NO28G01490, NO28G01490 (gene) Nannochloropsis oceanica

Overview
NameNO28G01490
Unique NameNO28G01490
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4312
Alignment locationchr28:471085..475396 -

Link to JBrowse

Properties
Property NameValue
DescriptionBestrophin/UPF0187
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:471085..475396 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021134Bestrophin/UPF0187
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO28G01490 vs. NCBI_GenBank
Match: EWM20641.1 (Bestrophin/UPF0187 [Nannochloropsis gaditana])

HSP 1 Score: 302.4 bits (773), Expect = 3.800e-78
Identity = 161/292 (55.14%), Postives = 187/292 (64.04%), Query Frame = 0
Query:  423 KFDGDNFILDPTRPRLVDLLTAEEAKLFKRMRVNARPVYMMSEMNLLAYRIISLSKETSIRINIDNKFQEVLSSWNGMLRVVDLRIPFPYTHVVNLLTFIFVFGAPFIYTANAQDWAGDDVILLSSLLLGVAFYGLEDMARKVENPFGWDAEDHDLEGFGIGLNLGKARRTEITKSRGWLKKVRENCYAVSQRATRYHQPFPPCPCTSLSLRSRFYKRHRHLLHTLIPNISPPSSFLPPSFPPTDGQEIAKMCGVVEPMEFMPHAELFDDLTEKYQVISYKEYRHTASVVME 715
            KF+ D F+LDPTRPRLVDLLT EE + F+RM VN+RPVY+++EMNLLAYRI+ LSKETSIRINIDNKFQEVL+ WNGMLRV +LRIPFPYTHVVNLLTFIFVFGAPFIYT+  Q+WA +DV+L +SLLLGVAFYGLEDMARK ++P GWD EDHDLE FG+ LNL                                                                               DGQE+AK+CGV EPMEFMP++ELFDDL + +QV+SYK Y  T SV ME
Sbjct:    6 KFNKDTFVLDPTRPRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLAYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRLNL-------------------------------------------------------------------------------DGQEMAKICGVQEPMEFMPYSELFDDLPDFFQVMSYKSYLQTTSVSME 218          
BLAST of NO28G01490 vs. NCBI_GenBank
Match: EWM20646.1 (Bestrophin/UPF0187, partial [Nannochloropsis gaditana])

HSP 1 Score: 252.7 bits (644), Expect = 3.500e-63
Identity = 129/199 (64.82%), Postives = 156/199 (78.39%), Query Frame = 0
Query:  211 EESLSS--TGKARRRLTRHVTVSQLAEPRVPRKEQHVLSEEKAYPIPHPYPKKLRNKQHRMDRPWSFIKILFYLKGTVIMNIWPQMLLGFLLVASIKILHATLNISYQVNPRIFSIHTILGSTLAFITVFRTNRAYDSYIEGRKLVSAIVNCLRTALMDMYINDPRDERPETREMLVELAEDFRRKSNVLFAFIRQSTR 408
            ++SL S  +G   R L+R  TVSQL  P+VPR+E HVLSE  AY IP PYP+K + +     RPWSFI+ILFY KGTV+ NIWPQ+LLG L++  IK+L +  +++YQVNPRI +IHTILGS L FITVFRTNRAYDSYIEGRK ++ +VN LRTA+MDMYINDPRDE  ETRE+LVELAEDFRRK N+L+AFIR   R
Sbjct:  136 DKSLQSWESGTGGRHLSRTATVSQLVNPKVPRRECHVLSELHAYRIPQPYPRKDQQRSCITTRPWSFIRILFYFKGTVLENIWPQILLGVLVIIFIKVLQSVFDVTYQVNPRISTIHTILGSVLGFITVFRTNRAYDSYIEGRKFIARVVNNLRTAMMDMYINDPRDETLETREILVELAEDFRRKCNILYAFIRSEGR 334          
BLAST of NO28G01490 vs. NCBI_GenBank
Match: XP_002501798.1 (membrane protein [Micromonas commoda] >ACO63056.1 membrane protein [Micromonas commoda])

HSP 1 Score: 149.4 bits (376), Expect = 4.200e-32
Identity = 109/326 (33.44%), Postives = 169/326 (51.84%), Query Frame = 0
Query:  272 PWSFIKILFYLKGTVIMNIWPQMLLG---FLLVASIKILHATLNI-SYQVNPRIFS--IHTILGSTLAFITVFRTNRAYDSYIEGRKLVSAIVNCLRTA--LMDMYINDPRDERPETREMLVELAEDFRRKSNVLFAFIRQSTRECKEGF---CPASDLGDMKFDGDNFILDPT--RPRLVDLLTAEEAKLFKRMRVNARPVYMMSEMNLLA--YRIISLSKETSIRINIDNKFQEVLSSWNGMLRVVDLRIPFPYTHVVNLLTFIFVFGAPFIYTANAQDWAGDDVILLSSLLLGVAFYGLEDMARKVENPFGWDAEDHDLEGFG 583
            P++FI ILF  +GTV+  I PQ LL     +    IKI     NI S+   P  FS   H++ G  + F+ VFRT+ +Y  + EG+K +  + +C+R A    + ++    DE+    ++  +  E  RR SNVL+AFIRQ+ RE + G+   CPA        D    + D    RP L  LLT EE + F  +  N R   ++  M  +   +R +    E     +I +  +  L ++  M R+V  ++PF Y H+VN L FIFVF APF++T   + W       + S ++ ++FYG+ ++AR +E+P+ W    HDL G G
Sbjct: 1047 PFTFITILFRYRGTVLPKIMPQTLLAAAVSIFAQIIKIYWCGANITSHSECPLAFSETAHSVAGGIIGFMLVFRTSISYYRFYEGKKYLGHLYDCIRNANIAFNSFLRVGNDEQGHDAKINADKVE-LRRLSNVLYAFIRQAVREHRHGYPEGCPAPS------DDAGLVRDDVFGRPGLGVLLTDEEKEEFLAIDPNNRANMVVWRMQSIVEHHRRLGHVCERG-AFDIYHDLEGCLEAFKHMERIVSTKMPFQYLHMVNFLLFIFVFSAPFVFTTGFK-WLSP----IPSCIVAISFYGVAEVARSIEDPYSWTKPCHDLTGTG 1359          
BLAST of NO28G01490 vs. NCBI_GenBank
Match: XP_003058502.1 (membrane protein [Micromonas pusilla CCMP1545] >EEH56957.1 membrane protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 137.5 bits (345), Expect = 1.600e-28
Identity = 102/325 (31.38%), Postives = 161/325 (49.54%), Query Frame = 0
Query:  272 PWSFIKILFYLKGTVIMNIWPQMLLGF---LLVASIKILHATLNI-SYQVNPRIFS--IHTILGSTLAFITVFRTNRAYDSYIEGRKLVSAIVNCLRTALM--DMYINDPRDERPET--REMLVELAEDFRRKSNVLFAFIRQSTRECKEGF---CPASDLGDMKFDGDNFILDPTRPRLVDLLTAEEAKLFKRMRVNARPVYMMSEMNLLAYRIISLSKETSI-RINIDNKFQEVLSSWNGMLRVVDLRIPFPYTHVVNLLTFIFVFGAPFIYTANAQDWAGDDVILLSSLLLGVAFYGLEDMARKVENPFGWDAEDHDLEGFG 583
            P +F  +LF  +GTV+  I PQ L      +L   +KI     NI S+   P  FS   H++ G  + F+ VFRT+ +Y  + EG+K +  + + +R A +  + ++    DE         L     + RR S+VL+AFIRQ+ RE + G+   C  +       D D F     RP L  LLT  E   FK +  N R   ++ +M  +      L   +     +I +  +  L ++  M R+V  ++PF Y H+VN L FIFVF APF++T   + W       + S ++ ++FYG+ ++AR +E+P+ W    HDL G G
Sbjct: 1029 PLTFFTVLFRYRGTVLPKIMPQTLFAVFVSVLAQVVKIYWCGANITSHSECPLAFSETAHSVAGGIIGFMLVFRTSISYYRFYEGKKYLGNLYDSVRNANIGFNAFMRSSEDEHVHAGFSHSLNRDRVELRRLSSVLYAFIRQAVREHRHGYPTRCDVAATDASLVDDDLF----GRPSLGVLLTDAERAEFKALDFNNRANMVVWKMQSIVEHHRRLGHVSDRGAFDIYHDLEGCLEAYKHMERIVSTKMPFQYLHMVNFLLFIFVFSAPFVFTTGFK-WLSP----IPSCIVAISFYGVAEVARSIEDPYSWVKPCHDLTGVG 1344          
BLAST of NO28G01490 vs. NCBI_GenBank
Match: XP_009033392.1 (hypothetical protein AURANDRAFT_61213 [Aureococcus anophagefferens] >EGB12347.1 hypothetical protein AURANDRAFT_61213 [Aureococcus anophagefferens])

HSP 1 Score: 127.5 bits (319), Expect = 1.700e-25
Identity = 97/338 (28.70%), Postives = 156/338 (46.15%), Query Frame = 0
Query:  270 DRPWSFIKIL--FYLKGTVIMNIWPQMLLGFLLVASIKILHATLNISYQVNPRIFSIHTILGSTLAFITVFRTNRAYDSYIEGRKLVSAIVNCLRTALMDM------------YINDPRD------ERPETREMLVELAEDFRRKSNVLFAFIRQSTRECKEGFCPASDLGDMKFDGDNFILDPTRPRLVDLLTAEEAKLFKRMRVNARPVYMM-SEMNLLAYRIISLSKETSIRINIDNKFQEVLSSWNGMLRVVDLRIPFPYTHVVNLLTFIFVFG-----APFIYTANAQDWAGDDVILLSSLLLGVAFYGLEDMARKVENPFGWDAEDHDLEGF 582
            D  W FI I    +L G  +  +WP ++    +   I +L   L +    + +      ++G+ L+ + VFRTN AY+ Y EG+K    + N +R  +M+             ++N          ER    E++ EL E  RR++NVL   +RQ  RE + GF P   L ++ ++   +ILDP+RPRLVD+LT  E   +  +   AR +    S M+ L     SL+++ +         QE+L ++    R+VD  +PF YT                  A +  T     W     I L S++    +YG+  +A ++ENPF +   DHDL+GF
Sbjct:    5 DNRWWFIAIFTRTHLVGRFVQQLWPNLVTLVFVNLVINLLD-HLGVKSMPSSQFDITQGLVGAVLSLLLVFRTNSAYERYYEGKKAYGVVTNQVRQIIMNAHAFLAFHEDASGHLNARYQPAAELRERAHEAEVVHELRERVRRQANVLLGVLRQDLREKRCGFVPECALHEVPYNKRTWILDPSRPRLVDMLTPREVATYGTVSSGARVMLASHSLMDALQRLAPSLAQDRAFTECSTRNIQELLDAFKSCQRIVDTPLPFTYTXXXXXXXXXXXXXXXXXVAYWARTEKRLHWYSMSGI-LPSIVTAFFYYGVMQIAIEIENPFNFADVDHDLDGF 340          
BLAST of NO28G01490 vs. NCBI_GenBank
Match: XP_005856043.1 (membrane protein, partial [Nannochloropsis gaditana CCMP526] >EKU20316.1 membrane protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 114.0 bits (284), Expect = 1.900e-21
Identity = 70/204 (34.31%), Postives = 106/204 (51.96%), Query Frame = 0
Query:  290 IWPQMLLGFLLVASIKILHATLN------------ISYQVNPRIFSIHTILGSTLAFITVFRTNRAYDSYIEGRKLVSAIVNCLRTALMDMY---INDPRDERPETR---------EMLVELAEDFRRKSNVLFAFIRQSTRECKEGFCPASDLGDMKFDGDNFILDPTRPRLVDLLTAEEAKLFKRMRVNARPVYMMSEMNLL 470
            +WP +  G       ++L AT++            +  +  P +   H  +GS L F   FRTN AYD Y EGRK++S I+   R+ L D+Y   +  P    P +            ++ ++ D RR+ N+LFAFIRQS RE   GF P SD+G + F    F LDP+ P L+DLL+ EEA+ +  +   ARP  + +E+N++
Sbjct:   72 LWPYIGFGIFSSILAQLLLATVSQEHVEQGSFLTMLDVKDYPDLKIGHGFIGSILGFSIAFRTNAAYDRYYEGRKILSIILENSRSILRDVYSFLLKAPAFPSPTSSCSSLPVPDDAAVLVISSDLRRRLNILFAFIRQSVRESLSGFSPNSDMGTVSFSNSTFYLDPSLPHLLDLLSKEEAERYAALSPRARPGAVSAEINII 275          
BLAST of NO28G01490 vs. NCBI_GenBank
Match: XP_007511540.1 (membrane protein [Bathycoccus prasinos] >CCO17661.1 membrane protein [Bathycoccus prasinos])

HSP 1 Score: 110.2 bits (274), Expect = 2.800e-20
Identity = 96/340 (28.24%), Postives = 153/340 (45.00%), Query Frame = 0
Query:  266 QHRMDRPWSFIKILFYLKGTVIMNI-WPQMLLGFL--LVASIKILHATLNI-SYQVNPRIFS--IHTILGSTLAFITVFRTNRAYDSYIEGRKLVSAI-----------VNCLRTALMDMYINDPRDERPETREM-LVELAEDFRRKSNVLFAFIRQSTRECKEGFCPASDLGDMKFDGDNFILDPTR--PRLVDLLTAEEAKLFKRMRVNARPVYMMSEMNLL---AYRIISLSKETSIRINIDNKFQEVLSSWNGMLRVVDLRIPFPYTHVVNLLTFIFVFGAPFIYTANAQDWAGDDVILLSSLLLGVAFYGLEDMARKVENPFGWDAEDHDLEGFG 583
            Q R     SF   LF    TV+  I WP +  G L  L    K+     N+ S+Q     FS   H++ G  + F   FR + +Y  Y E +K + A+           +  LR  L      D    +  T  +  VEL ++ RR SN +F FIR   RE + G     ++     D    I +  R  P L  +LT  E         ++RP  ++++   L   A +   +S+  +  +  D    + L + N + R+ + ++P+ Y H++N   F FV+ APFI+TA    W         ++L+ +AFYG  ++AR +ENPF +D + HD+E  G
Sbjct:  978 QRRRLTSMSFFTDLFAWNNTVLPGILWPTIFAGLLAGLANYTKVKQCGKNVTSHQDCAFAFSDTAHSVCGGVIGFTLCFRASISYYRYYEAKKFMGALCEGARNFACGSLAFLRPDLPGELQYDGDAYKASTAFISSVELRDELRRLSNCMFGFIRHIARETRCGVRKVGEVQSTNIDFSQLIREDPRGNPSLAVILTESEKDFMCGKLPSSRPALVVAKCQKLVEEARKRNDISERGAFDLYDD--LNDCLVACNNLERISETKMPWIYLHLLNFALFAFVYSAPFIFTAGF-GWLSP----APAMLIAIAFYGTAEVARNMENPFDYDTDGHDIEAAG 1310          
BLAST of NO28G01490 vs. NCBI_GenBank
Match: XP_003080714.2 (Bestrophin/UPF0187 [Ostreococcus tauri] >CEG01422.1 Bestrophin/UPF0187 [Ostreococcus tauri])

HSP 1 Score: 102.4 bits (254), Expect = 5.800e-18
Identity = 96/382 (25.13%), Postives = 183/382 (47.91%), Query Frame = 0
Query:  222 RRLTRHVTVSQLAEPRVPRKEQHVLSEE--KAYPIPHPYPKKLRNKQHRMDRPWSFIKILFYLKGTVIMNIWPQMLL-GFLLVAS--IKILHATLNISYQVNPRIF----SIHTILGSTLAFITVFRTNRAYDSYIEGRKLVSAIVN---CLRTALMDMYINDPRDERPETREMLVELAEDFRRKSNVLFAFIRQSTRECKEGFCPASDLGDMKFDGDNFILDPTR-PRLVDLLTAEEAKLFKRMRVNARPVYMMSEMNLLAYRIISLSKETSIRINIDNK--------FQEVLSSWNGMLRVVDLRIPFPYTHVVNLLTFIFVFGAPFIYTANAQDWAGDDVILLSSLLLGVAFYGLEDMARKVENPFGWDAEDHDLEGFG 583
            R+LT    V +     +  + +H +SE   ++  +P+ + ++  + ++ +     ++  +F L+GTVI  +  Q++L G + +A+  +KI      +S  V    F    S H + G+ + F  +FR   +Y  Y +G+  +  +VN   CL   +  M  +   +  P   + + E A + RR SNVL  F+RQ+ RE + G  P+S L       D +I D +  P L  LL+ +E  ++ +    AR       + + A +IIS+  E     +I ++         +  +S+     R++   +PF + H++N + F+FV  APF++  + + W       L S+L+  + +G+ ++   +++PFGW    HDL   G
Sbjct:  686 RQLTPSSKVKKPIRTLILERFKHAISERSLRSRLLPNEFDREAASVKNILAMRIGWLTNVFILQGTVIPGLSVQIILAGAIALAANGLKIRECGNTVS-NVTQCAFTFDSSAHVMSGAIIGFTLIFRLALSYTRYYDGKGALGLMVNSIRCLNVGVSTMLRSSRINATPNVLKEVDEDAAEIRRLSNVLMGFMRQAIRERRHGVDPSS-LTKKAPTTDEYIEDMSGWPSLSLLLSDKEKDVYAKADYRAR-------IGICASKIISIIDERRRLKHISDRSAYEMLGHVENCISACATAERLLASSMPFAFLHLMNFVLFVFVMTAPFVFVTSYK-WLAP----LPSMLVAASLFGIAEVGSLLDDPFGWSEPKHDLTKAG 1053          
BLAST of NO28G01490 vs. NCBI_GenBank
Match: OUS46902.1 (Bestrophin, RFP-TM, chloride channel-domain-containing protein [Ostreococcus tauri])

HSP 1 Score: 102.4 bits (254), Expect = 5.800e-18
Identity = 96/382 (25.13%), Postives = 183/382 (47.91%), Query Frame = 0
Query:  222 RRLTRHVTVSQLAEPRVPRKEQHVLSEE--KAYPIPHPYPKKLRNKQHRMDRPWSFIKILFYLKGTVIMNIWPQMLL-GFLLVAS--IKILHATLNISYQVNPRIF----SIHTILGSTLAFITVFRTNRAYDSYIEGRKLVSAIVN---CLRTALMDMYINDPRDERPETREMLVELAEDFRRKSNVLFAFIRQSTRECKEGFCPASDLGDMKFDGDNFILDPTR-PRLVDLLTAEEAKLFKRMRVNARPVYMMSEMNLLAYRIISLSKETSIRINIDNK--------FQEVLSSWNGMLRVVDLRIPFPYTHVVNLLTFIFVFGAPFIYTANAQDWAGDDVILLSSLLLGVAFYGLEDMARKVENPFGWDAEDHDLEGFG 583
            R+LT    V +     +  + +H +SE   ++  +P+ + ++  + ++ +     ++  +F L+GTVI  +  Q++L G + +A+  +KI      +S  V    F    S H + G+ + F  +FR   +Y  Y +G+  +  +VN   CL   +  M  +   +  P   + + E A + RR SNVL  F+RQ+ RE + G  P+S L       D +I D +  P L  LL+ +E  ++ +    AR       + + A +IIS+  E     +I ++         +  +S+     R++   +PF + H++N + F+FV  APF++  + + W       L S+L+  + +G+ ++   +++PFGW    HDL   G
Sbjct:  739 RQLTPSSKVKKPIRTLILERFKHAISERSLRSRLLPNEFDREAASVKNILAMRIGWLTNVFILQGTVIPGLSVQIILAGAIALAANGLKIRECGNTVS-NVTQCAFTFDSSAHVMSGAIIGFTLIFRLALSYTRYYDGKGALGLMVNSIRCLNVGVSTMLRSSRINATPSVLKEVDEDAAEIRRLSNVLMGFMRQAIRERRHGVDPSS-LTKKAPTTDEYIEDMSGWPSLSLLLSDKEKDVYAKADYRAR-------IGICASKIISIIDERRRLKHISDRSAYEMLGHVENCISACATAERLLASSMPFAFLHLMNFVLFVFVMTAPFVFVTSYK-WLAP----LPSMLVAASLFGIAEVGSLLDDPFGWSEPKHDLTKAG 1106          
BLAST of NO28G01490 vs. NCBI_GenBank
Match: WP_071722765.1 (MULTISPECIES: hypothetical protein [Bacillus] >OJE40956.1 hypothetical protein BAQ47_10025 [Bacillus sp. N24])

HSP 1 Score: 91.7 bits (226), Expect = 1.000e-14
Identity = 86/315 (27.30%), Postives = 148/315 (46.98%), Query Frame = 0
Query:  279 LFYLKGTVIMNIWPQMLLGFLLVASIKILH---ATLNISYQVNPRIFSIHTILGSTLAFITVFRTNRAYDSYIEGRKLVSAIVNCLRTALMDMYINDPRDERPETREMLVELAEDFRRKSNVLFAFIRQSTRECKEGFCPASDLGDMKFDGDNFILDPTRPRLVDLLTAEEAKLFKRMRVNARPVYMMSEMNLLAYRIISLSKET-----SIRINIDNKFQEVLSSWNGMLRVVDLRIPFPYTHVVNLLTFIFVFGAPFIYTANAQDWAGDDVILLSSLLLGVAFYGLEDMARKVENPFGWDAEDHDLEGFGIGL 586
            +F LKGTVI +I+PQ+LL   +   I ++H   AT+ ++    P I     I+G +L  + VFRTN AYD Y EGRKL   I  C R   +        + +   +E L  L        ++L AF + +    ++      DL ++K              L+++ T +E ++ +      + +++   + L+   I+S   +T     +  IN++     +L++  G  R+    IPF Y   + +L  IF    P I   ++  W    V +L+++ +  AF G+E +  ++E+PFG D  D  LEG  IG+
Sbjct:   13 IFTLKGTVIRDIFPQILLYICVSTVITVIHYYYATIKMNQ--TPWI-----IVGGSLGLLLVFRTNTAYDRYWEGRKLFGTIGACSRNLAVSFLCYWDSEGKKTDQEQLKFL--------HLLIAFPKIAKGHLRD----EKDLSEIK-------------ELLNVCTEKEKEMLE------QSMHLPISIVLMLKTILSKGLKTGRIHPNAIINMEADLNNLLTAVGGCDRIKTTPIPFAYFAHIKILLLIFCGTLP-IGLVDSLGW----VTVLATMFISFAFIGIEAIGVEIEDPFGQDPNDLPLEGICIGV 284          
The following BLAST results are available for this feature:
BLAST of NO28G01490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20641.13.800e-7855.14Bestrophin/UPF0187 [Nannochloropsis gaditana][more]
EWM20646.13.500e-6364.82Bestrophin/UPF0187, partial [Nannochloropsis gadit... [more]
XP_002501798.14.200e-3233.44membrane protein [Micromonas commoda] >ACO63056.1 ... [more]
XP_003058502.11.600e-2831.38membrane protein [Micromonas pusilla CCMP1545] >EE... [more]
XP_009033392.11.700e-2528.70hypothetical protein AURANDRAFT_61213 [Aureococcus... [more]
XP_005856043.11.900e-2134.31membrane protein, partial [Nannochloropsis gaditan... [more]
XP_007511540.12.800e-2028.24membrane protein [Bathycoccus prasinos] >CCO17661.... [more]
XP_003080714.25.800e-1825.13Bestrophin/UPF0187 [Ostreococcus tauri] >CEG01422.... [more]
OUS46902.15.800e-1825.13Bestrophin, RFP-TM, chloride channel-domain-contai... [more]
WP_071722765.11.000e-1427.30MULTISPECIES: hypothetical protein [Bacillus] >OJE... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR065ncniR065Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609477gene_9881Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01490.3NO28G01490.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01490.2NO28G01490.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO28G01490.1NO28G01490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01490.3NO28G01490.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01490.2NO28G01490.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO28G01490.1NO28G01490.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01490 ID=NO28G01490|Name=NO28G01490|organism=Nannochloropsis oceanica|type=gene|length=4312bp
ATGTCCTGTGTCTCCAAAAGTCCGGACCCCAACCATACCATCCACTTCAC
ACCCACCGTTCCCACCATACAGATGAATGATTCGTCTTCCTTATCCCAAC
CCGAGGGAATTGCTGGACTTGTGAGTGGCAGCAGCAGCAGCAGCAGAAAC
ACCACCAGCAGCAACACGACCAATGACAGCAGCAGCTTTGGCCCGTCCGT
CCCCAGCACTATCTTTCCCCCGCCATCTACCCTTCATCCAGCCATAACTA
TCCAAGCCATACCTGCTTCCGGGAAGGATGACCCACTGACCCCCTTCTGC
GGCGGCGCATGGAGCCGTCCTAGCAGCGCTTGTGGCAGCAGCAGCGGCAG
CAGCAGCAGCAGCAGCAGCAGCTGTAACGCGAAGCAGCAGCAGCAGCAGC
AGCAGCAGCAACAGCAACAGCAACAACAGCAACAGCAACAGCAACAGCAA
CAACTAAAACAACTAAAACAACAGCAGCAACAGCAACAACAGCAACAACA
ACAACAGCAACAACAGCAACAGCAACAACAGCAACAGCAACAGCAACAGA
AGGTGGAGCAGCAGAACCATAGTTGGTCGCCCATGCATCAGCCGTATCAG
CAAAACCAACAGCGCGCGCGAAGCACCACGGAAGAATCCCTCTCCTCGAC
GGGGAAAGCACGACGACGACTCACCCGCCACGTAACCGTTAGTCAGCTGG
CCGAGCCAAGGGTACCACGTAAGGAGCAACACGTCTTAAGCGAGGAGAAA
GCTTACCCTATTCCCCACCCTTATCCCAAAAAGCTCAGGAATAAGCAGCA
TCGgtacaattaagggagggcgggagggagggaacaaaggggggggggag
ggcagagttgaagtggacagggtacgtgtgtgcatcttcccttcatactc
gcacctccctccctccctccctccctccctccctccctggtagCATGGAC
CGCCCATGGTCGTTCATCAAGATCTTGTTCTACTTGAAGGGCACCGTCAT
CATGAACATCTGGCCCCAGgtacgccctccctccctccctccctccctcc
ctccctccctccctccctccctccctccttccctccctgcctctttgcca
ccatttccctctctccttacctcctgctttgttctatacccatcagcgag
acagagagacaccgacatcaccatccttccagtactcccgcactaaaccc
acattgtactcctcctcccttccttctctccttccctccctctagATGCT
CCTGGGCTTCCTCCTGGTCGCCAGTATTAAAATTTTGCACGCCACGCTTA
ACATCTCGTACCAGGTCAACCCGCGCATATTCTCCATCCACACCATCCTC
GGGTCCACCCTGGCCTTTATCACAGTCTTTCGAACCAACAGgtgagggag
ggagggagggagggagggagggagggagagagggagagagaggggccttt
ctttgggatgaaacgtattgacttttcctccctccctccctccctccagG
GCCTACGACTCCTACATTGAAGGCCGGAAGCTCGTCTCCGCCATCGTAAA
TTGTCTCCGCACGGCCCTCATGGACATGTACATCAATGACCCACGgtatg
tcctcccctccctccctccctccttccctccctcccttccttcctttcct
tcatgtatagcaattacccacgagacggtcctgcatcgatccctccctcc
ctccctccgtcccttcctccttccctttcttctttccctccctctctttc
tttcctctcttcctctaaccttcaatcatcgccccccctccctccctccc
tccctccctccctccctcagCGACGAGAGGCCCGAAACGCGCGAGATGCT
GGTGGAGCTGGCCGAGGACTTCCGACGGAAAAGCAACGTCCTCTTTGCTT
TCATCCGgtaggggggggggggagggagggagggagggaagcaaagaagg
aaagaggtggattttgcattcacaaacactatacagacgctggttttcaa
accctcattccttccctccctccccctccctctcagGCAAAGCACCCGCG
AGTGCAAGGAAGGCTTTTGTCCAGCGTCTGATCTAGGAGACATGAAgtac
gtcctccctccctccctccctcctccctcttttccttccttgtcgtttac
ctgccttcaacctactgtcactttggttaaccctccctccctctctcccc
tcccttcctccctcccctcccctcccctccctccttaggcttgatggtac
ggcctcctttttctcacccactattccctccctccctccctccctccctc
cctccctccctccctccctccctttctagATTCGATGGAGATAACTTCAT
TCTGGACCCCACGCGGCCACGCCTGGTGGATTTGCTCACGGCGGAAGAGG
CAAAACTGTTCAAACGCATgtgagaagagagggaaggagggagggaagga
gggagggaaggagggagggagggagggagggagggagggagggagggagg
gagggaaggagtgagggaggggtggtatattcattgtccgggtagtgtta
tcaggtaagaagatgcatggctcaatcgcctctcgtctcttcctcccttc
tccctccctccctccgtccctccttccctcccaagGCGCGTGAATGCCCG
TCCTGTCTACATGATGAGTGAGATGAATTTATTGGCGTATCGAATCATCA
GCCTTTCCAAAGAAACCTCCATCCGGATCAATATTGgtaagcccgcttgc
cctccctccctctctccctctctccctcccttcctctgttcatatatatt
ttttatttaaaagaaaaaaaaaccggtcgtccgagccaatagggagaggc
ccttcttccagccttccctccctttacctccctctctctttcttgcgttc
ctgccattgctcacctttctcctcttcctccctcccccaccctccctccc
tcagACAACAAGTTCCAAGAAGTCCTCTCCAGCTGGAATGGGATGCTACG
Ggtaggcaaagagggagggagggagggagggagaagggacttgtaaagca
caaagcaagggaattaaaaaaagccgatcccgtccgcggcacgctctcat
tcctccctccctccctccctccctccctcctcatcttcgtcatatcccag
GTGGTCGATCTCCGCATCCCTTTCCCTTACACCCACGTCGTGAACCTCTT
GACGTTCATTTTTGTCTTTGGGGCCCCCTTTATTTACACTGCCAACGCTC
AGGATTGGGCGGGAGACGACGTCATCCTCCTCTCTTCCTTGCTCCTCGGC
GTTGCCTTTTACGGCCTGGAAGACATGGCGCGCAAGGTCCGTGTCTTCCT
CCCTCCCTCCCTACCTCCTTCCCTCCTTCCCTCCTTCCTTCCTTCCCTCA
CTTTAGTCTGTGACTGCATAGTCTGACAATCTTTTATGCACATTTGACTG
CCATTCCCCCTTCTCAGTCTCTCCCTCTCTCTTTCACTCACTCACTTTCT
TGCGCTGATTCTCGCTCTCTCCTTCCTCAGGTCGAAAACCCCTTCGGCTG
GGACGCAGAAGATCACGACTTGGAGGGCTTTGGGATCGGGCTCAATTTAG
GTAAAGCAAGAAGAACAGAAATTACGAAATCAAGGGGATGGTTAAAGAAG
GTGCGGGAAAACTGTTACGCTGTATCCCAGCGGGCGACACGTTATCACCA
GCCTTTTCCACCATGTCCGTGCACCTCTTTGTCTCTGCGTTCACGTTTCT
ACAAACGTCACAGACATCTGCTACACACCCTGATCCCAAACATCTCTCCT
CCATCTTCCTTCCTTCCTCCCTCCTTCCCTCCCACAGACGGCCAAGAAAT
CGCGAAGATGTGCGGGGTCGTGGAGCCCATGGAGTTTATGCCGCACGCCG
AACTATTTGACGACCTGACCGAGAAATACCAAGTGATTTCCTACAAAGAA
TACAGGCACACGGCGAGCGTCGTGATGGAGAGAGAGGACTCGTTTCATGA
ATCGTAGGTAACTGTCTTTGTGTGGTGGATTGGAATCCGAAAAACGACAG
AGAATCTGTGTTGTAGAGCATGGCACATATGGAATGTTCTTCTCAGGTGT
GTCGTTTGCGTCCTTTGTTTGGACACCGCAGCAAACGCTCTTGACGATTC
AGCCGGATACGTTCTCATCAATGGGTGATTTTCTGTAGGGAGTACGTGCA
CTCTGACACTCGGCATGTCTCAGTAGCGAAACTCCTTGTTTCTACTTGAC
TGACTGGAATAGGTAAGAGGGAAAAAAGTAAAAATTAAAAAAACTTCTGG
CACGACCCGTGC
back to top

protein sequence of NO28G01490.3

>NO28G01490.3-protein ID=NO28G01490.3-protein|Name=NO28G01490.3|organism=Nannochloropsis oceanica|type=polypeptide|length=594bp
MSCVSKSPDPNHTIHFTPTVPTIQMNDSSSLSQPEGIAGLVSGSSSSSRN
TTSSNTTNDSSSFGPSVPSTIFPPPSTLHPAITIQAIPASGKDDPLTPFC
GGAWSRPSSACGSSSGSSSSSSSSCNAKQQQQQQQQQQQQQQQQQQQQQQ
QLKQLKQQQQQQQQQQQQQQQQQQQQQQQQQQQKVEQQNHSWSPMHQPYQ
QNQQRARSTTEESLSSTGKARRRLTRHVTVSQLAEPRVPRKEQHVLSEEK
AYPIPHPYPKKLRNKQHRMDRPWSFIKILFYLKGTVIMNIWPQMLLGFLL
VASIKILHATLNISYQVNPRIFSIHTILGSTLAFITVFRTNRAYDSYIEG
RKLVSAIVNCLRTALMDMYINDPRDERPETREMLVELAEDFRRKSNVLFA
FIRQSTRECKEGFCPASDLGDMKFDGDNFILDPTRPRLVDLLTAEEAKLF
KRMRVNARPVYMMSEMNLLAYRIISLSKETSIRINIDNKFQEVLSSWNGM
LRVVDLRIPFPYTHVVNLLTFIFVFGAPFIYTANAQDWAGDDVILLSSLL
LGVAFYGLEDMARKVRVFLPPSLPPSLLPSFLPSLTLVCDCIV*
back to top

protein sequence of NO28G01490.2

>NO28G01490.2-protein ID=NO28G01490.2-protein|Name=NO28G01490.2|organism=Nannochloropsis oceanica|type=polypeptide|length=723bp
MSCVSKSPDPNHTIHFTPTVPTIQMNDSSSLSQPEGIAGLVSGSSSSSRN
TTSSNTTNDSSSFGPSVPSTIFPPPSTLHPAITIQAIPASGKDDPLTPFC
GGAWSRPSSACGSSSGSSSSSSSSCNAKQQQQQQQQQQQQQQQQQQQQQQ
QLKQLKQQQQQQQQQQQQQQQQQQQQQQQQQQQKVEQQNHSWSPMHQPYQ
QNQQRARSTTEESLSSTGKARRRLTRHVTVSQLAEPRVPRKEQHVLSEEK
AYPIPHPYPKKLRNKQHRMDRPWSFIKILFYLKGTVIMNIWPQMLLGFLL
VASIKILHATLNISYQVNPRIFSIHTILGSTLAFITVFRTNRAYDSYIEG
RKLVSAIVNCLRTALMDMYINDPRDERPETREMLVELAEDFRRKSNVLFA
FIRQSTRECKEGFCPASDLGDMKFDGDNFILDPTRPRLVDLLTAEEAKLF
KRMRVNARPVYMMSEMNLLAYRIISLSKETSIRINIDNKFQEVLSSWNGM
LRVVDLRIPFPYTHVVNLLTFIFVFGAPFIYTANAQDWAGDDVILLSSLL
LGVAFYGLEDMARKVENPFGWDAEDHDLEGFGIGLNLGKARRTEITKSRG
WLKKVRENCYAVSQRATRYHQPFPPCPCTSLSLRSRFYKRHRHLLHTLIP
NISPPSSFLPPSFPPTDGQEIAKMCGVVEPMEFMPHAELFDDLTEKYQVI
SYKEYRHTASVVMEREDSFHES*
back to top

protein sequence of NO28G01490.1

>NO28G01490.1-protein ID=NO28G01490.1-protein|Name=NO28G01490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=644bp
MSCVSKSPDPNHTIHFTPTVPTIQMNDSSSLSQPEGIAGLVSGSSSSSRN
TTSSNTTNDSSSFGPSVPSTIFPPPSTLHPAITIQAIPASGKDDPLTPFC
GGAWSRPSSACGSSSGSSSSSSSSCNAKQQQQQQQQQQQQQQQQQQQQQQ
QLKQLKQQQQQQQQQQQQQQQQQQQQQQQQQQQKVEQQNHSWSPMHQPYQ
QNQQRARSTTEESLSSTGKARRRLTRHVTVSQLAEPRVPRKEQHVLSEEK
AYPIPHPYPKKLRNKQHRMDRPWSFIKILFYLKGTVIMNIWPQMLLGFLL
VASIKILHATLNISYQVNPRIFSIHTILGSTLAFITVFRTNRAYDSYIEG
RKLVSAIVNCLRTALMDMYINDPRDERPETREMLVELAEDFRRKSNVLFA
FIRQSTRECKEGFCPASDLGDMKFDGDNFILDPTRPRLVDLLTAEEAKLF
KRMRVNARPVYMMSEMNLLAYRIISLSKETSIRINIDNKFQEVLSSWNGM
LRVVDLRIPFPYTHVVNLLTFIFVFGAPFIYTANAQDWAGDDVILLSSLL
LGVAFYGLEDMARKVENPFGWDAEDHDLEGFGIGLNLDGQEIAKMCGVVE
PMEFMPHAELFDDLTEKYQVISYKEYRHTASVVMEREDSFHES*
back to top
Synonyms
Publications