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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr28 | genome | chr28:301443..303518 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO28G00920.1 vs.
Match: EWM20901.1 (Bulb-type lectin domain protein [Nannochloropsis gaditana]) HSP 1 Score: 646.4 bits (1666), Expect = 7.000e-182 Identity = 323/465 (69.46%), Postives = 383/465 (82.37%), Query Frame = 0
Query: 2 KATTASDLMATGLDAMRKFLLMQYPYEFEICLFAFCLGASMRVRPSAQHSWLHHLVLVFLTGFAGGTIIPMFFGRTPVIFVNDVLVPLVCLSWYLVHFTCAGPLLQSSPLKFVLVCLFEIYRAASIIKTVGQVAADIPPGPYYPIPLVGPVLVGTLSGSMGAFMPPDRGISFLASGVPLNLQTTILACTFFHFAAHDPHLVGAYLRGLPGLRLNEPENLKALTVFFFVAMAFISLIKGPDYNPFAPFHRTLYQLLGIPLSPATEERLKASSSSSSSSSSSSSSRRPPSTKDKSHLLQGSKILVPILAILAYQFAGTGKIFPRTSLPVGGRLNPGDYLSACGLAKTYAGQCTQQHFLTLDADGRLSLYKGTSPKDTGSQRVWQSKNTKKAGKLSDAGIFAELRPEGVLVLKHTGDGENVYWSSPAMKK--KQKGKEGGRKVRVQVMERGAFGVFEGEKALWTSDGL 465
K ASDL+ T + RKFLLMQYPYEFE+CLFAFCLGASMRVRPSAQ+SWLHHLVLVFLTGFAGGTIIPMFFGRTPV+FVND+LVPLVCLSWYLVH+T G LLQ+SP KF+LV LFEIYRAASI+KTVGQ DI PGPYYPI +VGPVLVGTLSGSMGAFMPPDRGISFLA+GVPLNLQTT+LAC F+H AAHDP L GAYLRGLP LRL++PENLKALTVFFFVAMAF+SL+KGPDYNPF P H LYQ+LGIP SPAT ERLK++ + ++ P+ K LL SK+LVP+LA+LAYQ GK+ PRT+LPVGGRL+PG+Y++ACG +++ G C +QHFLTLDA+GRLSLY+G SPKD GS R+WQSK T+++GK ++AG+FAEL GVLVLKHT G+ YW+S + K ++KG++ GR + ++V+ERGAFG+FEG LWTSDG+
Sbjct: 3 KMIPASDLVTTLFEVARKFLLMQYPYEFEVCLFAFCLGASMRVRPSAQYSWLHHLVLVFLTGFAGGTIIPMFFGRTPVLFVNDLLVPLVCLSWYLVHYTRVGGLLQTSPCKFLLVALFEIYRAASILKTVGQATTDIAPGPYYPIAVVGPVLVGTLSGSMGAFMPPDRGISFLATGVPLNLQTTLLACLFYHLAAHDPALPGAYLRGLPALRLSDPENLKALTVFFFVAMAFLSLVKGPDYNPFTPVHTLLYQVLGIPHSPATLERLKSTRRAPNAGDHGPK----PAVKASGRLLGASKVLVPLLAMLAYQL--QGKLAPRTTLPVGGRLHPGEYIAACGPLQSFTGHC-KQHFLTLDAEGRLSLYRGASPKDAGSHRLWQSKATRRSGKPTEAGLFAELNEGGVLVLKHTAGGDATYWTSSSRKTEGEKKGQDAGR-LHLRVLERGAFGIFEGSTPLWTSDGI 459
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO28G00920.1 ID=NO28G00920.1|Name=NO28G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1857bp
AGATAGGGGAAAGCAAGCAGACAGGACCAGCATCGCTTCTTCCCTTTTGG
TTCTTTATCTCCCAATCCGCGCAAAGTCAAGCGAATAGCACTATGAAGGC
AACCACTGCGAGTGACCTTATGGCGACCGGCCTGGATGCCATGCGCAAGT
TTTTGCTTATGCAGTACCCTTATGAGTTTGAGATCTGTCTTTTCGCCTTC
TGCCTCGGTGCCTCCATGCGAGTCCGGCCCTCAGCCCAACACTCATGGCT
CCACCACCTTGTCCTAGTCTTCCTCACCGGCTTCGCAGGCGGGACCATCA
TCCCTATGTTCTTCGGACGCACCCCCGTTATCTTCGTAAACGATGTCCTC
GTCCCCCTCGTCTGCCTCTCGTGGTACCTTGTCCACTTTACATGTGCCGG
CCCGTTGCTCCAATCCTCCCCTTTGAAATTCGTCCTCGTCTGCCTCTTCG
AAATTTACCGTGCCGCCAGCATTATCAAAACTGTCGGTCAGGTTGCCGCG
GACATCCCTCCCGGGCCTTATTATCCCATTCCATTGGTTGGTCCCGTCCT
CGTTGGCACTCTCTCCGGAAGCATGGGCGCCTTCATGCCCCCCGACCGCG
GCATCTCCTTCCTCGCCTCCGGCGTGCCTCTCAACCTTCAAACCACCATA
CTGGCCTGCACATTTTTTCATTTCGCCGCACATGATCCCCACTTAGTAGG
CGCCTACCTCCGAGGGTTACCCGGACTGAGGCTCAACGAACCCGAGAACC
TCAAGGCACTCACTGTTTTCTTCTTCGTCGCCATGGCCTTTATCTCTTTG
ATCAAAGGACCGGATTACAACCCCTTTGCCCCTTTCCACCGCACCCTCTA
CCAACTTCTCGGTATTCCACTTTCCCCCGCAACCGAAGAACGCCTCAAGG
CAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCGTCGT
CCCCCCTCCACGAAGGACAAAAGCCACCTATTACAAGGAAGCAAGATCCT
CGTCCCCATCCTTGCCATCCTCGCCTATCAATTTGCCGGCACTGGCAAGA
TCTTTCCCCGCACTAGCCTGCCCGTCGGTGGGCGCCTGAATCCGGGTGAC
TACTTGTCAGCCTGCGGTCTAGCCAAGACCTACGCCGGTCAATGTACTCA
GCAGCACTTCCTCACTCTTGACGCCGATGGTCGGCTATCCCTCTACAAGG
GTACCTCTCCGAAGGACACGGGCAGTCAGAGGGTGTGGCAGAGCAAGAAC
ACGAAGAAGGCCGGGAAGTTGTCGGATGCCGGCATATTCGCCGAGCTCCG
ACCGGAAGGAGTGTTGGTGTTGAAGCACACAGGAGACGGGGAAAATGTGT
ATTGGTCGTCGCCCGCAATGAAAAAGAAGCAGAAGGGAAAGGAGGGGGGC
AGGAAAGTCAGGGTGCAGGTGATGGAACGGGGGGCGTTTGGAGTGTTTGA
AGGGGAGAAGGCGCTGTGGACGAGCGATGGGTTGGGGTTGAATGCCTAAG
GACGTGCTCGAGGCAATTTCTCTCCCTCCTTCCCTCAGTACTTTCTCCTT
TGCTCGATTCTACATGCTTAGTATTAATAGCATGGACTGGGTGGTTTCTA
CAGGAGGGATGGTGGGAAGAAGGGCTGCAAATTTGTGTGTAATGTGAAAT
GATAAGAGAGAAGAAATGATGACGGTAACCGAGAGAGAGACCGAGGCTGA
CATAGCGCAAGGGAATGATGTCTTTCTTGTTTAATGTACTGCATGTATTT
TGGTTCGAAGGTGCATGCAACAGGGTGAAAAGAAGGAGAAGGTAGGGATG
ACAATGCTACCAAAGTACTTATTCGGCGATCTCAAAGTATCATCCCTTAA
GCTCACT back to topprotein sequence of NO28G00920.1 >NO28G00920.1-protein ID=NO28G00920.1-protein|Name=NO28G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MKATTASDLMATGLDAMRKFLLMQYPYEFEICLFAFCLGASMRVRPSAQH
SWLHHLVLVFLTGFAGGTIIPMFFGRTPVIFVNDVLVPLVCLSWYLVHFT
CAGPLLQSSPLKFVLVCLFEIYRAASIIKTVGQVAADIPPGPYYPIPLVG
PVLVGTLSGSMGAFMPPDRGISFLASGVPLNLQTTILACTFFHFAAHDPH
LVGAYLRGLPGLRLNEPENLKALTVFFFVAMAFISLIKGPDYNPFAPFHR
TLYQLLGIPLSPATEERLKASSSSSSSSSSSSSSRRPPSTKDKSHLLQGS
KILVPILAILAYQFAGTGKIFPRTSLPVGGRLNPGDYLSACGLAKTYAGQ
CTQQHFLTLDADGRLSLYKGTSPKDTGSQRVWQSKNTKKAGKLSDAGIFA
ELRPEGVLVLKHTGDGENVYWSSPAMKKKQKGKEGGRKVRVQVMERGAFG
VFEGEKALWTSDGLGLNA* back to topmRNA from alignment at chr28:301443..303518- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO28G00920.1 ID=NO28G00920.1|Name=NO28G00920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2076bp|location=Sequence derived from alignment at chr28:301443..303518- (Nannochloropsis oceanica)
AGATAGGGGAAAGCAAGCAGACAGGACCAGCATCGCTTCTTCCCTTTTGG
TTCTTTATCTCCCAATCCGCGCAAAGTCAAGCGAATAGCACTATGAAGGC
AACCACTGCGAGTGACCTTATGGCGACCGGCCTGGATGCCATGCGCAAGT
TTTTGCTTATGCAGTACCCTTATGAGTTTGAGGTAGGTGCAACGAAGGAG
GACTGGTGATGGGGTCGGGGGTAGCTGTCGTGAGGAAACAACCGACAGAG
GCAACGCTGAAGAGCGGCCGCGACGTCTCACGACGACATACGCTTCCCGG
ACTGAATGTTGTTTAGCTTGTTGCGAAAGATGGGGCTTGACATTGTGCAC
GCACACACATCTCCTATTTATATCCACTCCCTCCCTCCTCCTACGACATA
GATCTGTCTTTTCGCCTTCTGCCTCGGTGCCTCCATGCGAGTCCGGCCCT
CAGCCCAACACTCATGGCTCCACCACCTTGTCCTAGTCTTCCTCACCGGC
TTCGCAGGCGGGACCATCATCCCTATGTTCTTCGGACGCACCCCCGTTAT
CTTCGTAAACGATGTCCTCGTCCCCCTCGTCTGCCTCTCGTGGTACCTTG
TCCACTTTACATGTGCCGGCCCGTTGCTCCAATCCTCCCCTTTGAAATTC
GTCCTCGTCTGCCTCTTCGAAATTTACCGTGCCGCCAGCATTATCAAAAC
TGTCGGTCAGGTTGCCGCGGACATCCCTCCCGGGCCTTATTATCCCATTC
CATTGGTTGGTCCCGTCCTCGTTGGCACTCTCTCCGGAAGCATGGGCGCC
TTCATGCCCCCCGACCGCGGCATCTCCTTCCTCGCCTCCGGCGTGCCTCT
CAACCTTCAAACCACCATACTGGCCTGCACATTTTTTCATTTCGCCGCAC
ATGATCCCCACTTAGTAGGCGCCTACCTCCGAGGGTTACCCGGACTGAGG
CTCAACGAACCCGAGAACCTCAAGGCACTCACTGTTTTCTTCTTCGTCGC
CATGGCCTTTATCTCTTTGATCAAAGGACCGGATTACAACCCCTTTGCCC
CTTTCCACCGCACCCTCTACCAACTTCTCGGTATTCCACTTTCCCCCGCA
ACCGAAGAACGCCTCAAGGCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGTCGTCGTCCCCCCTCCACGAAGGACAAAAGCCACCTAT
TACAAGGAAGCAAGATCCTCGTCCCCATCCTTGCCATCCTCGCCTATCAA
TTTGCCGGCACTGGCAAGATCTTTCCCCGCACTAGCCTGCCCGTCGGTGG
GCGCCTGAATCCGGGTGACTACTTGTCAGCCTGCGGTCTAGCCAAGACCT
ACGCCGGTCAATGTACTCAGCAGCACTTCCTCACTCTTGACGCCGATGGT
CGGCTATCCCTCTACAAGGGTACCTCTCCGAAGGACACGGGCAGTCAGAG
GGTGTGGCAGAGCAAGAACACGAAGAAGGCCGGGAAGTTGTCGGATGCCG
GCATATTCGCCGAGCTCCGACCGGAAGGAGTGTTGGTGTTGAAGCACACA
GGAGACGGGGAAAATGTGTATTGGTCGTCGCCCGCAATGAAAAAGAAGCA
GAAGGGAAAGGAGGGGGGCAGGAAAGTCAGGGTGCAGGTGATGGAACGGG
GGGCGTTTGGAGTGTTTGAAGGGGAGAAGGCGCTGTGGACGAGCGATGGG
TTGGGGTTGAATGCCTAAGGACGTGCTCGAGGCAATTTCTCTCCCTCCTT
CCCTCAGTACTTTCTCCTTTGCTCGATTCTACATGCTTAGTATTAATAGC
ATGGACTGGGTGGTTTCTACAGGAGGGATGGTGGGAAGAAGGGCTGCAAA
TTTGTGTGTAATGTGAAATGATAAGAGAGAAGAAATGATGACGGTAACCG
AGAGAGAGACCGAGGCTGACATAGCGCAAGGGAATGATGTCTTTCTTGTT
TAATGTACTGCATGTATTTTGGTTCGAAGGTGCATGCAACAGGGTGAAAA
GAAGGAGAAGGTAGGGATGACAATGCTACCAAAGTACTTATTCGGCGATC
TCAAAGTATCATCCCTTAAGCTCACT back to topCoding sequence (CDS) from alignment at chr28:301443..303518- >NO28G00920.1 ID=NO28G00920.1|Name=NO28G00920.1|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at chr28:301443..303518- (Nannochloropsis oceanica)
ATGAAGGCAACCACTGCGAGTGACCTTATGGCGACCGGCCTGGATGCCAT
GCGCAAGTTTTTGCTTATGCAGTACCCTTATGAGTTTGAGATCTGTCTTT
TCGCCTTCTGCCTCGGTGCCTCCATGCGAGTCCGGCCCTCAGCCCAACAC
TCATGGCTCCACCACCTTGTCCTAGTCTTCCTCACCGGCTTCGCAGGCGG
GACCATCATCCCTATGTTCTTCGGACGCACCCCCGTTATCTTCGTAAACG
ATGTCCTCGTCCCCCTCGTCTGCCTCTCGTGGTACCTTGTCCACTTTACA
TGTGCCGGCCCGTTGCTCCAATCCTCCCCTTTGAAATTCGTCCTCGTCTG
CCTCTTCGAAATTTACCGTGCCGCCAGCATTATCAAAACTGTCGGTCAGG
TTGCCGCGGACATCCCTCCCGGGCCTTATTATCCCATTCCATTGGTTGGT
CCCGTCCTCGTTGGCACTCTCTCCGGAAGCATGGGCGCCTTCATGCCCCC
CGACCGCGGCATCTCCTTCCTCGCCTCCGGCGTGCCTCTCAACCTTCAAA
CCACCATACTGGCCTGCACATTTTTTCATTTCGCCGCACATGATCCCCAC
TTAGTAGGCGCCTACCTCCGAGGGTTACCCGGACTGAGGCTCAACGAACC
CGAGAACCTCAAGGCACTCACTGTTTTCTTCTTCGTCGCCATGGCCTTTA
TCTCTTTGATCAAAGGACCGGATTACAACCCCTTTGCCCCTTTCCACCGC
ACCCTCTACCAACTTCTCGGTATTCCACTTTCCCCCGCAACCGAAGAACG
CCTCAAGGCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GTCGTCGTCCCCCCTCCACGAAGGACAAAAGCCACCTATTACAAGGAAGC
AAGATCCTCGTCCCCATCCTTGCCATCCTCGCCTATCAATTTGCCGGCAC
TGGCAAGATCTTTCCCCGCACTAGCCTGCCCGTCGGTGGGCGCCTGAATC
CGGGTGACTACTTGTCAGCCTGCGGTCTAGCCAAGACCTACGCCGGTCAA
TGTACTCAGCAGCACTTCCTCACTCTTGACGCCGATGGTCGGCTATCCCT
CTACAAGGGTACCTCTCCGAAGGACACGGGCAGTCAGAGGGTGTGGCAGA
GCAAGAACACGAAGAAGGCCGGGAAGTTGTCGGATGCCGGCATATTCGCC
GAGCTCCGACCGGAAGGAGTGTTGGTGTTGAAGCACACAGGAGACGGGGA
AAATGTGTATTGGTCGTCGCCCGCAATGAAAAAGAAGCAGAAGGGAAAGG
AGGGGGGCAGGAAAGTCAGGGTGCAGGTGATGGAACGGGGGGCGTTTGGA
GTGTTTGAAGGGGAGAAGGCGCTGTGGACGAGCGATGGGTTGGGGTTGAA
TGCCTAA back to top
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