NO28G01050, NO28G01050 (gene) Nannochloropsis oceanica

Overview
NameNO28G01050
Unique NameNO28G01050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2457
Alignment locationchr28:332628..335084 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:332628..335084 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO28G01050 vs. NCBI_GenBank
Match: EWM20890.1 (hypothetical protein Naga_100201g5 [Nannochloropsis gaditana])

HSP 1 Score: 137.1 bits (344), Expect = 7.300e-29
Identity = 98/302 (32.45%), Postives = 137/302 (45.36%), Query Frame = 0 
Query:    1 MPRTKGAPKRDAHALVQVSKRSVAVEDLSDDEWIPPSTKA-------------IIGDHGGXXXXXXXXXXXXXXXXXXXXXXXXXST--------------------------LSKTIMTYKDTGETFDPESIAAQYMEAXXXXXXXMAQLGLAMHNQLLTSARLAAADSGGSAVSVDMLESPG------------KRTTMAVEYRLNKKLYMDKVPHYETQEVAAVLTAVLRRQSTKRRKATTTHPSVKVEEVAKRSPPLFWSIFWNFQADVHRGLG------AVLGMAESLMATGEEGEG 246
            MPR K  PKRDA ALVQVS+R  + E +SDDEW+PP   A              +G                             +T                           +KT + +  +G++F+ + +A +Y+         M  LG++MH QL+T ARL AA++ G AV +      G            +R T+ V    N K + D+ P Y   E+A V   VL++QSTKRRKAT  H SVK+EEVA+RSPP FWS+F +  ADV +GL        ++   ES + T  +G G
Sbjct:    1 MPRPKNTPKRDAQALVQVSERPKSEEAVSDDEWVPPPLPAKATGASQKPHKQVKMGTTASPSSLVYTEPPPGMESECSFENVKVTATKPSSATAPSGWRTALKKEKEGLIDKKKAKTTIEWGSSGDSFNADDLAVEYVMGAGDGGTGMRGLGVSMHEQLMTCARLGAAETAGRAVDIAWSNPGGAEAGVEVGKEGRRRPTLIVTMEFNGKSFRDQGPLYSMHEMARVFAGVLQKQSTKRRKATIEHSSVKLEEVARRSPPFFWSLFHHNHADVRKGLAKAKITCILVNTFESDIKTDTDGAG 302
The following BLAST results are available for this feature:
BLAST of NO28G01050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20890.17.300e-2932.45hypothetical protein Naga_100201g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004910NSK004910Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G01050.1NO28G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674147gene_9209Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100201g5gene9527Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G01050.1NO28G01050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G01050 ID=NO28G01050|Name=NO28G01050|organism=Nannochloropsis oceanica|type=gene|length=2457bp
AAAATGCATGCTAAATATTTTTGTTGGGCCAAGCAAGTTACCTCCACAAT
CCCAAAAATAAATCTCTTTTGACCCACCACCGCACGAGAACAATAGTGCG
ACACTCACTGTGATGCGTCCTGCTGCAGTGACGAGGATCATGCTTTCACT
CAGCTGAAGTCCAGTCCAGGCCATTCAACCTCCTCCCCCCATCTCCCCCC
TCACAGCCCCTGAGCAAACATGCCCCGTACGAAGGGGGCCCCGAAGCGCG
ATGCCCACGCGCTAGTGCAAGTGAGCAAACGATCCGTGGCGGTGGAGGAC
TTAAGCGACGATGAGTGGATTCCTCCCTCCACGAAAGCCATAATCGGCGA
CCATGGCGGTGTGGGGGAGGAAGAGGAGGAGAAGGTGGGAGGTGTTAAGA
AGCAGGAAAAGCCGCAGCAGCAGAAGAAGGATAAGTCCACGCTAAGCAAG
ACCATCATGACGTACAAAGACACCGGGGAGACCTTTGATCCCGAAAGCAT
CGCTGCGCAATACATGGAAGCGGCAGGTGGAGGAGGGGGAGGGATGGCAC
AGTTGGGCTTGGCCATGCACAACCAACTTCTGACGTCGGCGCGATTGGCG
GCTGCTGATAGCGGGGGAAGTGCCGTCAGTGTGGACATGCTTGAGAGTCC
TGGAAAACGGACGACGATGGCGGTGGAGTATAGGCTCAATAAGAAGTTGT
ACATGGACAAAGTGCCACACTACGAGACGCAGGAGGTGGCAGCTGTGTTG
ACGGCAGTCTTGCGGAGACAGTCTACGAAGCGACGgtaagaaggaggctg
ctctatgcattcagtcctagactcctcatctctctttgtatctctctctt
cttctggtaccaaaaactacagCAAAGCGACCACTACCCACCCCTCGGTC
AAGGTAGAAGAGGTGGCAAAGCGTAGCCCGCCCTTATTTTGGTCAATCTT
TTGGAATTTTCAAGCTGATGTGCACAGGGGTTTAGGGGCGGTACTGGGCA
TGGCTGAGTCCCTGATGGCGACAGGGGAGGAGGGGGAAGGGTAAGACGGA
CAGAGAGGACAAGGAAGAGATGGTGATGGTGTAAATGGTGGGCTATGACA
TCGATCAGAAGCTAAAGCTGTGATTGTGGCGGCGGGGGAGGAGAATGGAA
ATATGTTTTTCATAGCCGTGTACACAGGTGGAGAGACACGAGCGGGGAGG
TCAAGTGTGAGCGGAATAGGAAAGTAGAGATCGGTTGGGAGACTTTGCGA
CAGGAAAAAAAGAAAAGTAGGAATAGAAATTTACATCATGTGCGAAAAAT
ATACATCTTTACTTATTCTGGCCTCTTGGAAAAATCGAATCAAATCGTAA
AGGCAGCAAATCATCACGTTCGCAAGGCTCTCTATACGCATTTTTTTACC
TGCCTTCCATTATTTATTCTTTGTGTCCCTTCTAACATTTGTGCATCATT
TCATGGCATTTCTTTCTCCTCCTTCCCTCCGCCCTCCTCCTCCTCCTCCT
CCTTCTCCTCGATGAACGTACCCGCATCCCCCTACCCTCTTTAGCCATTT
CACAAACCGTTACCAAAAACTCACTAGAGTCAATGTTGTCGCGATTGTTA
TTGTACAGTCATTTTCTCCTGGCCGTCAAGGTCATGTCTATGCTTACTTA
CAGCTCTCCGCACTCGACCACCTCAACCTTGAGGCGCTTTACGTCTGTGT
TTTCGATCTTCCGAACGGTCAACATGGACGCCGCGTCGAGCACCTTTCCA
AAAACCACGTGCTTCCCATCCAGCCACTCGCACTTGTTGCAGGTGATGAA
AAACTGACACCCATTACTGTTGGGGCCGCTGTTGGCCATGCTCAGGAGGC
CGGGACCCGTATGCCGCAGGTCGAAGCCTTCGTCTGCAAATTTGTCGCCA
TAAATGGATTTCAAACCCGTGCCGTCGCCCTTCACAAAATCCCCGCCCTG
GACCGAGGGGGAGGGAGAGAGGGAGGGAGGGAGAGAGGGACGACGGGTTA
GACGAAAGAAAGTCCAACATTTGCGCACGTGTTCTCCTAGAAAGCTTCCA
ATGCGTGTCGTTGACCTTCATAAAATCTCCACCTGTAGTAGTAATGAACA
ACATAAATAATGAAGGAATGATAAATAAAAAAGTGAAATGAATACATATA
TGAAGTAAATGGACCGACACAGAGAAAATGATGATGAATAAAAGCCTACC
TGAATCATAAAATCCTTAATCACCCGATGAAAAGGCGACCCCTTGTAGCC
GATCGGCAAGCCACTCTCCCTATATTCCCCCGTGCAAAATTGTCGGAAAT
TCTCCACAGTCTTGGGTGCCACGTCTCTGAAAAGTTCCATCTTAATCCGG
CCTGCAGGCCGTGTAGCGATCGAAATGTCCATGAACACCACCGGGTTCCC
ACGGGAAACAGCTTCGAGTACAGCAGGGTCCGCCATGGTAGTTTTGGGAG
CGTGCCT
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protein sequence of NO28G01050.1

>NO28G01050.1-protein ID=NO28G01050.1-protein|Name=NO28G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MPRTKGAPKRDAHALVQVSKRSVAVEDLSDDEWIPPSTKAIIGDHGGVGE
EEEEKVGGVKKQEKPQQQKKDKSTLSKTIMTYKDTGETFDPESIAAQYME
AAGGGGGGMAQLGLAMHNQLLTSARLAAADSGGSAVSVDMLESPGKRTTM
AVEYRLNKKLYMDKVPHYETQEVAAVLTAVLRRQSTKRRKATTTHPSVKV
EEVAKRSPPLFWSIFWNFQADVHRGLGAVLGMAESLMATGEEGEG*
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Synonyms
Publications