NO28G00900.1, NO28G00900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G00900.1
Unique NameNO28G00900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length486
Alignment locationchr28:299020..300379 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:299020..300379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G00900.1 vs.
Match: GBG27550.1 (Cytochrome c [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 177.6 bits (449), Expect = 3.200e-41
Identity = 82/98 (83.67%), Postives = 89/98 (90.82%), Query Frame = 0 
Query:   64 GAKIFKTKCSQCHTVEKGGAHKQGPNLNGIFGRQSGQAENYSYSTANKNSGIMWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRKDLIAYLKESTA 162
            GAKIFKTKCSQCHTVE GGAHKQGPNLNG FGRQSGQA+ + YS ANKNSGI+WG+DTLF+YLLAPK YI GTKMVFAG+K  KDRKDLIAYLKE+TA
Sbjct:  121 GAKIFKTKCSQCHTVEAGGAHKQGPNLNGFFGRQSGQADGFEYSDANKNSGIIWGDDTLFDYLLAPKKYIPGTKMVFAGLKKEKDRKDLIAYLKEATA 218
The following BLAST results are available for this feature:
BLAST of NO28G00900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GBG27550.13.200e-4183.67Cytochrome c [Aurantiochytrium sp. FCC1311][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G00900NO28G00900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G00900.1NO28G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G00900.1.cds1NO28G00900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00900.1.cds2NO28G00900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00900.1.cds3NO28G00900.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G00900.1.cds4NO28G00900.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G00900.1 ID=NO28G00900.1|Name=NO28G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=486bp
ATGTCCTCTCGTCTTTCCTTTTCCTTCCTGTATCCCAAGATTTTCTTCCG
CAACTCAAAATCAGAAGCAAGGCATTCATCGGAGCCATGTGAAGAAGACT
TTGAAGCCTCTCTTCGCATCCTCGGCCCTGGCTGGGCCTTGGGGAGACCG
CTCCAACAACCCCAACTCCTTGTCATGTCTGCCGAGAAGGGTGCAAAGAT
TTTCAAGACCAAGTGCTCCCAGTGCCACACAGTCGAAAAGGGCGGTGCGC
ACAAGCAGGGACCTAACCTGAACGGCATTTTTGGCCGGCAGTCGGGTCAG
GCGGAGAATTACTCGTACTCAACTGCCAACAAGAACTCAGGCATCATGTG
GGGGGAGGACACTCTCTTCGAGTACCTGCTGGCGCCCAAGAACTACATCA
AGGGCACCAAGATGGTCTTCGCCGGCATCAAGTCCGCCAAGGACCGCAAG
GACCTGATCGCTTACCTCAAGGAGTCCACCGCCTAG
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protein sequence of NO28G00900.1

>NO28G00900.1-protein ID=NO28G00900.1-protein|Name=NO28G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MSSRLSFSFLYPKIFFRNSKSEARHSSEPCEEDFEASLRILGPGWALGRP
LQQPQLLVMSAEKGAKIFKTKCSQCHTVEKGGAHKQGPNLNGIFGRQSGQ
AENYSYSTANKNSGIMWGEDTLFEYLLAPKNYIKGTKMVFAGIKSAKDRK
DLIAYLKESTA*
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mRNA from alignment at chr28:299020..300379-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G00900.1 ID=NO28G00900.1|Name=NO28G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1360bp|location=Sequence derived from alignment at chr28:299020..300379- (Nannochloropsis oceanica)
ATGTCCTCTCGTCTTTCCTTTTCCTTCCTGTATCCCAAGATTTTCTTCCG
CAACTCAAAATCAGAAGCAAGGCATTCATCGGAGCCATGTGAAGAAGACT
TTGAAGCCTCTCTTCGCATCCTCGGCCCTGGCTGGGCCTTGGGGTAAGTT
ATATCCCGCGCCTGCCGCAGCAGGCTTTAATATCGGCCCGTGCCACCAAT
ACAAGCGCCATGTCCACAACGTTTTTAAATGGATTTTCAAAGCCTTCAAG
GCCTCGTCTTGGGAAATGTATGGCTGGCCTGGAACACAGGTCGTGTTGGA
AGATCATTTGACGGAAGAGTGCTTCTCGCGCATCGTGAGGGCTACGGTTC
TCTATTACTCACTCCCTACCCACCGACCACTACGCCACCTCACACGCACA
GGAGACCGCTCCAACAACCCCAACTCCTTGTCATGTCTGCCGAGAAGGGT
GCAAAGATTTTCAAGACCAAGTGCTCCCAGTGCCACACAGTCGAAAAGGT
TCGTTCTCGTTTGCATGCGTGGCAAGCTCGGGTGGTGGTGGGTGGGTGTT
CAGGTATTGTGAGTAAGCACAGGACAGGAAGATAAAACACGCTTGATGCA
GGTATGCAATTTGCTGTACGTAAAAATGGCCTTAATCCATGAAAGTACGT
TGCGGGAGATGCCAAGCATTTGTGCAGCGAGGATCAAGTGCGGGGCAGAG
CACGACCTTGCGTCTGCGGACAGCATGCTTTAGGGCCTGAGTTGAGGCCT
CCACCTTTCGCTCAAGAGAGTGCTTTTGGTGTGCTTGTGCAGGAGGAAAC
ATACCCCTGACTCTCGGTCGCAGTTCTAAGATGCATTTGTTCCACGTCCC
ATTTCATATTATGTCGGAGTTATGGCCTATCTCATCCTTTTCCCTGTCCC
ACCCGAGTCACGGTTCTCACACATCCTCTCTTCGTTCCTCCACAATGTAC
AAAAACAGGGCGGTGCGCACAAGCAGGGACCTAACCTGAACGGCATTTTT
GGCCGGCAGTCGGGTCAGGCGGAGAATTACTCGTACTCAACTGCCAACAA
GAACTCAGGCATCATGTGGGGGGAGGACACTCTCTTCGAGTACCTGCTGG
CGCCCAAGAACTACATCAAGGGCACCAAGATGGTCTTCGCCGGCATCAAG
TCCGCCAAGGACCGCAAGGACCTGATCGCTTACCTCAAGGAGTCCACGTA
AGCCTCTCCCTCCCTCCCTCCCTTCATCCCTTCTCCCCTCCCCTTTATCC
CTCCCTCCTGCGCTCTTCTCAGCTGATCGGCTGGTGCCGAGCACCACATG
TGTCCATATGTCTCATTTTCCCTCTTTCGACTTTCGACGTCTTCTCACCA
CAGCGCCTAG
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Coding sequence (CDS) from alignment at chr28:299020..300379-

>NO28G00900.1 ID=NO28G00900.1|Name=NO28G00900.1|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at chr28:299020..300379- (Nannochloropsis oceanica)
ATGTCCTCTCGTCTTTCCTTTTCCTTCCTGTATCCCAAGATTTTCTTCCG
CAACTCAAAATCAGAAGCAAGGCATTCATCGGAGCCATGTGAAGAAGACT
TTGAAGCCTCTCTTCGCATCCTCGGCCCTGGCTGGGCCTTGGGGAGACCG
CTCCAACAACCCCAACTCCTTGTCATGTCTGCCGAGAAGGGTGCAAAGAT
TTTCAAGACCAAGTGCTCCCAGTGCCACACAGTCGAAAAGGGCGGTGCGC
ACAAGCAGGGACCTAACCTGAACGGCATTTTTGGCCGGCAGTCGGGTCAG
GCGGAGAATTACTCGTACTCAACTGCCAACAAGAACTCAGGCATCATGTG
GGGGGAGGACACTCTCTTCGAGTACCTGCTGGCGCCCAAGAACTACATCA
AGGGCACCAAGATGGTCTTCGCCGGCATCAAGTCCGCCAAGGACCGCAAG
GACCTGATCGCTTACCTCAAGGAGTCCACCGCCTAG
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Synonyms
Publications