGGGAGGAGCAGGGGGGGAGTGGTG
AGCAGTCGGACGGGACGGAAGCCACGAGCGGCATCTGCAGGAGTTGCAGG
TGCGACAGCTGCTGTTGCTGCTGCAAATGCTGCTGCTGGTCTGACGGGAG
AAAGGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGGATAGGAGGAGGAGGG
AAGCGGAAGCGCAATGCGACCCCGTCCGACTTGTGCCAGCGGTGTCAGAT
GGAGGGGCTGCAGCGGGGGATCACGCACTGGCATAAAGATGCGAGTCGAA
GCACGGGTGGGATTTGCAAGGAGCATGCCTTTGAGgtaggtctctctcgt
tttggttcggaacttcgtccctccctccctccctccctctttccttcact
ccctccctccacccctctttcagtttaattgccttctgtcgcatacacga
tgggcggggctgcgaaagctgctggagcatcctgcgttatgccacgcatg
gttcctcaggagagccaaaaactgactctctccctccctccctccctccc
tccctccctccctccagCTGCACAACGCGGACCCCCGTTCATTCGCCTCC
TCTTACCGCATGCGTCACGGTCGGGCCTGCGAGCGCTGCGGCATTTTGCG
GCGGGCCACGCATGGTTATCTCGGTGAGGGGGTCTCGCGGTTCTGCGGCG
AGTGTGCAGGGACAGCTCGAGGGTGCATCGATTTGAATAATTTTAAATGC
AAACTTCAAGGGTGTAACCGTATGGCCCGTTTCATTGGGGAGGAACCGCA
AATTTTTGGGGGGGGAGGAAGCGGCGGAGGAGGGCAGGGAGGAAGGGGGG
GAGGGCCGGGTCGACTGGTGTTCCGTTGCTGGGCCCATAAACAGCCCGAG
ATGAAGGAGGCAGGGGAAGGGTGGAAGGAGTTCTATCGACTTTTTTGCCT
GAGGACGGGAGCCACGGGCGTGGTGCCTGTACCTCCCATTCCTCCCCCTC
CTCCAAGTCCGTCGGTCCACGCAGCAGCGGTTGCAGTGGGGGGAGGGGGG
GTTTCGCTGGGCTTGCCTCTTGCTTCTCCCCTCCTTCCTATGGCAGGAGC
GTTTTTAGGGGCCGGGGGGAACGCCGAGGGTACCATTGTAAACATGAACG
GAGGCGGATTTGGAGGAGGAGATGGGGGAGGAGGGGGAGGGGAAGGAGGA
GGGCGAGGGGGAGCGTTTCCGCCGGGGGGTCTCCCGGGACCGAGGGTTGA
TGAAGGGGAGAGTGGTGGGGAGGAAGAGGAGGAGGAGGAGGAAGGGAGGA
GGGGGGAGGAAGGGGGGGAGGGAGGGAGGGGAGGAGGGGAGGAGGAGGAA
GAGATGGTGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGG
GGGGCAGGGAAAGGGGGAGGAAGGAAGAAGGGAAGTGGGGGCCGGCCACC
CGCTCACCGGGAGATTTAGAAGAAGGGAGGGAGGGAGGGAGGGAGGGAGG
ATTACGATCTATCATCTTGCCATTAGTAACGTATCGGTGATATTTTTTGT
TTACGATTTCAGATCTCTGTGTGTGTGTGTGTGTGTGTCTGTGCGTATAT
GTGGGGATGAAAATGAAGGTGAAAAGAAGAAGGAAACGACGAAAAGGCAG
AAGCGGAAGCAACAGAAGCAGAAGCAGAAGATTAATATGAAGGTAAGAGA
GTGAATGAATTAGTTATGCGTGGGTTGGAAAAGTGAGGGAGATATGCGGT
GGAAGGAGTGTGTGGATTATGCGACAAATGAGGAATGCGTCTATCAGAGA
GACAAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAG
AGAGAGACCCAGAGAAGGAAAAAGTGAGTGAGTGAGTGAATGAGTGAGCG
AGGAAGACGACAAGGGAGAGTAAGTGTGTGTGTATCGAGGAAGCAACATA
ACACATGCCTGTCTCCGGCCCAAGATTAAAGTGACTATAAGACTTCAAAC
ATATCCATAAAAATAGGCGGTTGGAAGGAGGGCGAGAGAAGGAGGGTGGG
GGGGAAGGAAAAATGAAGGAAGGGAGGGAAACAGGGCAATGAATGACACC
AAGGAAGGGAGGGATTGCAGGAGCGAGTGAGGAGGAAGCAAATGCAGGAG
AATCACCCTATACTATTGCTTATTATTTTCCTGCTAGGAACTCACTCGCC
GGCTGATTCTTTTGCGGACGGGTCCTTCTTCTTTGTCTCCTTCTGACTGA
GAAGACACCCACGGGAAGGTACGGGAGAAGGAGGAGGACGAGGAGGTAAA
AGGAAAAAAGGGAGAAATGTGCGACAGCAAACAAGAAGCACCCAAAAATT
AAAAAAAAAAGATACGGTAAGATTAAGAAGATGACGGGAAAAGACAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAGAGGAGGAAGAAGTAG
AAGGTGGAGGAGAAGAAGAAGAAGGACTCCACTTTTCCCTTGCCCCCCTT
CTAATGACAATCAATCGATGATCATAACGCTACGCAGAATGAGCCCCGGA
AGCGAGAGAGGACAGAGAGAGGGAAGAAAGAAGGAGAAGAAGAAGAAGTA
AAGAAGTAAGTGTGGTGTGTAGGGGGACGGGACGATGGCAAGTGGAAGGG
CGGCGGCAACAGGCGCGAGAGTGAGATAGATAGGGAGAGAGCGCGCGCAA
TAAGCCGAGGGAGGCTGGGGGGAGAGGCCCCGGCAAAGGACTACAATGAC
AAGAAAAAGAAGAAGAAGCAAAAGGAAAACGAAGTCGATGCCACGACCAA
GAGTAAAAGAGATAAAGCACGCATTGAACTCGATTTGATTTGCACTTTAC
TCACTCTTACCTTTATTAATACATTTTAAATCTAATGTTGGAGGCCTGTC
TTTCTTCACTCTCTTTTCTCATATTCCCCTTTCCTCATATTCCCATCAAT
CTGGCGGTTGTTTCTCTCTTCGTAAAGAAGATGGGGTCCAAGAAATGAAG
GCGAGGGGAGAACAACCACCCAAAACTCTCTTCGAAAAGGAGAAGAGAGG
GCGAGGGGAACGGAGAGGATGACGTCCTTAAACATGAGCATGATGGAGGG
ATA
back to top

protein sequence of NO29G00410.1

>NO29G00410.1-protein ID=NO29G00410.1-protein|Name=NO29G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MEGLQRGITHWHKDASRSTGGICKEHAFELHNADPRSFASSYRMRHGRAC
ERCGILRRATHGYLGEGVSRFCGECAGTARGCIDLNNFKCKLQGCNRMAR
FIGEEPQIFGGGGSGGGGQGGRGGGPGRLVFRCWAHKQPEMKEAGEGWKE
FYRLFCLRTGATGVVPVPPIPPPPPSPSVHAAAVAVGGGGVSLGLPLASP
LLPMAGAFLGAGGNAEGTIVNMNGGGFGGGDGGGGGGEGGGRGGAFPPGG
LPGPRVDEGESGGEEEEEEEEGRRGEEGGEGGRGGGEEEEEMVMEEEEEE
EEEEEEGGQGKGEEGRREVGAGHPLTGRFRRREGGREGGRITIYHLAISN
VSVIFFVYDFRSLCVCVCVSVRICGDENEGEKKKETTKRQKRKQQKQKQK
INMKVRE*
back to top
Synonyms
Publications