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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr28 | genome | chr28:471085..475396 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G01490.2 vs.
Match: EWM20641.1 (Bestrophin/UPF0187 [Nannochloropsis gaditana]) HSP 1 Score: 268.1 bits (684), Expect = 8.000e-68 Identity = 128/165 (77.58%), Postives = 147/165 (89.09%), Query Frame = 0
Query: 423 KFDGDNFILDPTRPRLVDLLTAEEAKLFKRMRVNARPVYMMSEMNLLAYRIISLSKETSIRINIDNKFQEVLSSWNGMLRVVDLRIPFPYTHVVNLLTFIFVFGAPFIYTANAQDWAGDDVILLSSLLLGVAFYGLEDMARKVENPFGWDAEDHDLEGFGIGLNL 588
KF+ D F+LDPTRPRLVDLLT EE + F+RM VN+RPVY+++EMNLLAYRI+ LSKETSIRINIDNKFQEVL+ WNGMLRV +LRIPFPYTHVVNLLTFIFVFGAPFIYT+ Q+WA +DV+L +SLLLGVAFYGLEDMARK ++P GWD EDHDLE FG+ LNL
Sbjct: 6 KFNKDTFVLDPTRPRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLAYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRLNL 170
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G01490.2 ID=NO28G01490.2|Name=NO28G01490.2|organism=Nannochloropsis oceanica|type=mRNA|length=2474bp ATGTCCTGTGTCTCCAAAAGTCCGGACCCCAACCATACCATCCACTTCAC ACCCACCGTTCCCACCATACAGATGAATGATTCGTCTTCCTTATCCCAAC CCGAGGGAATTGCTGGACTTGTGAGTGGCAGCAGCAGCAGCAGCAGAAAC ACCACCAGCAGCAACACGACCAATGACAGCAGCAGCTTTGGCCCGTCCGT CCCCAGCACTATCTTTCCCCCGCCATCTACCCTTCATCCAGCCATAACTA TCCAAGCCATACCTGCTTCCGGGAAGGATGACCCACTGACCCCCTTCTGC GGCGGCGCATGGAGCCGTCCTAGCAGCGCTTGTGGCAGCAGCAGCGGCAG CAGCAGCAGCAGCAGCAGCAGCTGTAACGCGAAGCAGCAGCAGCAGCAGC AGCAGCAGCAACAGCAACAGCAACAACAGCAACAGCAACAGCAACAGCAA CAACTAAAACAACTAAAACAACAGCAGCAACAGCAACAACAGCAACAACA ACAACAGCAACAACAGCAACAGCAACAACAGCAACAGCAACAGCAACAGA AGGTGGAGCAGCAGAACCATAGTTGGTCGCCCATGCATCAGCCGTATCAG CAAAACCAACAGCGCGCGCGAAGCACCACGGAAGAATCCCTCTCCTCGAC GGGGAAAGCACGACGACGACTCACCCGCCACGTAACCGTTAGTCAGCTGG CCGAGCCAAGGGTACCACGTAAGGAGCAACACGTCTTAAGCGAGGAGAAA GCTTACCCTATTCCCCACCCTTATCCCAAAAAGCTCAGGAATAAGCAGCA TCGCATGGACCGCCCATGGTCGTTCATCAAGATCTTGTTCTACTTGAAGG GCACCGTCATCATGAACATCTGGCCCCAGATGCTCCTGGGCTTCCTCCTG GTCGCCAGTATTAAAATTTTGCACGCCACGCTTAACATCTCGTACCAGGT CAACCCGCGCATATTCTCCATCCACACCATCCTCGGGTCCACCCTGGCCT TTATCACAGTCTTTCGAACCAACAGGGCCTACGACTCCTACATTGAAGGC CGGAAGCTCGTCTCCGCCATCGTAAATTGTCTCCGCACGGCCCTCATGGA CATGTACATCAATGACCCACGCGACGAGAGGCCCGAAACGCGCGAGATGC TGGTGGAGCTGGCCGAGGACTTCCGACGGAAAAGCAACGTCCTCTTTGCT TTCATCCGGCAAAGCACCCGCGAGTGCAAGGAAGGCTTTTGTCCAGCGTC TGATCTAGGAGACATGAAATTCGATGGAGATAACTTCATTCTGGACCCCA CGCGGCCACGCCTGGTGGATTTGCTCACGGCGGAAGAGGCAAAACTGTTC AAACGCATGCGCGTGAATGCCCGTCCTGTCTACATGATGAGTGAGATGAA TTTATTGGCGTATCGAATCATCAGCCTTTCCAAAGAAACCTCCATCCGGA TCAATATTGACAACAAGTTCCAAGAAGTCCTCTCCAGCTGGAATGGGATG CTACGGGTGGTCGATCTCCGCATCCCTTTCCCTTACACCCACGTCGTGAA CCTCTTGACGTTCATTTTTGTCTTTGGGGCCCCCTTTATTTACACTGCCA ACGCTCAGGATTGGGCGGGAGACGACGTCATCCTCCTCTCTTCCTTGCTC CTCGGCGTTGCCTTTTACGGCCTGGAAGACATGGCGCGCAAGGTCGAAAA CCCCTTCGGCTGGGACGCAGAAGATCACGACTTGGAGGGCTTTGGGATCG GGCTCAATTTAGGTAAAGCAAGAAGAACAGAAATTACGAAATCAAGGGGA TGGTTAAAGAAGGTGCGGGAAAACTGTTACGCTGTATCCCAGCGGGCGAC ACGTTATCACCAGCCTTTTCCACCATGTCCGTGCACCTCTTTGTCTCTGC GTTCACGTTTCTACAAACGTCACAGACATCTGCTACACACCCTGATCCCA AACATCTCTCCTCCATCTTCCTTCCTTCCTCCCTCCTTCCCTCCCACAGA CGGCCAAGAAATCGCGAAGATGTGCGGGGTCGTGGAGCCCATGGAGTTTA TGCCGCACGCCGAACTATTTGACGACCTGACCGAGAAATACCAAGTGATT TCCTACAAAGAATACAGGCACACGGCGAGCGTCGTGATGGAGAGAGAGGA CTCGTTTCATGAATCGTAGGTAACTGTCTTTGTGTGGTGGATTGGAATCC GAAAAACGACAGAGAATCTGTGTTGTAGAGCATGGCACATATGGAATGTT CTTCTCAGGTGTGTCGTTTGCGTCCTTTGTTTGGACACCGCAGCAAACGC TCTTGACGATTCAGCCGGATACGTTCTCATCAATGGGTGATTTTCTGTAG GGAGTACGTGCACTCTGACACTCGGCATGTCTCAGTAGCGAAACTCCTTG TTTCTACTTGACTGACTGGAATAGGTAAGAGGGAAAAAAGTAAAAATTAA AAAAACTTCTGGCACGACCCGTGC back to topprotein sequence of NO28G01490.2 >NO28G01490.2-protein ID=NO28G01490.2-protein|Name=NO28G01490.2|organism=Nannochloropsis oceanica|type=polypeptide|length=723bp MSCVSKSPDPNHTIHFTPTVPTIQMNDSSSLSQPEGIAGLVSGSSSSSRN TTSSNTTNDSSSFGPSVPSTIFPPPSTLHPAITIQAIPASGKDDPLTPFC GGAWSRPSSACGSSSGSSSSSSSSCNAKQQQQQQQQQQQQQQQQQQQQQQ QLKQLKQQQQQQQQQQQQQQQQQQQQQQQQQQQKVEQQNHSWSPMHQPYQ QNQQRARSTTEESLSSTGKARRRLTRHVTVSQLAEPRVPRKEQHVLSEEK AYPIPHPYPKKLRNKQHRMDRPWSFIKILFYLKGTVIMNIWPQMLLGFLL VASIKILHATLNISYQVNPRIFSIHTILGSTLAFITVFRTNRAYDSYIEG RKLVSAIVNCLRTALMDMYINDPRDERPETREMLVELAEDFRRKSNVLFA FIRQSTRECKEGFCPASDLGDMKFDGDNFILDPTRPRLVDLLTAEEAKLF KRMRVNARPVYMMSEMNLLAYRIISLSKETSIRINIDNKFQEVLSSWNGM LRVVDLRIPFPYTHVVNLLTFIFVFGAPFIYTANAQDWAGDDVILLSSLL LGVAFYGLEDMARKVENPFGWDAEDHDLEGFGIGLNLGKARRTEITKSRG WLKKVRENCYAVSQRATRYHQPFPPCPCTSLSLRSRFYKRHRHLLHTLIP NISPPSSFLPPSFPPTDGQEIAKMCGVVEPMEFMPHAELFDDLTEKYQVI SYKEYRHTASVVMEREDSFHES* back to topmRNA from alignment at chr28:471085..475396- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G01490.2 ID=NO28G01490.2|Name=NO28G01490.2|organism=Nannochloropsis oceanica|type=mRNA|length=4312bp|location=Sequence derived from alignment at chr28:471085..475396- (Nannochloropsis oceanica) ATGTCCTGTGTCTCCAAAAGTCCGGACCCCAACCATACCATCCACTTCAC
ACCCACCGTTCCCACCATACAGATGAATGATTCGTCTTCCTTATCCCAAC
CCGAGGGAATTGCTGGACTTGTGAGTGGCAGCAGCAGCAGCAGCAGAAAC
ACCACCAGCAGCAACACGACCAATGACAGCAGCAGCTTTGGCCCGTCCGT
CCCCAGCACTATCTTTCCCCCGCCATCTACCCTTCATCCAGCCATAACTA
TCCAAGCCATACCTGCTTCCGGGAAGGATGACCCACTGACCCCCTTCTGC
GGCGGCGCATGGAGCCGTCCTAGCAGCGCTTGTGGCAGCAGCAGCGGCAG
CAGCAGCAGCAGCAGCAGCAGCTGTAACGCGAAGCAGCAGCAGCAGCAGC
AGCAGCAGCAACAGCAACAGCAACAACAGCAACAGCAACAGCAACAGCAA
CAACTAAAACAACTAAAACAACAGCAGCAACAGCAACAACAGCAACAACA
ACAACAGCAACAACAGCAACAGCAACAACAGCAACAGCAACAGCAACAGA
AGGTGGAGCAGCAGAACCATAGTTGGTCGCCCATGCATCAGCCGTATCAG
CAAAACCAACAGCGCGCGCGAAGCACCACGGAAGAATCCCTCTCCTCGAC
GGGGAAAGCACGACGACGACTCACCCGCCACGTAACCGTTAGTCAGCTGG
CCGAGCCAAGGGTACCACGTAAGGAGCAACACGTCTTAAGCGAGGAGAAA
GCTTACCCTATTCCCCACCCTTATCCCAAAAAGCTCAGGAATAAGCAGCA
TCGGTACAATTAAGGGAGGGCGGGAGGGAGGGAACAAAGGGGGGGGGGAG
GGCAGAGTTGAAGTGGACAGGGTACGTGTGTGCATCTTCCCTTCATACTC
GCACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGGTAGCATGGAC
CGCCCATGGTCGTTCATCAAGATCTTGTTCTACTTGAAGGGCACCGTCAT
CATGAACATCTGGCCCCAGGTACGCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTGCCTCTTTGCCA
CCATTTCCCTCTCTCCTTACCTCCTGCTTTGTTCTATACCCATCAGCGAG
ACAGAGAGACACCGACATCACCATCCTTCCAGTACTCCCGCACTAAACCC
ACATTGTACTCCTCCTCCCTTCCTTCTCTCCTTCCCTCCCTCTAGATGCT
CCTGGGCTTCCTCCTGGTCGCCAGTATTAAAATTTTGCACGCCACGCTTA
ACATCTCGTACCAGGTCAACCCGCGCATATTCTCCATCCACACCATCCTC
GGGTCCACCCTGGCCTTTATCACAGTCTTTCGAACCAACAGGTGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGAGAGAGGGGCCTTT
CTTTGGGATGAAACGTATTGACTTTTCCTCCCTCCCTCCCTCCCTCCAGG
GCCTACGACTCCTACATTGAAGGCCGGAAGCTCGTCTCCGCCATCGTAAA
TTGTCTCCGCACGGCCCTCATGGACATGTACATCAATGACCCACGGTATG
TCCTCCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTTCCTTCCTTTCCT
TCATGTATAGCAATTACCCACGAGACGGTCCTGCATCGATCCCTCCCTCC
CTCCCTCCGTCCCTTCCTCCTTCCCTTTCTTCTTTCCCTCCCTCTCTTTC
TTTCCTCTCTTCCTCTAACCTTCAATCATCGCCCCCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCAGCGACGAGAGGCCCGAAACGCGCGAGATGCT
GGTGGAGCTGGCCGAGGACTTCCGACGGAAAAGCAACGTCCTCTTTGCTT
TCATCCGGTAGGGGGGGGGGGGAGGGAGGGAGGGAGGGAAGCAAAGAAGG
AAAGAGGTGGATTTTGCATTCACAAACACTATACAGACGCTGGTTTTCAA
ACCCTCATTCCTTCCCTCCCTCCCCCTCCCTCTCAGGCAAAGCACCCGCG
AGTGCAAGGAAGGCTTTTGTCCAGCGTCTGATCTAGGAGACATGAAGTAC
GTCCTCCCTCCCTCCCTCCCTCCTCCCTCTTTTCCTTCCTTGTCGTTTAC
CTGCCTTCAACCTACTGTCACTTTGGTTAACCCTCCCTCCCTCTCTCCCC
TCCCTTCCTCCCTCCCCTCCCCTCCCCTCCCTCCTTAGGCTTGATGGTAC
GGCCTCCTTTTTCTCACCCACTATTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTTTCTAGATTCGATGGAGATAACTTCAT
TCTGGACCCCACGCGGCCACGCCTGGTGGATTTGCTCACGGCGGAAGAGG
CAAAACTGTTCAAACGCATGTGAGAAGAGAGGGAAGGAGGGAGGGAAGGA
GGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAAGGAGTGAGGGAGGGGTGGTATATTCATTGTCCGGGTAGTGTTA
TCAGGTAAGAAGATGCATGGCTCAATCGCCTCTCGTCTCTTCCTCCCTTC
TCCCTCCCTCCCTCCGTCCCTCCTTCCCTCCCAAGGCGCGTGAATGCCCG
TCCTGTCTACATGATGAGTGAGATGAATTTATTGGCGTATCGAATCATCA
GCCTTTCCAAAGAAACCTCCATCCGGATCAATATTGGTAAGCCCGCTTGC
CCTCCCTCCCTCTCTCCCTCTCTCCCTCCCTTCCTCTGTTCATATATATT
TTTTATTTAAAAGAAAAAAAAACCGGTCGTCCGAGCCAATAGGGAGAGGC
CCTTCTTCCAGCCTTCCCTCCCTTTACCTCCCTCTCTCTTTCTTGCGTTC
CTGCCATTGCTCACCTTTCTCCTCTTCCTCCCTCCCCCACCCTCCCTCCC
TCAGACAACAAGTTCCAAGAAGTCCTCTCCAGCTGGAATGGGATGCTACG
GGTAGGCAAAGAGGGAGGGAGGGAGGGAGGGAGAAGGGACTTGTAAAGCA
CAAAGCAAGGGAATTAAAAAAAGCCGATCCCGTCCGCGGCACGCTCTCAT
TCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCATCTTCGTCATATCCCAG
GTGGTCGATCTCCGCATCCCTTTCCCTTACACCCACGTCGTGAACCTCTT
GACGTTCATTTTTGTCTTTGGGGCCCCCTTTATTTACACTGCCAACGCTC
AGGATTGGGCGGGAGACGACGTCATCCTCCTCTCTTCCTTGCTCCTCGGC
GTTGCCTTTTACGGCCTGGAAGACATGGCGCGCAAGGTCCGTGTCTTCCT
CCCTCCCTCCCTACCTCCTTCCCTCCTTCCCTCCTTCCTTCCTTCCCTCA
CTTTAGTCTGTGACTGCATAGTCTGACAATCTTTTATGCACATTTGACTG
CCATTCCCCCTTCTCAGTCTCTCCCTCTCTCTTTCACTCACTCACTTTCT
TGCGCTGATTCTCGCTCTCTCCTTCCTCAGGTCGAAAACCCCTTCGGCTG
GGACGCAGAAGATCACGACTTGGAGGGCTTTGGGATCGGGCTCAATTTAG
GTAAAGCAAGAAGAACAGAAATTACGAAATCAAGGGGATGGTTAAAGAAG
GTGCGGGAAAACTGTTACGCTGTATCCCAGCGGGCGACACGTTATCACCA
GCCTTTTCCACCATGTCCGTGCACCTCTTTGTCTCTGCGTTCACGTTTCT
ACAAACGTCACAGACATCTGCTACACACCCTGATCCCAAACATCTCTCCT
CCATCTTCCTTCCTTCCTCCCTCCTTCCCTCCCACAGACGGCCAAGAAAT
CGCGAAGATGTGCGGGGTCGTGGAGCCCATGGAGTTTATGCCGCACGCCG
AACTATTTGACGACCTGACCGAGAAATACCAAGTGATTTCCTACAAAGAA
TACAGGCACACGGCGAGCGTCGTGATGGAGAGAGAGGACTCGTTTCATGA
ATCGTAGGTAACTGTCTTTGTGTGGTGGATTGGAATCCGAAAAACGACAG
AGAATCTGTGTTGTAGAGCATGGCACATATGGAATGTTCTTCTCAGGTGT
GTCGTTTGCGTCCTTTGTTTGGACACCGCAGCAAACGCTCTTGACGATTC
AGCCGGATACGTTCTCATCAATGGGTGATTTTCTGTAGGGAGTACGTGCA
CTCTGACACTCGGCATGTCTCAGTAGCGAAACTCCTTGTTTCTACTTGAC
TGACTGGAATAGGTAAGAGGGAAAAAAGTAAAAATTAAAAAAACTTCTGG
CACGACCCGTGC back to topCoding sequence (CDS) from alignment at chr28:471085..475396- >NO28G01490.2 ID=NO28G01490.2|Name=NO28G01490.2|organism=Nannochloropsis oceanica|type=CDS|length=2169bp|location=Sequence derived from alignment at chr28:471085..475396- (Nannochloropsis oceanica) ATGTCCTGTGTCTCCAAAAGTCCGGACCCCAACCATACCATCCACTTCAC ACCCACCGTTCCCACCATACAGATGAATGATTCGTCTTCCTTATCCCAAC CCGAGGGAATTGCTGGACTTGTGAGTGGCAGCAGCAGCAGCAGCAGAAAC ACCACCAGCAGCAACACGACCAATGACAGCAGCAGCTTTGGCCCGTCCGT CCCCAGCACTATCTTTCCCCCGCCATCTACCCTTCATCCAGCCATAACTA TCCAAGCCATACCTGCTTCCGGGAAGGATGACCCACTGACCCCCTTCTGC GGCGGCGCATGGAGCCGTCCTAGCAGCGCTTGTGGCAGCAGCAGCGGCAG CAGCAGCAGCAGCAGCAGCAGCTGTAACGCGAAGCAGCAGCAGCAGCAGC AGCAGCAGCAACAGCAACAGCAACAACAGCAACAGCAACAGCAACAGCAA CAACTAAAACAACTAAAACAACAGCAGCAACAGCAACAACAGCAACAACA ACAACAGCAACAACAGCAACAGCAACAACAGCAACAGCAACAGCAACAGA AGGTGGAGCAGCAGAACCATAGTTGGTCGCCCATGCATCAGCCGTATCAG CAAAACCAACAGCGCGCGCGAAGCACCACGGAAGAATCCCTCTCCTCGAC GGGGAAAGCACGACGACGACTCACCCGCCACGTAACCGTTAGTCAGCTGG CCGAGCCAAGGGTACCACGTAAGGAGCAACACGTCTTAAGCGAGGAGAAA GCTTACCCTATTCCCCACCCTTATCCCAAAAAGCTCAGGAATAAGCAGCA TCGCATGGACCGCCCATGGTCGTTCATCAAGATCTTGTTCTACTTGAAGG GCACCGTCATCATGAACATCTGGCCCCAGATGCTCCTGGGCTTCCTCCTG GTCGCCAGTATTAAAATTTTGCACGCCACGCTTAACATCTCGTACCAGGT CAACCCGCGCATATTCTCCATCCACACCATCCTCGGGTCCACCCTGGCCT TTATCACAGTCTTTCGAACCAACAGGGCCTACGACTCCTACATTGAAGGC CGGAAGCTCGTCTCCGCCATCGTAAATTGTCTCCGCACGGCCCTCATGGA CATGTACATCAATGACCCACGCGACGAGAGGCCCGAAACGCGCGAGATGC TGGTGGAGCTGGCCGAGGACTTCCGACGGAAAAGCAACGTCCTCTTTGCT TTCATCCGGCAAAGCACCCGCGAGTGCAAGGAAGGCTTTTGTCCAGCGTC TGATCTAGGAGACATGAAATTCGATGGAGATAACTTCATTCTGGACCCCA CGCGGCCACGCCTGGTGGATTTGCTCACGGCGGAAGAGGCAAAACTGTTC AAACGCATGCGCGTGAATGCCCGTCCTGTCTACATGATGAGTGAGATGAA TTTATTGGCGTATCGAATCATCAGCCTTTCCAAAGAAACCTCCATCCGGA TCAATATTGACAACAAGTTCCAAGAAGTCCTCTCCAGCTGGAATGGGATG CTACGGGTGGTCGATCTCCGCATCCCTTTCCCTTACACCCACGTCGTGAA CCTCTTGACGTTCATTTTTGTCTTTGGGGCCCCCTTTATTTACACTGCCA ACGCTCAGGATTGGGCGGGAGACGACGTCATCCTCCTCTCTTCCTTGCTC CTCGGCGTTGCCTTTTACGGCCTGGAAGACATGGCGCGCAAGGTCGAAAA CCCCTTCGGCTGGGACGCAGAAGATCACGACTTGGAGGGCTTTGGGATCG GGCTCAATTTAGGTAAAGCAAGAAGAACAGAAATTACGAAATCAAGGGGA TGGTTAAAGAAGGTGCGGGAAAACTGTTACGCTGTATCCCAGCGGGCGAC ACGTTATCACCAGCCTTTTCCACCATGTCCGTGCACCTCTTTGTCTCTGC GTTCACGTTTCTACAAACGTCACAGACATCTGCTACACACCCTGATCCCA AACATCTCTCCTCCATCTTCCTTCCTTCCTCCCTCCTTCCCTCCCACAGA CGGCCAAGAAATCGCGAAGATGTGCGGGGTCGTGGAGCCCATGGAGTTTA TGCCGCACGCCGAACTATTTGACGACCTGACCGAGAAATACCAAGTGATT TCCTACAAAGAATACAGGCACACGGCGAGCGTCGTGATGGAGAGAGAGGA CTCGTTTCATGAATCGTAG back to top
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