NO28G00900, NO28G00900 (gene) Nannochloropsis oceanica

Overview
NameNO28G00900
Unique NameNO28G00900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1360
Alignment locationchr28:299020..300379 -

Link to JBrowse

Properties
Property NameValue
DescriptionCYTOCHROME C-1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:299020..300379 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron transfer activity
GO:0020037heme binding
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR036909Cyt_c-like_dom_sf
IPR009056Cyt_c-like_dom
IPR002327Cyt_c_1A/1B
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Homology
[Close]
BLAST of NO28G00900 vs. NCBI_GenBank
Match: GBG27550.1 (Cytochrome c [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 177.6 bits (449), Expect = 3.200e-41
Identity = 82/98 (83.67%), Postives = 89/98 (90.82%), Query Frame = 0 
Query:   64 GAKIFKTKCSQCHTVEKGGAHKQGPNLNGIFGRQSGQAENYSYSTANKNSGIMWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRKDLIAYLKESTA 162
            GAKIFKTKCSQCHTVE GGAHKQGPNLNG FGRQSGQA+ + YS ANKNSGI+WG+DTLF+YLLAPK YI GTKMVFAG+K  KDRKDLIAYLKE+TA
Sbjct:  121 GAKIFKTKCSQCHTVEAGGAHKQGPNLNGFFGRQSGQADGFEYSDANKNSGIIWGDDTLFDYLLAPKKYIPGTKMVFAGLKKEKDRKDLIAYLKEATA 218
[Close]
BLAST of NO28G00900 vs. NCBI_GenBank
Match: XP_002185820.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65290.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 173.7 bits (439), Expect = 4.600e-40
Identity = 81/101 (80.20%), Postives = 88/101 (87.13%), Query Frame = 0 
Query:   59 MSAEKGAKIFKTKCSQCHTVEKGGAHKQGPNLNGIFGRQSGQAENYSYSTANKNSGIMWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRKDLIAYLKES 160
            MS +KGAKIFKTKCSQCHTVE+GG+HKQGPNL G FGRQSGQA+ YSYS ANK SGI WGEDTLFEYL  PK YIKGTKM+FAG+K  KDRKDLIAYLK +
Sbjct:    1 MSEKKGAKIFKTKCSQCHTVEEGGSHKQGPNLYGFFGRQSGQADGYSYSAANKKSGITWGEDTLFEYLENPKKYIKGTKMIFAGLKKEKDRKDLIAYLKST 101
[Close]
BLAST of NO28G00900 vs. NCBI_GenBank
Match: GAX18695.1 (cytochrome c [Fistulifera solaris])

HSP 1 Score: 172.6 bits (436), Expect = 1.000e-39
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = 0 
Query:   57 LVMSAEKGAKIFKTKCSQCHTVEKGGAHKQGPNLNGIFGRQSGQAENYSYSTANKNSGIMWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRKDLIAYLK 158
            + MS +KGAKIFKTKCSQCHTVE+GG+HKQGPNL G FGRQSGQA+ YSYS ANK SGI+WGEDTLFEYL  PK YIKGTKM+FAG+K  KDR+DLIAYLK
Sbjct:   32 ITMSDKKGAKIFKTKCSQCHTVEEGGSHKQGPNLYGFFGRQSGQADGYSYSAANKKSGIIWGEDTLFEYLENPKKYIKGTKMIFAGLKKEKDRQDLIAYLK 132
[Close]
BLAST of NO28G00900 vs. NCBI_GenBank
Match: GAX17236.1 (cytochrome c [Fistulifera solaris])

HSP 1 Score: 171.0 bits (432), Expect = 3.000e-39
Identity = 80/99 (80.81%), Postives = 87/99 (87.88%), Query Frame = 0 
Query:   59 MSAEKGAKIFKTKCSQCHTVEKGGAHKQGPNLNGIFGRQSGQAENYSYSTANKNSGIMWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRKDLIAYLK 158
            MS +KGAKIFKTKCSQCHTVE+GG+HKQGPNL G FGRQSGQA+ YSYS ANK SGI+WGEDTLFEYL  PK YIKGTKM+FAG+K  KDR DLIAYLK
Sbjct:    1 MSDKKGAKIFKTKCSQCHTVEEGGSHKQGPNLYGFFGRQSGQADGYSYSAANKKSGIIWGEDTLFEYLENPKKYIKGTKMIFAGLKKEKDRHDLIAYLK 99
[Close]
BLAST of NO28G00900 vs. NCBI_GenBank
Match: XP_009034501.1 (hypothetical protein AURANDRAFT_59926 [Aureococcus anophagefferens] >EGB10931.1 hypothetical protein AURANDRAFT_59926 [Aureococcus anophagefferens])

HSP 1 Score: 169.1 bits (427), Expect = 1.100e-38
Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = 0 
Query:   59 MSAEKGAKIFKTKCSQCHTVEKGGAHKQGPNLNGIFGRQSGQAENYSYSTANKNSGIMWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRKDLIAYLKESTA 162
            MSA KGAKIFKTKCSQCHTVE GGAHKQGPNLNG+FGRQSGQA  YSYS ANK+SG++W ++TLF+YLLAPK YIKGTKMVFAGIK  K+R +LIAY++E+ A
Sbjct:    1 MSA-KGAKIFKTKCSQCHTVEAGGAHKQGPNLNGLFGRQSGQAGGYSYSQANKDSGVIWSKETLFDYLLAPKKYIKGTKMVFAGIKKPKERNELIAYMEEACA 102
[Close]
BLAST of NO28G00900 vs. NCBI_GenBank
Match: GAX99882.1 (cytochrome c [Pythium insidiosum])

HSP 1 Score: 167.5 bits (423), Expect = 3.300e-38
Identity = 77/99 (77.78%), Postives = 88/99 (88.89%), Query Frame = 0 
Query:   61 AEKGAKIFKTKCSQCHTVEKGGAHKQGPNLNGIFGRQSGQAENYSYSTANKNSGIMWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRKDLIAYLKES 160
            A KGAKIFKTKC+QCHTV  GGAHKQGPNLNG+  RQSGQAENYSYS ANKNSG++W ++TLFEYLLAPK YIKGTKMVFAG+K  ++R+DLIAYL +S
Sbjct:   10 AAKGAKIFKTKCAQCHTVAAGGAHKQGPNLNGMINRQSGQAENYSYSAANKNSGVIWTDETLFEYLLAPKKYIKGTKMVFAGLKKPQERRDLIAYLIQS 108
[Close]
BLAST of NO28G00900 vs. NCBI_GenBank
Match: XP_002292008.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED90859.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 167.2 bits (422), Expect = 4.300e-38
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 0 
Query:   62 EKGAKIFKTKCSQCHTVEKGGAHKQGPNLNGIFGRQSGQAENYSYSTANKNSGIMWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRKDLIAYLKES 160
            +KGAK+FKTKCSQCHTVE GGAHKQGPNL G FGRQSG A+ YSYS+ANK SGIMWGEDTLFEYL  PK YIKGTKMVFAGIK  ++RKDLIAYL+ +
Sbjct:    8 KKGAKVFKTKCSQCHTVEAGGAHKQGPNLYGFFGRQSGLADGYSYSSANKKSGIMWGEDTLFEYLENPKKYIKGTKMVFAGIKKPQERKDLIAYLQST 105
[Close]
BLAST of NO28G00900 vs. NCBI_GenBank
Match: XP_024575365.1 (cytochrome c [Plasmopara halstedii] >CEG38996.1 cytochrome c [Plasmopara halstedii])

HSP 1 Score: 166.4 bits (420), Expect = 7.400e-38
Identity = 76/100 (76.00%), Postives = 88/100 (88.00%), Query Frame = 0 
Query:   61 AEKGAKIFKTKCSQCHTVEKGGAHKQGPNLNGIFGRQSGQAENYSYSTANKNSGIMWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRKDLIAYLKEST 161
            A KGAKIFKTKC+QCHTV  GGAHKQGPNL+G+  RQSGQAE YSYS ANKNSG++W ++TLFEYLLAPK YIKGTKMVFAG+K  ++R+DLIAYL E+T
Sbjct:   11 AAKGAKIFKTKCAQCHTVNAGGAHKQGPNLSGMINRQSGQAEGYSYSAANKNSGVVWTDETLFEYLLAPKKYIKGTKMVFAGLKKPQERRDLIAYLMEAT 110
[Close]
BLAST of NO28G00900 vs. NCBI_GenBank
Match: XP_002900095.1 (cytochrome c [Phytophthora infestans T30-4] >EEY60299.1 cytochrome c [Phytophthora infestans T30-4])

HSP 1 Score: 166.0 bits (419), Expect = 9.600e-38
Identity = 76/100 (76.00%), Postives = 87/100 (87.00%), Query Frame = 0 
Query:   61 AEKGAKIFKTKCSQCHTVEKGGAHKQGPNLNGIFGRQSGQAENYSYSTANKNSGIMWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRKDLIAYLKEST 161
            A KGAKIFKTKC+QCHT   GGAHKQGPNL G+  RQSGQAENYSYS ANKNSG++W ++TLFEYLLAPK YIKGTKMVFAG+K  ++R+DLIAYL E+T
Sbjct:   11 AAKGAKIFKTKCAQCHTTNAGGAHKQGPNLAGMINRQSGQAENYSYSAANKNSGVVWTDETLFEYLLAPKKYIKGTKMVFAGLKKPQERRDLIAYLMEAT 110
[Close]
BLAST of NO28G00900 vs. NCBI_GenBank
Match: CBJ31344.1 (Cytochrome c [Ectocarpus siliculosus])

HSP 1 Score: 165.6 bits (418), Expect = 1.300e-37
Identity = 76/103 (73.79%), Postives = 87/103 (84.47%), Query Frame = 0 
Query:   59 MSAEKGAKIFKTKCSQCHTVEKGGAHKQGPNLNGIFGRQSGQAENYSYSTANKNSGIMWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRKDLIAYLKESTA 162
            MS + GAKIFKTKCSQCHTVEK   HKQGPNLNG+FGR +G  + YSYSTANK SG++W E +LF+YLLAPK YIKGTKMVFAGIK   +RK+LIAYLKE+TA
Sbjct:    1 MSTKAGAKIFKTKCSQCHTVEKDAGHKQGPNLNGLFGRTAGTVDGYSYSTANKTSGVLWDESSLFDYLLAPKKYIKGTKMVFAGIKKPAERKELIAYLKEATA 103
The following BLAST results are available for this feature:
BLAST of NO28G00900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GBG27550.13.200e-4183.67Cytochrome c [Aurantiochytrium sp. FCC1311][more]
XP_002185820.14.600e-4080.20predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX18695.11.000e-3979.21cytochrome c [Fistulifera solaris][more]
GAX17236.13.000e-3980.81cytochrome c [Fistulifera solaris][more]
XP_009034501.11.100e-3877.67hypothetical protein AURANDRAFT_59926 [Aureococcus... [more]
GAX99882.13.300e-3877.78cytochrome c [Pythium insidiosum][more]
XP_002292008.14.300e-3879.59predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_024575365.17.400e-3876.00cytochrome c [Plasmopara halstedii] >CEG38996.1 cy... [more]
XP_002900095.19.600e-3876.00cytochrome c [Phytophthora infestans T30-4] >EEY60... [more]
CBJ31344.11.300e-3773.79Cytochrome c [Ectocarpus siliculosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004893NSK004893Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00900.1NO28G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606831gene_9194Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00900.1NO28G00900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00900 ID=NO28G00900|Name=NO28G00900|organism=Nannochloropsis oceanica|type=gene|length=1360bp
ATGTCCTCTCGTCTTTCCTTTTCCTTCCTGTATCCCAAGATTTTCTTCCG
CAACTCAAAATCAGAAGCAAGGCATTCATCGGAGCCATGTGAAGAAGACT
TTGAAGCCTCTCTTCGCATCCTCGGCCCTGGCTGGGCCTTGGGgtaagtt
atatcccgcgcctgccgcagcaggctttaatatcggcccgtgccaccaat
acaagcgccatgtccacaacgtttttaaatggattttcaaagccttcaag
gcctcgtcttgggaaatgtatggctggcctggaacacaggtcgtgttgga
agatcatttgacggaagagtgcttctcgcgcatcgtgagggctacggttc
tctattactcactccctacccaccgaccactacgccacctcacacgcaca
gGAGACCGCTCCAACAACCCCAACTCCTTGTCATGTCTGCCGAGAAGGGT
GCAAAGATTTTCAAGACCAAGTGCTCCCAGTGCCACACAGTCGAAAAGgt
tcgttctcgtttgcatgcgtggcaagctcgggtggtggtgggtgggtgtt
caggtattgtgagtaagcacaggacaggaagataaaacacgcttgatgca
ggtatgcaatttgctgtacgtaaaaatggccttaatccatgaaagtacgt
tgcgggagatgccaagcatttgtgcagcgaggatcaagtgcggggcagag
cacgaccttgcgtctgcggacagcatgctttagggcctgagttgaggcct
ccacctttcgctcaagagagtgcttttggtgtgcttgtgcaggaggaaac
atacccctgactctcggtcgcagttctaagatgcatttgttccacgtccc
atttcatattatgtcggagttatggcctatctcatccttttccctgtccc
acccgagtcacggttctcacacatcctctcttcgttcctccacaatgtac
aaaaacagGGCGGTGCGCACAAGCAGGGACCTAACCTGAACGGCATTTTT
GGCCGGCAGTCGGGTCAGGCGGAGAATTACTCGTACTCAACTGCCAACAA
GAACTCAGGCATCATGTGGGGGGAGGACACTCTCTTCGAGTACCTGCTGG
CGCCCAAGAACTACATCAAGGGCACCAAGATGGTCTTCGCCGGCATCAAG
TCCGCCAAGGACCGCAAGGACCTGATCGCTTACCTCAAGGAGTCCACgta
agcctctccctccctccctcccttcatcccttctcccctcccctttatcc
ctccctcctgcgctcttctcagctgatcggctggtgccgagcaccacatg
tgtccatatgtctcattttccctctttcgactttcgacgtcttctcacca
cagCGCCTAG
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protein sequence of NO28G00900.1

>NO28G00900.1-protein ID=NO28G00900.1-protein|Name=NO28G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MSSRLSFSFLYPKIFFRNSKSEARHSSEPCEEDFEASLRILGPGWALGRP
LQQPQLLVMSAEKGAKIFKTKCSQCHTVEKGGAHKQGPNLNGIFGRQSGQ
AENYSYSTANKNSGIMWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRK
DLIAYLKESTA*
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Synonyms
Publications