NO28G00620, NO28G00620 (gene) Nannochloropsis oceanica

Overview
NameNO28G00620
Unique NameNO28G00620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2680
Alignment locationchr28:218916..221595 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:218916..221595 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO28G00620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL059nonsL059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR054ncniR054Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR094ngnoR094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO28G00620.1NO28G00620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606730gene_9164Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO28G00620.1NO28G00620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO28G00620 ID=NO28G00620|Name=NO28G00620|organism=Nannochloropsis oceanica|type=gene|length=2680bp
CAACAGGGAACACTCATTGAGGTATATGCAGCTGTAGTGCCTGGGTAAGG
CAGTTATGCAGCCGTAACGGACCACAAACGATGCTTTTCCTTCCTCCCGC
TAAGTACGACACCTGCCTAGCACGTCTTCCTCGGCCTCCTTCATCGCTCC
TCGATTTCCTACCCTTCCTACCCTTTCTATCAGCCTGCATACCTGCCAAT
AATAAGCTCTTGAAAGCAGGGGCACAAgtaagataggataacgggatgag
gtgcaagaagatagccaacaaatcatgccttcgccttccctcaaccacca
ccatcaccaccatcaccaccatcacgagcagCAGCTGTTTCAGCCCCTAT
TCCGAGTCAAATCAACAAATGCAGCCATGCTGACCAGTAGCTGGTGTCAG
AATCCAGCACAACAGCCGCCGCTGCTCCCTCTATTGGCGCCCTTGTCCTC
GTCGTCCCCGTCGGACCCGTTGCACCTCGATGTGACTGTCGGCCCGTCAC
CATTGAGGGAACAGCCGCAGGAACAGCAGGACCAAGGTAGAGCAGTGTTT
TCTGCGACAAAGCAGGAGTGGGTGCTCCGAAAACACGAGCAACACTTGCA
CAGGCAGCAGCAGGAAAGGCAGCAGAAGAGAGTGGAGGCAAATTACCAAG
TGCCGCAGGAAAGAGAAGAGGTCGAGAAAAGGCAACGAGACATCCACGCT
GATGTCGAGCAGCAGCGACAAAAATTTAGGGAGGACCAGCTGCAGCTGCT
AGATCAGCGTCAAGGAAAGCAGCTTGTGCAGCAGCAGCACCACCACCACC
ACCAACAACAACGGCAGCAGCAGCAAAAGCTGCAGATGTTGTGGTCTCCA
CAAAATTCGCAGAAGCATATTTTGACACCCTTCCAGCGACTGGTGCTCCG
GCAGCAGCAGCAGCTACATCAAGAGCCACTCATTTTTCTTCCCTCCAACT
GCCCTTCCAAGTTCCAGCAGCAGCGACAGCAGGAGGAGGAGCAGTCATCT
CCCTTTGTAGCTTTATCAGCAGCATGTGAAGGGCATTTCTTGGTTGAGAG
ATCAAAGAGGGAGGAGGAAAGGGGAGAGGGAGAGCAGGGAAAGGACGGCT
CCACGAGCGGCATACAAGAGGGATGGATGACCTTCCCTCCCATTCTTCCC
GCCATTGCTGCTGCTACGCCTGATCACGATACTGCTCTTGCTTCTTCTGC
TGTATTTGGTGAAGCGAGAGGAGTGAAGCGAACACGCATGGAGGGAAGAG
GACAGCGGGGAATGATCGGAGAGAAAGGAAGCGGAGGAAGAGGAGGACGG
TCACCAGAAAGGGGCACTGTCCCAAGAGAAAACCAGTTTCAACTTCACAG
TCCAAGTGGTAGTGGCAGCAGTTTGAGCCGCAGCAGCTTTACTTGCATGA
AGGGCCGTGGCACCTGCCATAAATACCCGGGTGAAAAGCATGCCAGGCGG
GCTCCAAGGGGGCCTCTAGCGTCGCCGGCCTACCCGACGCCCCTCCTCGC
GAGACGTATGGTGCTTGGTGAGAACAATCGACTCACACTCCAGGACGAAC
AATATCGACAGCAGCAGCAGCAACAGCAGCAGCAGACACATCCTGGATCC
TTCCTTTTAAAGAGCAGCAGCACCAGCACCGTCAGCAGCTTTGGCAGCAC
CATGAGAGGAGGAGGAGATGAACTTCTAAATCTTTTAATGGGCTTCGACC
GCATCAACGACTCGTCTTCTCATTGTTGTACTTGTCGTGCTTCTCCTTCC
TGTTCTTCTTCCCCTTCATCTTATGCGTCATCAAGTGGCATGCTTTTTTA
CCGACGGGAGAACAACCGCTTAACGACCATTATTCGATCCCTTGAAGGAA
AGCTGTTCACCCTGACTTCTCAACTAGAGAACCAGCGGCTGCAGCAGGAG
GAACAGCGAAAGCAGCAGGAGATTGAGTCACTTGCAGACGGGTGGTGGTG
TCACGAACTGCTTTTCTCCTCCCTTCCATACTCCCTTCCTTCCTCCCCAT
CCTCTCTTCTGCCGCGTGATGACGTCGCGCTGGAAGAGAGCTTGGACCGA
TTTTTGGTTGAGATGTTGAACGGCTTCAACGGCGAAGGCATGCTTTGAGA
AGAACGTTTATTCCCCATCTCATTTTCGTCCTCTCTCACTCTCTCCATTT
CTCCTCCCTCCCTCTTCCTTCCCTCACTGCACGAGGTGAAATCGACTTAG
AAAATAGGAGCATGATAAGGAGCATGATGAACACTCAATCAAGACGACTA
CCACCTTGGTAGAGTGAGAGAGTGTGTATCTGTTTATCTATCTATCTACA
TTGAAACATGCCAGTAACTTTCCAGCAACCAAGCGACCAGATGCACGCCT
CGATTCCTCATGAAACCAGGCCAAGCCAAGCCGAGCAACACTAGATAAGG
AAACCAACGACCGGAGAAGGCAAGAAGGAGAGTGGACCTGGTAGAACGCG
AATTACATCGTAACTTTATACGTGCACAGACAAATATACTCAAACATGAC
CCCTCATCTCGATGATATGTTGAACAAAGCACAAAGCAAGACAATAAAAG
CTGAACAAGAGAGGAGAGAGAGAAGAGGAAGCAATGGCCTCTCAATAATA
GGTTCACTTTAAAATGTGTGGAAAGTAAAATATCCCGCTTCACACCTACG
ACTCCAGCTTTTCAAAAACGACAAAGATTC
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protein sequence of NO28G00620.1

>NO28G00620.1-protein ID=NO28G00620.1-protein|Name=NO28G00620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MLFLPPAKYDTCLARLPRPPSSLLDFLPFLPFLSACIPANNKLLKAGAQQ
LFQPLFRVKSTNAAMLTSSWCQNPAQQPPLLPLLAPLSSSSPSDPLHLDV
TVGPSPLREQPQEQQDQGRAVFSATKQEWVLRKHEQHLHRQQQERQQKRV
EANYQVPQEREEVEKRQRDIHADVEQQRQKFREDQLQLLDQRQGKQLVQQ
QHHHHHQQQRQQQQKLQMLWSPQNSQKHILTPFQRLVLRQQQQLHQEPLI
FLPSNCPSKFQQQRQQEEEQSSPFVALSAACEGHFLVERSKREEERGEGE
QGKDGSTSGIQEGWMTFPPILPAIAAATPDHDTALASSAVFGEARGVKRT
RMEGRGQRGMIGEKGSGGRGGRSPERGTVPRENQFQLHSPSGSGSSLSRS
SFTCMKGRGTCHKYPGEKHARRAPRGPLASPAYPTPLLARRMVLGENNRL
TLQDEQYRQQQQQQQQQTHPGSFLLKSSSTSTVSSFGSTMRGGGDELLNL
LMGFDRINDSSSHCCTCRASPSCSSSPSSYASSSGMLFYRRENNRLTTII
RSLEGKLFTLTSQLENQRLQQEEQRKQQEIESLADGWWCHELLFSSLPYS
LPSSPSSLLPRDDVALEESLDRFLVEMLNGFNGEGML*
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Synonyms
Publications