NO28G00920, NO28G00920 (gene) Nannochloropsis oceanica

Overview
NameNO28G00920
Unique NameNO28G00920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2076
Alignment locationchr28:301443..303518 -

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Properties
Property NameValue
DescriptionBulb-type lectin domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:301443..303518 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036426Bulb-type_lectin_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Homology
BLAST of NO28G00920 vs. NCBI_GenBank
Match: EWM20901.1 (Bulb-type lectin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 645.2 bits (1663), Expect = 1.600e-181
Identity = 321/465 (69.03%), Postives = 375/465 (80.65%), Query Frame = 0
Query:    2 KATTASDLMATGLDAMRKFLLMQYPYEFEICLFAFCLGASMRVRPSAQHSWLHHLVLVFLTGFAGGTIIPMFFGRTPVIFVNDVLVPLVCLSWYLVHFTCAGPLLQSSPLKFVLVCLFEIYRAASIIKTVGQVAADIPPGPYYPIPLVGPVLVGTLSGSMGAFMPPDRGISFLASGVPLNLQTTILACTFFHFAAHDPHLVGAYLRGLPGLRLNEPENLKALTVFFFVAMAFISLIKGPDYNPFAPFHRTLYQLLGIPLSPATEERLXXXXXXXXXXXXXXXXXXXXXXKDKSHLLQGSKILVPILAILAYQFAGTGKIFPRTSLPVGGRLNPGDYLSACGLAKTYAGQCTQQHFLTLDADGRLSLYKGTSPKDTGSQRVWQSKNTKKAGKLSDAGIFAELRPEGVLVLKHTGDGENVYWSSPAMKK--KQKGKEGGRKVRVQVMERGAFGVFEGEKALWTSDGL 465
            K   ASDL+ T  +  RKFLLMQYPYEFE+CLFAFCLGASMRVRPSAQ+SWLHHLVLVFLTGFAGGTIIPMFFGRTPV+FVND+LVPLVCLSWYLVH+T  G LLQ+SP KF+LV LFEIYRAASI+KTVGQ   DI PGPYYPI +VGPVLVGTLSGSMGAFMPPDRGISFLA+GVPLNLQTT+LAC F+H AAHDP L GAYLRGLP LRL++PENLKALTVFFFVAMAF+SL+KGPDYNPF P H  LYQ+LGIP SPAT ERL                      K    LL  SK+LVP+LA+LAYQ    GK+ PRT+LPVGGRL+PG+Y++ACG  +++ G C +QHFLTLDA+GRLSLY+G SPKD GS R+WQSK T+++GK ++AG+FAEL   GVLVLKHT  G+  YW+S + K   ++KG++ GR + ++V+ERGAFG+FEG   LWTSDG+
Sbjct:    3 KMIPASDLVTTLFEVARKFLLMQYPYEFEVCLFAFCLGASMRVRPSAQYSWLHHLVLVFLTGFAGGTIIPMFFGRTPVLFVNDLLVPLVCLSWYLVHYTRVGGLLQTSPCKFLLVALFEIYRAASILKTVGQATTDIAPGPYYPIAVVGPVLVGTLSGSMGAFMPPDRGISFLATGVPLNLQTTLLACLFYHLAAHDPALPGAYLRGLPALRLSDPENLKALTVFFFVAMAFLSLVKGPDYNPFTPVHTLLYQVLGIPHSPATLERL----KSTRRAPNAGDHGPKPAVKASGRLLGASKVLVPLLAMLAYQL--QGKLAPRTTLPVGGRLHPGEYIAACGPLQSFTGHC-KQHFLTLDAEGRLSLYRGASPKDAGSHRLWQSKATRRSGKPTEAGLFAELNEGGVLVLKHTAGGDATYWTSSSRKTEGEKKGQDAGR-LHLRVLERGAFGIFEGSTPLWTSDGI 459          
BLAST of NO28G00920 vs. NCBI_GenBank
Match: CBJ33404.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 141.0 bits (354), Expect = 9.600e-30
Identity = 89/278 (32.01%), Postives = 133/278 (47.84%), Query Frame = 0
Query:   20 FLLMQYPYEFEICLFAFCLGASMRVRPSA---------------------------------QHSWLHHLVLVFLTGFAGGTIIPMFFGRTPVIFVNDVLVPLVCLSWYLVHFTCAGP---LLQSSPLKFVLVCLFEIYRAASIIKTVGQVAADIPPGPYYPIPLVGPVLVGTLSGSMGAFMPPDRGISFLASGVPLNLQTTILACTFFHFAAHDPHLVGAYLRGLPGLRLNEPENL--KALTVFFFVAMAFISLIKGPDYNPFAPFHRTLYQLLGIP 260
            FL   + Y  E+CL AF L  S R    A                                 Q  W   LV+ ++  F GG + P   G+ PV+FVND++VPLV + W+ V     GP   L+ +  +K V++ L E++RA S+   V    + + PG +YPI L GP+L+GT+ G  G F+P D+G+  L +G P  LQ+      FF+   +DP+ VG YLR    L L+    +  +A+   F   +A    +  P +NPF P H  +Y + G+P
Sbjct:    7 FLTQNWEYGAEVCLAAFALFHSAREIKQACDALRLACAGSGALTFKQKAKILVRKIEKDSGKQMFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPLVAVCWF-VSNRAEGPIFALINTPIMKQVILVLSEVFRANSMCGIVVLSNSILKPGKHYPIALWGPILLGTVGGCGGLFLPLDKGLKGLKNGAPWPLQSAFYGSMFFNLFVYDPN-VGPYLRDAAALFLDGDLVVQGRAIVAGFLCVVALAQTLISPAFNPFTPVHNVVYTVTGVP 282          
BLAST of NO28G00920 vs. NCBI_GenBank
Match: CBJ25916.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.0 bits (284), Expect = 1.300e-21
Identity = 117/412 (28.40%), Postives = 175/412 (42.48%), Query Frame = 0
Query:   76 RTPVIFVNDVLVPLVCLSWYLVHFTCAGP----LLQSSPLKFVLVCLFEIYRAASIIKTVGQVAADIPPGPYYPIPLVGPVLVGTLSGSMGAFMPPDRGISFLASGVPLNLQTTILACTFFHFAAHDPHLVGAYLRGLPGLRLNEPENLKALTVFFFVAMAFISLIKGPDYNPFAPFHRTLYQLLGIPLSPATEE--------------------RLXXXXXXXXXXXXXXXXXXXXXXKDKSHLLQGSKILVPILAILA-YQFAGTGKIFPRTSLPVGGRLNPGDYLSACG-LAKTYAGQCTQQHFLTLDADGRLSLYKGTSPKDTGSQRVWQSKNTKKAGKLSDAGIFAELRPEGVLVLKHTGDGENVYWSSPAMKKKQKGKEGGRKVRVQVMERGAFGVFEGEKALWTS 462
            R P +F+N+ L+ + C+  + +      P     +++  L   +  L    R   I   V       PP PYYPI L GP+++G   G  G+ +P D+G+S ++  +P  +Q      TF+H  A+D +++G  +RG  GL     E+++ + V F V +  I     P +NPF P H+ LY + G+P +  T E                      XXXXXXXXXXXXX         K +S L     + V  +A+LA Y       I P   +  G     G  L++C  L K  +  CT                   +  +TGS  V++ K              A+ + EG        DG  V WSSPA KK     E    V++ + E G   V  G+K LW+S
Sbjct:    2 RDPPLFLNNDLL-VTCIMVFFLFSVVFDPYVVNFIKTPHLWKAMALLSTTSRMNKICFIVDYALTKFPPSPYYPIALFGPIMIGLARGIGGSLVPADKGLSSISKDLPWAVQLCFSVATFYHVVANDTYILGGMVRGALGLENATREDIRLIAVTFGVVVTVIQTYYAPKFNPFTPAHQALYTVTGMPKTAITIEVPRSTPSTDADKAKDNXXXXXXXXXXXXXXXXXXXGLYDLKTRKKIQSFLEALKPVGVAAVAVLALYSRQPPSTIIPGVVVKAG-----GSGLASCAFLPKVLSNGCTPLR---------------AAVTETGSLVVYRGKEVPVLPA-------AKKKVEG-------DDGPEVLWSSPAPKKLAAEDE----VQLDLSEDGILSVMAGDKKLWSS 374          
BLAST of NO28G00920 vs. NCBI_GenBank
Match: GAX25268.1 (hypothetical protein FisN_5Lh352 [Fistulifera solaris])

HSP 1 Score: 99.0 bits (245), Expect = 4.200e-17
Identity = 70/252 (27.78%), Postives = 120/252 (47.62%), Query Frame = 0
Query:   14 LDAMRKFLLMQYPYEFEICLFAFCLGASMRVRPSAQHS----WLHHLVLVFLTGFAGGTIIPMFFGRTPVIFVNDVLVPLVCLSWYLVHFT---CAGPLLQSSPLKFVLVCLFEIYRAASIIKTVGQV--AADIPPGPYYPIPLVGPVLVGTLSGSMGAFMPPDRGI-SFLASGVPLNLQTTILACTFFHFAAHDPH-LVGAYLR-GLPGLR--LNEPENLKALTVFFFVAMAFISL--IKGPDYNPFAPFH 250
            +D++ +F    +PY  E          +M VR     +    W H  VL  +  F GG +  ++ G+   +  NDV       ++ +V++T       + ++ P+  V+    +++RA+ I+K V     A    P PYYPIP+ GP+L GTL G+M  F+   +G+   ++ G+P  +Q  +   TF+HF  HD    VG +LR  +P  +  L + E    +  +F   +  + L    GP ++PF  FH
Sbjct:    1 MDSIVQFATYSFPYAAEFQAIGMAFQGAMAVRSGPNKNGTLHWFHAFVLSVMAAFTGGWLGFIWMGKPSSMLSNDVNFASCIFAFVVVNYTPGDIGYMICRTLPVTLVITSSAQLFRASGIMKFVAACYDAFKDNPSPYYPIPVFGPILYGTLLGNMAGFLM--KGLEGHVSKGMPWPVQNGLFCATFYHFFVHDSSGPVGTFLRTSIPARQFGLKDVEFASCVVTYFMQLVGILQLPEFLGPSWSPFNLFH 250          
BLAST of NO28G00920 vs. NCBI_GenBank
Match: GAX16973.1 (hypothetical protein FisN_5Hh352 [Fistulifera solaris])

HSP 1 Score: 97.1 bits (240), Expect = 1.600e-16
Identity = 70/251 (27.89%), Postives = 121/251 (48.21%), Query Frame = 0
Query:   14 LDAMRKFLLMQYPYEFEICLFAFCLGASMRVRPSAQHS----WLHHLVLVFLTGFAGGTIIPMFFGRTPVIFVNDVLVPLVCLSWYLVHFT---CAGPLLQSSPLKFVLVCLFEIYRAASIIKTVGQV--AADIPPGPYYPIPLVGPVLVGTLSGSMGAFMPPDRGI-SFLASGVPLNLQTTILACTFFHFAAHDPH-LVGAYLR-GLPG--LRLNEPENLKALTVFFFVAMAFISL--IKGPDYNPFAPF 249
            +D++ +F    +PY  E          +M VR     +    W H  VL  +  F GG +  ++ G+   +  NDV       ++ +V++T       + ++ P+  V+    +++RA+ I+K V     A    P PYYPIP+ GP+L GTL G+M  F+   +G+   ++SG+P  +Q  +   TF+HF  HD +  VG +LR  +P     L + E    +  +F   +  + L    GP+++PF  F
Sbjct:    1 MDSIVQFATYSFPYAAEFQAIGMAFQGAMAVRSGPNKNGTLHWFHAFVLSVMAAFTGGWLGFIWMGKPSSMLSNDVNFASCIFAFVVVNYTPGDIGYMICRTLPVTLVITSSSQLFRASGIMKFVAACYDAFKDNPSPYYPIPVFGPILYGTLLGNMAGFLM--KGLEGHVSSGMPWPVQNGLFCATFYHFFVHDLNGPVGTFLRTSIPAGQFGLKDREFASCVVTYFMQIVGILQLPEFLGPNWSPFNLF 249          
BLAST of NO28G00920 vs. NCBI_GenBank
Match: OEU09611.1 (hypothetical protein FRACYDRAFT_212285 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 82.8 bits (203), Expect = 3.100e-12
Identity = 67/247 (27.13%), Postives = 119/247 (48.18%), Query Frame = 0
Query:   14 LDAMRKFLLMQYPYEFEICLFAFCLGASMRVR----PSAQHSWLHHLVLVFLTGFAGGTIIPMFFGR-TPVIFVNDVLVPLVCLSWYLVHFT---CAGPLLQSSPLKFVLVCLFEIYRAASIIKTVGQVAADIPPGPYYPIPLVGPVLVGTLSGSMGAFMPPDRGIS-FLASGVPLNLQTTILACTFFHFAAHDPH-LVGAYLRGL---PGLRLNEPENLKA-LTVFFFVAMAFISLIK---GPDYN 244
            ++++   L    PY  E+  F      +M VR     + + +W H   L  + GF GG    ++ G+ T +I   D+ + L  +++ +  +T       L  S P+K V+ C  +++RA  +I  +   AA++ P  YYP  ++GPV+ GTL G+MG+F    +G +  L   +P   Q  ++   F+H   HD +  +G  LR      G++ +  + L A L V  F+ +  + ++    GP YN
Sbjct:    2 IESIVNILTGSSPYNVELRTFGQAFMGAMAVRSGKNKNKEMNWFHAFALSTIVGFGGGWFGFVWMGKPTSLITNGDITLTLTAIAFVISTYTPMDIGYKLGSSLPVKIVMNCWAQLFRALGMIGFINACAAEVGPSKYYPTAILGPVVYGTLLGNMGSFFL--KGFNQHLEKAIPWPFQNGLVMGFFYHVYTHDINGSMGITLRSAVQSTGIQGSMDDKLFAILVVTSFMQVTGVLMLPEFFGPTYN 246          
BLAST of NO28G00920 vs. NCBI_GenBank
Match: XP_005769635.1 (hypothetical protein EMIHUDRAFT_470318 [Emiliania huxleyi CCMP1516] >EOD17206.1 hypothetical protein EMIHUDRAFT_470318 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 82.4 bits (202), Expect = 4.100e-12
Identity = 61/241 (25.31%), Postives = 105/241 (43.57%), Query Frame = 0
Query:    2 KATTASDLMATGLDAMRKFLLMQ--YPYEFEICLFAFCLGASMRVRPSAQH-SWLHHLVLVFLTGFAGGTIIPMFFGRTPVIFVNDVLVPLVCLSWYLVHFTCAGPLLQSSPL-KFVLVCLFEIYRAASIIKTVGQVAADIPPGPYYPI------PLVGPVLVGTLSGSMGAFMPPDRGISFL-ASGVPLNLQTTILACTFFHFAAHDPHLVGAYLRGLPGLRLNEPENLKALTVFFFVAM 232
            KA        T L+ +R  LL Q  Y + + I L  +C      ++ +    +W + + L  LT F GG ++P+  G      +N+ L+P + ++W  V +      L  SP  +      FE++R   +       +  +PP    P+       LVGP+L G + G  GAFMP   G+  L  S +P  +Q++ +   + H   HD  +  +    +P L   +P  +K   + FF  +
Sbjct:    3 KAPVPLPAAPTPLEVLRDVLLFQGDYAFAYYIFLALYCAACCRNLKEALPRLTWFYAIPLAVLTSFGGGIMVPVLLGLPAAPLINEALIPTMIIAWACVQYLHPVLALLQSPFGRAASNSGFEVFRYHVLAICSDLASKTLPPVSTGPLAGTLSCALVGPLLCGMIGGCGGAFMPLSNGLKALEGSTIPWRVQSSAVMSAWHHLLTHDAAVRASAAEYVPFLA--DPAMVKLCGILFFAGL 241          
BLAST of NO28G00920 vs. NCBI_GenBank
Match: XP_002294605.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED87965.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 79.7 bits (195), Expect = 2.600e-11
Identity = 59/207 (28.50%), Postives = 91/207 (43.96%), Query Frame = 0
Query:   14 LDAMRKFLLMQYPYEFEICLFAFCLGASMRVR--PSAQHS--WLHHLVLVFLTGFAGGTIIPMFFGRTPVIFVNDVLVPLVCLSWYLVHF---TCAGPLLQSSPLKFVLVCLFEIYRAASI--IKTVGQVAADIPPGPYYPIPLVGPVLVGTLSGSMGAFMPPDRGI-SFLASGVPLNLQTTILACTFFHFAAHDPH-LVGAYLRGL 210
            L+ + + + M +PY  E   +   +  SM VR  P+   S  W H      LT +AG T   +F GR   +F ND+      L +  V+F        L  +   +F+     +I+R   +              P PYYP P+ GP+L  ++ G+MG F     G  ++L  G+P   Q  +    F+HF AHD    +G  LRG+
Sbjct:    2 LNPLVRLITMDFPYATETVCYFMAVQGSMAVRNGPNKHKSMHWFHAFFKSTLTAYAGATFTNIFMGRPTAMFANDIFFGACILGFVTVNFLPMDVGYHLFNTFIGEFLATVFSQIFRVGGVTGFSDAAYGMFKDSPSPYYPTPVFGPILFPSVLGNMGGFF--FNGFDAYLEKGMPWLFQQGLSCSMFYHFYAHDSEGAIGQTLRGI 206          
BLAST of NO28G00920 vs. NCBI_GenBank
Match: XP_002178767.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC49465.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 75.5 bits (184), Expect = 5.000e-10
Identity = 66/258 (25.58%), Postives = 116/258 (44.96%), Query Frame = 0
Query:    9 LMATGLDAMRKFLLMQYPYEFEICLFAFCLGASMRVR--PSAQHS--WLHHLVLVFLTGFAGGTIIPMFFGRTPVIFVNDVLVPLVCLSWYLVHFT-------CAGPLLQSSPLKFVLVCLFEIYRAASIIKTVGQVAADI--PPGPYYPIPLVGPVLVGTLSGSMGAFMPPDRGISFLASGVPLNLQTTILACTFFHFAAHD-PHLVGAYLR------GLPGLRLNEPENLKALTVFFFV-AMAFISLIKGPDYNPF 246
            + +  ++ + +F    + +  E+  F   +  +M VR  P+   S  W H   L  + GF GG +  ++ GR   +  ND+ +    +++ LV++T       C   ++     K   V   +++R+  + K V          P  YYPIP+ GP+L  TL G+MG F+       F A+G+P  +Q  +   TF+HF  +D    +G +LR         G + N+   L  +T+F  V  +  +    GP + PF
Sbjct:    1 MSSLAMELLVQFSSGDFAFSGELQAFWMAVQGAMMVRLGPNKDRSLNWFHAFSLSVIGGFGGGWLGFIWMGRPSSMLSNDLNMASCIVAFILVNYTPMDIGFKCCNNIMG----KIATVVFAQLFRSLGVAKFVMVCFETFKDSPSAYYPIPVFGPILYATLLGNMGGFVLKGFNGHF-ANGMPWPVQNGLFCATFYHFYVNDQTGPIGIFLRKSLRMAHFLGFKDNQTFALVVVTMFMQVMGILQMPTFLGPSFTPF 253          
BLAST of NO28G00920 vs. NCBI_GenBank
Match: XP_002287366.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94809.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 68.6 bits (166), Expect = 6.100e-8
Identity = 46/180 (25.56%), Postives = 86/180 (47.78%), Query Frame = 0
Query:   19 KFLLMQYPYEFEICL--FAFCLGASMRVRPSAQHSWLHHLVLVFLTGFAGGTIIPMFFGRTPVIFVNDVLVPLVCLSWYLVH--FTCAGPLLQSSPL-KFVLVCLFEIYRAASIIKTVGQVAADIPPGPYYPIPLVGPVLVGTLSGSMGAFMPPDRGISFLASGVPLNLQTTILACTFFH 194
            +FL +       +C+  + F  G+ +      + S+ + LV + L    GG ++P+F    PV   ND   P+  L  + +H  F     +++ SP+     + ++E  RA  ++      +A I P   +  PL GP++ GT++G  GAF+P  +G+S + +G+   + T  +  T  H
Sbjct:   23 QFLTLHQKEVLYMCMLGYTFMHGSKVFAAAPKEASFSYKLVSMILACTGGGILVPIFLNGIPVPLANDA-YPIAILLSFAIHYYFPIVREVVKLSPIVNSCFIIMYEAVRAKVVLTFTVAASAAIAPST-FSFPLFGPIMCGTIAGCGGAFLPMSKGLSPIENGMQYPMITAFIGATLAH 200          
The following BLAST results are available for this feature:
BLAST of NO28G00920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
EWM20901.11.600e-18169.03Bulb-type lectin domain protein [Nannochloropsis g... [more]
CBJ33404.19.600e-3032.01conserved unknown protein [Ectocarpus siliculosus][more]
CBJ25916.11.300e-2128.40conserved unknown protein [Ectocarpus siliculosus][more]
GAX25268.14.200e-1727.78hypothetical protein FisN_5Lh352 [Fistulifera sola... [more]
GAX16973.11.600e-1627.89hypothetical protein FisN_5Hh352 [Fistulifera sola... [more]
OEU09611.13.100e-1227.13hypothetical protein FRACYDRAFT_212285 [Fragilario... [more]
XP_005769635.14.100e-1225.31hypothetical protein EMIHUDRAFT_470318 [Emiliania ... [more]
XP_002294605.12.600e-1128.50predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002178767.15.000e-1025.58predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002287366.16.100e-825.56predicted protein [Thalassiosira pseudonana CCMP13... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004895NSK004895Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00920.1NO28G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560357gene_9196Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100156g10gene9512Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00920.1NO28G00920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00920 ID=NO28G00920|Name=NO28G00920|organism=Nannochloropsis oceanica|type=gene|length=2076bp
AGATAGGGGAAAGCAAGCAGACAGGACCAGCATCGCTTCTTCCCTTTTGG
TTCTTTATCTCCCAATCCGCGCAAAGTCAAGCGAATAGCACTATGAAGGC
AACCACTGCGAGTGACCTTATGGCGACCGGCCTGGATGCCATGCGCAAGT
TTTTGCTTATGCAGTACCCTTATGAGTTTGAGgtaggtgcaacgaaggag
gactggtgatggggtcgggggtagctgtcgtgaggaaacaaccgacagag
gcaacgctgaagagcggccgcgacgtctcacgacgacatacgcttcccgg
actgaatgttgtttagcttgttgcgaaagatggggcttgacattgtgcac
gcacacacatctcctatttatatccactccctccctcctcctacgacata
gATCTGTCTTTTCGCCTTCTGCCTCGGTGCCTCCATGCGAGTCCGGCCCT
CAGCCCAACACTCATGGCTCCACCACCTTGTCCTAGTCTTCCTCACCGGC
TTCGCAGGCGGGACCATCATCCCTATGTTCTTCGGACGCACCCCCGTTAT
CTTCGTAAACGATGTCCTCGTCCCCCTCGTCTGCCTCTCGTGGTACCTTG
TCCACTTTACATGTGCCGGCCCGTTGCTCCAATCCTCCCCTTTGAAATTC
GTCCTCGTCTGCCTCTTCGAAATTTACCGTGCCGCCAGCATTATCAAAAC
TGTCGGTCAGGTTGCCGCGGACATCCCTCCCGGGCCTTATTATCCCATTC
CATTGGTTGGTCCCGTCCTCGTTGGCACTCTCTCCGGAAGCATGGGCGCC
TTCATGCCCCCCGACCGCGGCATCTCCTTCCTCGCCTCCGGCGTGCCTCT
CAACCTTCAAACCACCATACTGGCCTGCACATTTTTTCATTTCGCCGCAC
ATGATCCCCACTTAGTAGGCGCCTACCTCCGAGGGTTACCCGGACTGAGG
CTCAACGAACCCGAGAACCTCAAGGCACTCACTGTTTTCTTCTTCGTCGC
CATGGCCTTTATCTCTTTGATCAAAGGACCGGATTACAACCCCTTTGCCC
CTTTCCACCGCACCCTCTACCAACTTCTCGGTATTCCACTTTCCCCCGCA
ACCGAAGAACGCCTCAAGGCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGTCGTCGTCCCCCCTCCACGAAGGACAAAAGCCACCTAT
TACAAGGAAGCAAGATCCTCGTCCCCATCCTTGCCATCCTCGCCTATCAA
TTTGCCGGCACTGGCAAGATCTTTCCCCGCACTAGCCTGCCCGTCGGTGG
GCGCCTGAATCCGGGTGACTACTTGTCAGCCTGCGGTCTAGCCAAGACCT
ACGCCGGTCAATGTACTCAGCAGCACTTCCTCACTCTTGACGCCGATGGT
CGGCTATCCCTCTACAAGGGTACCTCTCCGAAGGACACGGGCAGTCAGAG
GGTGTGGCAGAGCAAGAACACGAAGAAGGCCGGGAAGTTGTCGGATGCCG
GCATATTCGCCGAGCTCCGACCGGAAGGAGTGTTGGTGTTGAAGCACACA
GGAGACGGGGAAAATGTGTATTGGTCGTCGCCCGCAATGAAAAAGAAGCA
GAAGGGAAAGGAGGGGGGCAGGAAAGTCAGGGTGCAGGTGATGGAACGGG
GGGCGTTTGGAGTGTTTGAAGGGGAGAAGGCGCTGTGGACGAGCGATGGG
TTGGGGTTGAATGCCTAAGGACGTGCTCGAGGCAATTTCTCTCCCTCCTT
CCCTCAGTACTTTCTCCTTTGCTCGATTCTACATGCTTAGTATTAATAGC
ATGGACTGGGTGGTTTCTACAGGAGGGATGGTGGGAAGAAGGGCTGCAAA
TTTGTGTGTAATGTGAAATGATAAGAGAGAAGAAATGATGACGGTAACCG
AGAGAGAGACCGAGGCTGACATAGCGCAAGGGAATGATGTCTTTCTTGTT
TAATGTACTGCATGTATTTTGGTTCGAAGGTGCATGCAACAGGGTGAAAA
GAAGGAGAAGGTAGGGATGACAATGCTACCAAAGTACTTATTCGGCGATC
TCAAAGTATCATCCCTTAAGCTCACT
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protein sequence of NO28G00920.1

>NO28G00920.1-protein ID=NO28G00920.1-protein|Name=NO28G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MKATTASDLMATGLDAMRKFLLMQYPYEFEICLFAFCLGASMRVRPSAQH
SWLHHLVLVFLTGFAGGTIIPMFFGRTPVIFVNDVLVPLVCLSWYLVHFT
CAGPLLQSSPLKFVLVCLFEIYRAASIIKTVGQVAADIPPGPYYPIPLVG
PVLVGTLSGSMGAFMPPDRGISFLASGVPLNLQTTILACTFFHFAAHDPH
LVGAYLRGLPGLRLNEPENLKALTVFFFVAMAFISLIKGPDYNPFAPFHR
TLYQLLGIPLSPATEERLKASSSSSSSSSSSSSSRRPPSTKDKSHLLQGS
KILVPILAILAYQFAGTGKIFPRTSLPVGGRLNPGDYLSACGLAKTYAGQ
CTQQHFLTLDADGRLSLYKGTSPKDTGSQRVWQSKNTKKAGKLSDAGIFA
ELRPEGVLVLKHTGDGENVYWSSPAMKKKQKGKEGGRKVRVQVMERGAFG
VFEGEKALWTSDGLGLNA*
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Synonyms
Publications