|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr28 | genome | chr28:332628..335084 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G01050.1 vs.
Match: EWM20890.1 (hypothetical protein Naga_100201g5 [Nannochloropsis gaditana]) HSP 1 Score: 140.2 bits (352), Expect = 8.600e-30 Identity = 108/302 (35.76%), Postives = 148/302 (49.01%), Query Frame = 0
Query: 1 MPRTKGAPKRDAHALVQVSKRSVAVEDLSDD-----------------------EWIPPSTKAIIGDHGGVGEEEEEKVGGVK-KQEKPQQQ----------KKDKSTL-----SKTIMTYKDTGETFDPESIAAQYMEAAGGGGGGMAQLGLAMHNQLLTSARLAAADSGGSAVSVDMLESPG------------KRTTMAVEYRLNKKLYMDKVPHYETQEVAAVLTAVLRRQSTKRRKATTTHPSVKVEEVAKRSPPLFWSIFWNFQADVHRGLG------AVLGMAESLMATGEEGEG 246
MPR K PKRDA ALVQVS+R + E +SDD S +++ G E E VK KP KK+K L +KT + + +G++F+ + +A +Y+ AG GG GM LG++MH QL+T ARL AA++ G AV + G +R T+ V N K + D+ P Y E+A V VL++QSTKRRKAT H SVK+EEVA+RSPP FWS+F + ADV +GL ++ ES + T +G G
Sbjct: 1 MPRPKNTPKRDAQALVQVSERPKSEEAVSDDEWVPPPLPAKATGASQKPHKQVKMGTTASPSSLVYTEPPPGMESECSFENVKVTATKPSSATAPSGWRTALKKEKEGLIDKKKAKTTIEWGSSGDSFNADDLAVEYVMGAGDGGTGMRGLGVSMHEQLMTCARLGAAETAGRAVDIAWSNPGGAEAGVEVGKEGRRRPTLIVTMEFNGKSFRDQGPLYSMHEMARVFAGVLQKQSTKRRKATIEHSSVKLEEVARRSPPFFWSLFHHNHADVRKGLAKAKITCILVNTFESDIKTDTDGAG 302
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G01050.1 ID=NO28G01050.1|Name=NO28G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2370bp
AAAATGCATGCTAAATATTTTTGTTGGGCCAAGCAAGTTACCTCCACAAT
CCCAAAAATAAATCTCTTTTGACCCACCACCGCACGAGAACAATAGTGCG
ACACTCACTGTGATGCGTCCTGCTGCAGTGACGAGGATCATGCTTTCACT
CAGCTGAAGTCCAGTCCAGGCCATTCAACCTCCTCCCCCCATCTCCCCCC
TCACAGCCCCTGAGCAAACATGCCCCGTACGAAGGGGGCCCCGAAGCGCG
ATGCCCACGCGCTAGTGCAAGTGAGCAAACGATCCGTGGCGGTGGAGGAC
TTAAGCGACGATGAGTGGATTCCTCCCTCCACGAAAGCCATAATCGGCGA
CCATGGCGGTGTGGGGGAGGAAGAGGAGGAGAAGGTGGGAGGTGTTAAGA
AGCAGGAAAAGCCGCAGCAGCAGAAGAAGGATAAGTCCACGCTAAGCAAG
ACCATCATGACGTACAAAGACACCGGGGAGACCTTTGATCCCGAAAGCAT
CGCTGCGCAATACATGGAAGCGGCAGGTGGAGGAGGGGGAGGGATGGCAC
AGTTGGGCTTGGCCATGCACAACCAACTTCTGACGTCGGCGCGATTGGCG
GCTGCTGATAGCGGGGGAAGTGCCGTCAGTGTGGACATGCTTGAGAGTCC
TGGAAAACGGACGACGATGGCGGTGGAGTATAGGCTCAATAAGAAGTTGT
ACATGGACAAAGTGCCACACTACGAGACGCAGGAGGTGGCAGCTGTGTTG
ACGGCAGTCTTGCGGAGACAGTCTACGAAGCGACGCAAAGCGACCACTAC
CCACCCCTCGGTCAAGGTAGAAGAGGTGGCAAAGCGTAGCCCGCCCTTAT
TTTGGTCAATCTTTTGGAATTTTCAAGCTGATGTGCACAGGGGTTTAGGG
GCGGTACTGGGCATGGCTGAGTCCCTGATGGCGACAGGGGAGGAGGGGGA
AGGGTAAGACGGACAGAGAGGACAAGGAAGAGATGGTGATGGTGTAAATG
GTGGGCTATGACATCGATCAGAAGCTAAAGCTGTGATTGTGGCGGCGGGG
GAGGAGAATGGAAATATGTTTTTCATAGCCGTGTACACAGGTGGAGAGAC
ACGAGCGGGGAGGTCAAGTGTGAGCGGAATAGGAAAGTAGAGATCGGTTG
GGAGACTTTGCGACAGGAAAAAAAGAAAAGTAGGAATAGAAATTTACATC
ATGTGCGAAAAATATACATCTTTACTTATTCTGGCCTCTTGGAAAAATCG
AATCAAATCGTAAAGGCAGCAAATCATCACGTTCGCAAGGCTCTCTATAC
GCATTTTTTTACCTGCCTTCCATTATTTATTCTTTGTGTCCCTTCTAACA
TTTGTGCATCATTTCATGGCATTTCTTTCTCCTCCTTCCCTCCGCCCTCC
TCCTCCTCCTCCTCCTTCTCCTCGATGAACGTACCCGCATCCCCCTACCC
TCTTTAGCCATTTCACAAACCGTTACCAAAAACTCACTAGAGTCAATGTT
GTCGCGATTGTTATTGTACAGTCATTTTCTCCTGGCCGTCAAGGTCATGT
CTATGCTTACTTACAGCTCTCCGCACTCGACCACCTCAACCTTGAGGCGC
TTTACGTCTGTGTTTTCGATCTTCCGAACGGTCAACATGGACGCCGCGTC
GAGCACCTTTCCAAAAACCACGTGCTTCCCATCCAGCCACTCGCACTTGT
TGCAGGTGATGAAAAACTGACACCCATTACTGTTGGGGCCGCTGTTGGCC
ATGCTCAGGAGGCCGGGACCCGTATGCCGCAGGTCGAAGCCTTCGTCTGC
AAATTTGTCGCCATAAATGGATTTCAAACCCGTGCCGTCGCCCTTCACAA
AATCCCCGCCCTGGACCGAGGGGGAGGGAGAGAGGGAGGGAGGGAGAGAG
GGACGACGGGTTAGACGAAAGAAAGTCCAACATTTGCGCACGTGTTCTCC
TAGAAAGCTTCCAATGCGTGTCGTTGACCTTCATAAAATCTCCACCTGTA
GTAGTAATGAACAACATAAATAATGAAGGAATGATAAATAAAAAAGTGAA
ATGAATACATATATGAAGTAAATGGACCGACACAGAGAAAATGATGATGA
ATAAAAGCCTACCTGAATCATAAAATCCTTAATCACCCGATGAAAAGGCG
ACCCCTTGTAGCCGATCGGCAAGCCACTCTCCCTATATTCCCCCGTGCAA
AATTGTCGGAAATTCTCCACAGTCTTGGGTGCCACGTCTCTGAAAAGTTC
CATCTTAATCCGGCCTGCAGGCCGTGTAGCGATCGAAATGTCCATGAACA
CCACCGGGTTCCCACGGGAAACAGCTTCGAGTACAGCAGGGTCCGCCATG
GTAGTTTTGGGAGCGTGCCT back to topprotein sequence of NO28G01050.1 >NO28G01050.1-protein ID=NO28G01050.1-protein|Name=NO28G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MPRTKGAPKRDAHALVQVSKRSVAVEDLSDDEWIPPSTKAIIGDHGGVGE
EEEEKVGGVKKQEKPQQQKKDKSTLSKTIMTYKDTGETFDPESIAAQYME
AAGGGGGGMAQLGLAMHNQLLTSARLAAADSGGSAVSVDMLESPGKRTTM
AVEYRLNKKLYMDKVPHYETQEVAAVLTAVLRRQSTKRRKATTTHPSVKV
EEVAKRSPPLFWSIFWNFQADVHRGLGAVLGMAESLMATGEEGEG* back to topmRNA from alignment at chr28:332628..335084- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G01050.1 ID=NO28G01050.1|Name=NO28G01050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2457bp|location=Sequence derived from alignment at chr28:332628..335084- (Nannochloropsis oceanica)
AAAATGCATGCTAAATATTTTTGTTGGGCCAAGCAAGTTACCTCCACAAT
CCCAAAAATAAATCTCTTTTGACCCACCACCGCACGAGAACAATAGTGCG
ACACTCACTGTGATGCGTCCTGCTGCAGTGACGAGGATCATGCTTTCACT
CAGCTGAAGTCCAGTCCAGGCCATTCAACCTCCTCCCCCCATCTCCCCCC
TCACAGCCCCTGAGCAAACATGCCCCGTACGAAGGGGGCCCCGAAGCGCG
ATGCCCACGCGCTAGTGCAAGTGAGCAAACGATCCGTGGCGGTGGAGGAC
TTAAGCGACGATGAGTGGATTCCTCCCTCCACGAAAGCCATAATCGGCGA
CCATGGCGGTGTGGGGGAGGAAGAGGAGGAGAAGGTGGGAGGTGTTAAGA
AGCAGGAAAAGCCGCAGCAGCAGAAGAAGGATAAGTCCACGCTAAGCAAG
ACCATCATGACGTACAAAGACACCGGGGAGACCTTTGATCCCGAAAGCAT
CGCTGCGCAATACATGGAAGCGGCAGGTGGAGGAGGGGGAGGGATGGCAC
AGTTGGGCTTGGCCATGCACAACCAACTTCTGACGTCGGCGCGATTGGCG
GCTGCTGATAGCGGGGGAAGTGCCGTCAGTGTGGACATGCTTGAGAGTCC
TGGAAAACGGACGACGATGGCGGTGGAGTATAGGCTCAATAAGAAGTTGT
ACATGGACAAAGTGCCACACTACGAGACGCAGGAGGTGGCAGCTGTGTTG
ACGGCAGTCTTGCGGAGACAGTCTACGAAGCGACGGTAAGAAGGAGGCTG
CTCTATGCATTCAGTCCTAGACTCCTCATCTCTCTTTGTATCTCTCTCTT
CTTCTGGTACCAAAAACTACAGCAAAGCGACCACTACCCACCCCTCGGTC
AAGGTAGAAGAGGTGGCAAAGCGTAGCCCGCCCTTATTTTGGTCAATCTT
TTGGAATTTTCAAGCTGATGTGCACAGGGGTTTAGGGGCGGTACTGGGCA
TGGCTGAGTCCCTGATGGCGACAGGGGAGGAGGGGGAAGGGTAAGACGGA
CAGAGAGGACAAGGAAGAGATGGTGATGGTGTAAATGGTGGGCTATGACA
TCGATCAGAAGCTAAAGCTGTGATTGTGGCGGCGGGGGAGGAGAATGGAA
ATATGTTTTTCATAGCCGTGTACACAGGTGGAGAGACACGAGCGGGGAGG
TCAAGTGTGAGCGGAATAGGAAAGTAGAGATCGGTTGGGAGACTTTGCGA
CAGGAAAAAAAGAAAAGTAGGAATAGAAATTTACATCATGTGCGAAAAAT
ATACATCTTTACTTATTCTGGCCTCTTGGAAAAATCGAATCAAATCGTAA
AGGCAGCAAATCATCACGTTCGCAAGGCTCTCTATACGCATTTTTTTACC
TGCCTTCCATTATTTATTCTTTGTGTCCCTTCTAACATTTGTGCATCATT
TCATGGCATTTCTTTCTCCTCCTTCCCTCCGCCCTCCTCCTCCTCCTCCT
CCTTCTCCTCGATGAACGTACCCGCATCCCCCTACCCTCTTTAGCCATTT
CACAAACCGTTACCAAAAACTCACTAGAGTCAATGTTGTCGCGATTGTTA
TTGTACAGTCATTTTCTCCTGGCCGTCAAGGTCATGTCTATGCTTACTTA
CAGCTCTCCGCACTCGACCACCTCAACCTTGAGGCGCTTTACGTCTGTGT
TTTCGATCTTCCGAACGGTCAACATGGACGCCGCGTCGAGCACCTTTCCA
AAAACCACGTGCTTCCCATCCAGCCACTCGCACTTGTTGCAGGTGATGAA
AAACTGACACCCATTACTGTTGGGGCCGCTGTTGGCCATGCTCAGGAGGC
CGGGACCCGTATGCCGCAGGTCGAAGCCTTCGTCTGCAAATTTGTCGCCA
TAAATGGATTTCAAACCCGTGCCGTCGCCCTTCACAAAATCCCCGCCCTG
GACCGAGGGGGAGGGAGAGAGGGAGGGAGGGAGAGAGGGACGACGGGTTA
GACGAAAGAAAGTCCAACATTTGCGCACGTGTTCTCCTAGAAAGCTTCCA
ATGCGTGTCGTTGACCTTCATAAAATCTCCACCTGTAGTAGTAATGAACA
ACATAAATAATGAAGGAATGATAAATAAAAAAGTGAAATGAATACATATA
TGAAGTAAATGGACCGACACAGAGAAAATGATGATGAATAAAAGCCTACC
TGAATCATAAAATCCTTAATCACCCGATGAAAAGGCGACCCCTTGTAGCC
GATCGGCAAGCCACTCTCCCTATATTCCCCCGTGCAAAATTGTCGGAAAT
TCTCCACAGTCTTGGGTGCCACGTCTCTGAAAAGTTCCATCTTAATCCGG
CCTGCAGGCCGTGTAGCGATCGAAATGTCCATGAACACCACCGGGTTCCC
ACGGGAAACAGCTTCGAGTACAGCAGGGTCCGCCATGGTAGTTTTGGGAG
CGTGCCT back to topCoding sequence (CDS) from alignment at chr28:332628..335084- >NO28G01050.1 ID=NO28G01050.1|Name=NO28G01050.1|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at chr28:332628..335084- (Nannochloropsis oceanica)
ATGCCCCGTACGAAGGGGGCCCCGAAGCGCGATGCCCACGCGCTAGTGCA
AGTGAGCAAACGATCCGTGGCGGTGGAGGACTTAAGCGACGATGAGTGGA
TTCCTCCCTCCACGAAAGCCATAATCGGCGACCATGGCGGTGTGGGGGAG
GAAGAGGAGGAGAAGGTGGGAGGTGTTAAGAAGCAGGAAAAGCCGCAGCA
GCAGAAGAAGGATAAGTCCACGCTAAGCAAGACCATCATGACGTACAAAG
ACACCGGGGAGACCTTTGATCCCGAAAGCATCGCTGCGCAATACATGGAA
GCGGCAGGTGGAGGAGGGGGAGGGATGGCACAGTTGGGCTTGGCCATGCA
CAACCAACTTCTGACGTCGGCGCGATTGGCGGCTGCTGATAGCGGGGGAA
GTGCCGTCAGTGTGGACATGCTTGAGAGTCCTGGAAAACGGACGACGATG
GCGGTGGAGTATAGGCTCAATAAGAAGTTGTACATGGACAAAGTGCCACA
CTACGAGACGCAGGAGGTGGCAGCTGTGTTGACGGCAGTCTTGCGGAGAC
AGTCTACGAAGCGACGCAAAGCGACCACTACCCACCCCTCGGTCAAGGTA
GAAGAGGTGGCAAAGCGTAGCCCGCCCTTATTTTGGTCAATCTTTTGGAA
TTTTCAAGCTGATGTGCACAGGGGTTTAGGGGCGGTACTGGGCATGGCTG
AGTCCCTGATGGCGACAGGGGAGGAGGGGGAAGGGTAA back to top
|